CsaV3_4G031450 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G031450
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	arabinogalactan protein 23
Location	chr4 : 21889466 .. 21889642 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AACTTTGCCTGCGCCGCTTTCATCACTGTTGCCGCCTCCCTGAGCATGGTTTTGGCCTCTGATGAAGCAGCGTCCCCAGCACCCGGCCCATCTAGCGCTGCTTCCGCTACTTTGCCAGTCGTCGGGACGTTGCTAGGTGCATCTGCTGCCTCTCTCATTGCTTACTGCCTTCAGTAA

mRNA sequence

AACTTTGCCTGCGCCGCTTTCATCACTGTTGCCGCCTCCCTGAGCATGGTTTTGGCCTCTGATGAAGCAGCGTCCCCAGCACCCGGCCCATCTAGCGCTGCTTCCGCTACTTTGCCAGTCGTCGGGACGTTGCTAGGTGCATCTGCTGCCTCTCTCATTGCTTACTGCCTTCAGTAA

Coding sequence (CDS)

AACTTTGCCTGCGCCGCTTTCATCACTGTTGCCGCCTCCCTGAGCATGGTTTTGGCCTCTGATGAAGCAGCGTCCCCAGCACCCGGCCCATCTAGCGCTGCTTCCGCTACTTTGCCAGTCGTCGGGACGTTGCTAGGTGCATCTGCTGCCTCTCTCATTGCTTACTGCCTTCAGTAA

Protein sequence

NFACAAFITVAASLSMVLASDEAASPAPGPSSAASATLPVVGTLLGASAASLIAYCLQ

Homology

[Close]

BLAST of CsaV3_4G031450 vs. NCBI nr
Match: PNT29922.1 (hypothetical protein POPTR_006G056200v3 [Populus trichocarpa])

HSP 1 Score: 57.0 bits (136), Expect = 2.5e-05
Identity = 33/53 (62.26%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 6  AFITVAASLSMVLASDEAASPAPGPSSAASATLPVVGTLLGASAASLIAYCLQ 59
          A + VAAS+S  LA+DE ++PAP P+S ASATLPVVG+L+GAS  S  AY LQ
Sbjct: 9  AVLVVAASMSAALAADEISAPAPSPTSGASATLPVVGSLIGASLVSFFAYYLQ 61

[Close]

BLAST of CsaV3_4G031450 vs. NCBI nr
Match: PON58107.1 (hypothetical protein PanWU01x14_168770 [Parasponia andersonii])

HSP 1 Score: 56.2 bits (134), Expect = 4.3e-05
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 6  AFITVAASLSMVLASDEAASPAPGPSSAASATLPVVGTLLGASAASLIAYCL 58
          A I  AASLS V+A++E  +PAPGPSS ASATLPVVG+L+GAS  S  AY L
Sbjct: 48 AVIVAAASLSSVMAANEVLAPAPGPSSGASATLPVVGSLVGASLVSFFAYYL 99

[Close]

BLAST of CsaV3_4G031450 vs. NCBI nr
Match: PON91671.1 (hypothetical protein TorRG33x02_125020 [Trema orientalis])

HSP 1 Score: 56.2 bits (134), Expect = 4.3e-05
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 6  AFITVAASLSMVLASDEAASPAPGPSSAASATLPVVGTLLGASAASLIAYCL 58
          A I  AASLS V+A++E  +PAPGPSS ASATLPVVG+L+GAS  S  AY L
Sbjct: 48 AVIVAAASLSSVMAANEVLAPAPGPSSGASATLPVVGSLVGASLVSFFAYYL 99

[Close]

BLAST of CsaV3_4G031450 vs. NCBI nr
Match: PNS97963.1 (hypothetical protein POPTR_016G052000v3 [Populus trichocarpa])

HSP 1 Score: 55.8 bits (133), Expect = 5.6e-05
Identity = 32/53 (60.38%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 6  AFITVAASLSMVLASDEAASPAPGPSSAASATLPVVGTLLGASAASLIAYCLQ 59
          A + VAAS+S  LA+DE ++PAP P+S ASATLPVVG+L+GAS  S  AY  Q
Sbjct: 9  AVLVVAASMSAALAADEVSAPAPSPTSGASATLPVVGSLIGASLVSFFAYYFQ 61

[Close]

BLAST of CsaV3_4G031450 vs. NCBI nr
Match: OVA12266.1 (hypothetical protein BVC80_1779g40 [Macleaya cordata])

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-04
Identity = 30/56 (53.57%), Postives = 42/56 (75.00%), Query Frame = 0


Query: 3  ACAAFITVAASLSMVLASDEAASPAPGPSSAASATLPVVGTLLGASAASLIAYCLQ 59
          +CA  I VAAS++  LA+DEA +PAPGP+S A  T+PV+G+L+GAS  S  A+ +Q
Sbjct: 7  SCAVLIAVAASMNAALAADEAHAPAPGPASNAMTTMPVIGSLVGASLVSFFAFYMQ 62

[Close]

BLAST of CsaV3_4G031450 vs. TAIR10
Match: AT3G57690.1 (arabinogalactan protein 23)

HSP 1 Score: 47.8 bits (112), Expect = 2.8e-06
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 3  ACAAFITVAASLSMVLASDEAASPAPGPSSAASATLPVVGTLLGASAASLIAYCL 58
          AC   +  AAS++ V+A++E  +PAPGP+SAASA LP +G+L+GAS  SL +Y L
Sbjct: 7  ACGV-LFAAASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYYL 60

[Close]

BLAST of CsaV3_4G031450 vs. Swiss-Prot
Match: sp|Q8S2W4|AGP23_ARATH (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2)

HSP 1 Score: 47.8 bits (112), Expect = 5.0e-05
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 3  ACAAFITVAASLSMVLASDEAASPAPGPSSAASATLPVVGTLLGASAASLIAYCL 58
          AC   +  AAS++ V+A++E  +PAPGP+SAASA LP +G+L+GAS  SL +Y L
Sbjct: 7  ACGV-LFAAASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYYL 60

[Close]

BLAST of CsaV3_4G031450 vs. TrEMBL
Match: tr|A0A2K1ZXB0|A0A2K1ZXB0_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G056200v3 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.7e-05
Identity = 33/53 (62.26%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 6  AFITVAASLSMVLASDEAASPAPGPSSAASATLPVVGTLLGASAASLIAYCLQ 59
          A + VAAS+S  LA+DE ++PAP P+S ASATLPVVG+L+GAS  S  AY LQ
Sbjct: 9  AVLVVAASMSAALAADEISAPAPSPTSGASATLPVVGSLIGASLVSFFAYYLQ 61

[Close]

BLAST of CsaV3_4G031450 vs. TrEMBL
Match: tr|A0A2P5F1L3|A0A2P5F1L3_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_125020 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.8e-05
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 6  AFITVAASLSMVLASDEAASPAPGPSSAASATLPVVGTLLGASAASLIAYCL 58
          A I  AASLS V+A++E  +PAPGPSS ASATLPVVG+L+GAS  S  AY L
Sbjct: 48 AVIVAAASLSSVMAANEVLAPAPGPSSGASATLPVVGSLVGASLVSFFAYYL 99

[Close]

BLAST of CsaV3_4G031450 vs. TrEMBL
Match: tr|A0A2P5CAP7|A0A2P5CAP7_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_168770 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.8e-05
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 6  AFITVAASLSMVLASDEAASPAPGPSSAASATLPVVGTLLGASAASLIAYCL 58
          A I  AASLS V+A++E  +PAPGPSS ASATLPVVG+L+GAS  S  AY L
Sbjct: 48 AVIVAAASLSSVMAANEVLAPAPGPSSGASATLPVVGSLVGASLVSFFAYYL 99

[Close]

BLAST of CsaV3_4G031450 vs. TrEMBL
Match: tr|A0A2K1XB13|A0A2K1XB13_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G052000v3 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.7e-05
Identity = 32/53 (60.38%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 6  AFITVAASLSMVLASDEAASPAPGPSSAASATLPVVGTLLGASAASLIAYCLQ 59
          A + VAAS+S  LA+DE ++PAP P+S ASATLPVVG+L+GAS  S  AY  Q
Sbjct: 9  AVLVVAASMSAALAADEVSAPAPSPTSGASATLPVVGSLIGASLVSFFAYYFQ 61

[Close]

BLAST of CsaV3_4G031450 vs. TrEMBL
Match: tr|A0A200QP69|A0A200QP69_9MAGN (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1779g40 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 8.3e-05
Identity = 30/56 (53.57%), Postives = 42/56 (75.00%), Query Frame = 0


Query: 3  ACAAFITVAASLSMVLASDEAASPAPGPSSAASATLPVVGTLLGASAASLIAYCLQ 59
          +CA  I VAAS++  LA+DEA +PAPGP+S A  T+PV+G+L+GAS  S  A+ +Q
Sbjct: 7  SCAVLIAVAASMNAALAADEAHAPAPGPASNAMTTMPVIGSLVGASLVSFFAFYMQ 62

The following BLAST results are available for this feature:

BLAST of CsaV3_4G031450 vs. NCBI nr


Match Name	E-value	Identity	Description
PNT29922.1	2.5e-05	62.26	hypothetical protein POPTR_006G056200v3 [Populus trichocarpa]	[more]
PON58107.1	4.3e-05	65.38	hypothetical protein PanWU01x14_168770 [Parasponia andersonii]	[more]
PON91671.1	4.3e-05	65.38	hypothetical protein TorRG33x02_125020 [Trema orientalis]	[more]
PNS97963.1	5.6e-05	60.38	hypothetical protein POPTR_016G052000v3 [Populus trichocarpa]	[more]
OVA12266.1	1.2e-04	53.57	hypothetical protein BVC80_1779g40 [Macleaya cordata]	[more]

BLAST of CsaV3_4G031450 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G57690.1	2.8e-06	52.73	arabinogalactan protein 23	[more]

BLAST of CsaV3_4G031450 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8S2W4\|AGP23_ARATH	5.0e-05	52.73	Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2	[more]

BLAST of CsaV3_4G031450 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2K1ZXB0\|A0A2K1ZXB0_POPTR	1.7e-05	62.26	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G056200v3 PE=...	[more]
tr\|A0A2P5F1L3\|A0A2P5F1L3_9ROSA	2.8e-05	65.38	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_125020 PE=4 S...	[more]
tr\|A0A2P5CAP7\|A0A2P5CAP7_PARAD	2.8e-05	65.38	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_168770 PE...	[more]
tr\|A0A2K1XB13\|A0A2K1XB13_POPTR	3.7e-05	60.38	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G052000v3 PE=...	[more]
tr\|A0A200QP69\|A0A200QP69_9MAGN	8.3e-05	53.57	Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1779g40 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G031450.1	CsaV3_4G031450.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34672	FAMILY NOT NAMED	coord: 3..58

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G031450	CmoCh07G013410	Cucurbita moschata (Rifu)	cmocucB1001
CsaV3_4G031450	Cla008072	Watermelon (97103) v1	cucwmB348
CsaV3_4G031450	MELO3C009064	Melon (DHL92) v3.5.1	cucmeB343
CsaV3_4G031450	MELO3C009064.2	Melon (DHL92) v3.6.1	cucmedB337

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G031450	Silver-seed gourd	carcucB0314
CsaV3_4G031450	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G031450	Cucumber (Gy14) v1	cgycucB543
CsaV3_4G031450	Cucurbita maxima (Rimu)	cmacucB0799
CsaV3_4G031450	Cucurbita maxima (Rimu)	cmacucB1018
CsaV3_4G031450	Cucurbita moschata (Rifu)	cmocucB0782
CsaV3_4G031450	Cucurbita pepo (Zucchini)	cpecucB0076
CsaV3_4G031450	Cucurbita pepo (Zucchini)	cpecucB0613
CsaV3_4G031450	Wild cucumber (PI 183967)	cpicucB212
CsaV3_4G031450	Bottle gourd (USVL1VR-Ls)	cuclsiB279
CsaV3_4G031450	Watermelon (Charleston Gray)	cucwcgB319
CsaV3_4G031450	Watermelon (97103) v2	cucwmbB308
CsaV3_4G031450	Wax gourd	cucwgoB402
CsaV3_4G031450	Wax gourd	cucwgoB413