MELO3C009064 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C009064
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Lon protease
Location	chr8 : 17987848 .. 17988036 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATGAAGAACTTTGCCTGTGCCGCCTTCATCGCTGTTGTCGCCTCCCTGAGCATGGTTTTGGCCTCTGATGAAGCAGCATCCCCCGCTCCCGGCCCATCCAGCGGTGTTTCCGCTACTTTGCCCGTCGTCGGGACATTGCTAGGTGCATCTGCTGCCTCTCTCATTGCTTACTGCCTTCAGTAA

mRNA sequence

ATGGAAATGAAGAACTTTGCCTGTGCCGCCTTCATCGCTGTTGTCGCCTCCCTGAGCATGGTTTTGGCCTCTGATGAAGCAGCATCCCCCGCTCCCGGCCCATCCAGCGGTGTTTCCGCTACTTTGCCCGTCGTCGGGACATTGCTAGGTGCATCTGCTGCCTCTCTCATTGCTTACTGCCTTCAGTAA

Coding sequence (CDS)

ATGGAAATGAAGAACTTTGCCTGTGCCGCCTTCATCGCTGTTGTCGCCTCCCTGAGCATGGTTTTGGCCTCTGATGAAGCAGCATCCCCCGCTCCCGGCCCATCCAGCGGTGTTTCCGCTACTTTGCCCGTCGTCGGGACATTGCTAGGTGCATCTGCTGCCTCTCTCATTGCTTACTGCCTTCAGTAA

Protein sequence

MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYCLQ*

Homology

[Close]

BLAST of MELO3C009064 vs. Swiss-Prot
Match: AGP23_ARATH (Arabinogalactan peptide 23 OS=Arabidopsis thaliana GN=AGP23 PE=2 SV=2)

HSP 1 Score: 63.5 bits (153), Expect = 9.2e-10
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 1


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60
          MEMK  AC    A  AS++ V+A++E  +PAPGP+S  SA LP +G+L+GAS  SL +Y 
Sbjct: 1  MEMKKIACGVLFAA-ASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYY 60

Query: 61 L 62
          L
Sbjct: 61 L 60

[Close]

BLAST of MELO3C009064 vs. Swiss-Prot
Match: AGP40_ARATH (Probable arabinogalactan protein 40 OS=Arabidopsis thaliana GN=AGP40 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 6.2e-06
Identity = 26/62 (41.94%), Postives = 37/62 (59.68%), Query Frame = 1


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60
          MEMKN   A FI+ V   S+  A+ E+ +P+PG SS  +   PVVG+++ AS ++ +A  
Sbjct: 1  MEMKNIFVALFISAVLVSSVSAATMESPAPSPGASSASTVAFPVVGSIVAASLSAFLALL 60

Query: 61 LQ 63
          LQ
Sbjct: 61 LQ 62

[Close]

BLAST of MELO3C009064 vs. TrEMBL
Match: A0A059DIY4_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_A02403 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 9.9e-11
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 1


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60
          M+MK  +CA  +A  AS+S VLASD++ +PAPGPSSG SA LPV G+L+GAS  S  AY 
Sbjct: 34 MDMKKISCAVLVAA-ASMSAVLASDDSPAPAPGPSSGASAALPVFGSLVGASVVSFFAYY 93

Query: 61 LQ 63
          LQ
Sbjct: 94 LQ 94

[Close]

BLAST of MELO3C009064 vs. TrEMBL
Match: U5G938_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s05490g PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 8.4e-10
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 1


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60
          ME+K  +CA  + V AS+S  LA+DE ++PAP P+SG SATLPVVG+L+GAS  S  AY 
Sbjct: 1  MELKKISCAVLV-VAASMSAALAADEISAPAPSPTSGASATLPVVGSLIGASLVSFFAYY 60

Query: 61 L 62
          L
Sbjct: 61 L 60

[Close]

BLAST of MELO3C009064 vs. TrEMBL
Match: B9HNM7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s06810g PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 5.5e-09
Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 1


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60
          MEMK  ACA   A  AS+S V+A DE A+PAP P+SG SA+LP+VG+L+GAS AS IA  
Sbjct: 1  MEMKKIACAILFAA-ASVSAVMA-DEVAAPAPSPASGASASLPIVGSLVGASLASFIALY 60

Query: 61 LQ 63
          LQ
Sbjct: 61 LQ 60

[Close]

BLAST of MELO3C009064 vs. TrEMBL
Match: F6HL55_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g07980 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 7.1e-09
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 1


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60
          M+MK  +CA  IA  AS+S  +ASDE  SPAPGPS+   ATLPV+G+L+GAS  S  A+ 
Sbjct: 1  MDMKKISCAVLIAA-ASMSAAMASDEVMSPAPGPSNAAQATLPVLGSLVGASVLSFFAFY 60

Query: 61 L 62
          L
Sbjct: 61 L 60

[Close]

BLAST of MELO3C009064 vs. TrEMBL
Match: B9II47_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0016s05250g PE=4 SV=2)

HSP 1 Score: 67.0 bits (162), Expect = 9.3e-09
Identity = 33/62 (53.23%), Postives = 43/62 (69.35%), Query Frame = 1


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60
          M +K  +CA  + V AS+S  LA+DE ++PAP P+SG SATLP VG+L+GAS  S  AY 
Sbjct: 11 MGLKKISCAVLV-VAASMSAALAADEVSAPAPSPTSGASATLPAVGSLIGASLVSFFAYY 70

Query: 61 LQ 63
           Q
Sbjct: 71 FQ 71

[Close]

BLAST of MELO3C009064 vs. TAIR10
Match: AT3G57690.1 (AT3G57690.1 arabinogalactan protein 23)

HSP 1 Score: 63.5 bits (153), Expect = 5.2e-11
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 1


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60
          MEMK  AC    A  AS++ V+A++E  +PAPGP+S  SA LP +G+L+GAS  SL +Y 
Sbjct: 1  MEMKKIACGVLFAA-ASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYY 60

Query: 61 L 62
          L
Sbjct: 61 L 60

[Close]

BLAST of MELO3C009064 vs. TAIR10
Match: AT2G41905.1 (AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1))

HSP 1 Score: 53.9 bits (128), Expect = 4.1e-08
Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 1


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPS-SGVSATLPVVGTLLGASAASLIAY 60
          MEMK  AC    A  AS++ V+A+ E  +PAPGP+ SG S  +P +G+L+GAS  SL AY
Sbjct: 1  MEMKKIACGVVFAA-ASMTAVMAA-EVGAPAPGPAASGASVAVPALGSLVGASLVSLFAY 60

Query: 61 CL 62
           L
Sbjct: 61 YL 60

[Close]

BLAST of MELO3C009064 vs. TAIR10
Match: AT3G20865.1 (AT3G20865.1 arabinogalactan protein 40)

HSP 1 Score: 50.8 bits (120), Expect = 3.5e-07
Identity = 26/62 (41.94%), Postives = 37/62 (59.68%), Query Frame = 1


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60
          MEMKN   A FI+ V   S+  A+ E+ +P+PG SS  +   PVVG+++ AS ++ +A  
Sbjct: 1  MEMKNIFVALFISAVLVSSVSAATMESPAPSPGASSASTVAFPVVGSIVAASLSAFLALL 60

Query: 61 LQ 63
          LQ
Sbjct: 61 LQ 62

[Close]

BLAST of MELO3C009064 vs. NCBI nr
Match: gi|629125825|gb|KCW90250.1| (hypothetical protein EUGRSUZ_A02403, partial [Eucalyptus grandis])

HSP 1 Score: 73.6 bits (179), Expect = 1.4e-10
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 1


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60
          M+MK  +CA  +A  AS+S VLASD++ +PAPGPSSG SA LPV G+L+GAS  S  AY 
Sbjct: 34 MDMKKISCAVLVAA-ASMSAVLASDDSPAPAPGPSSGASAALPVFGSLVGASVVSFFAYY 93

Query: 61 LQ 63
          LQ
Sbjct: 94 LQ 94

[Close]

BLAST of MELO3C009064 vs. NCBI nr
Match: gi|566174626|ref|XP_006381024.1| (hypothetical protein POPTR_0006s05490g [Populus trichocarpa])

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-09
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 1


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60
          ME+K  +CA  + V AS+S  LA+DE ++PAP P+SG SATLPVVG+L+GAS  S  AY 
Sbjct: 1  MELKKISCAVLV-VAASMSAALAADEISAPAPSPTSGASATLPVVGSLIGASLVSFFAYY 60

Query: 61 L 62
          L
Sbjct: 61 L 60

[Close]

BLAST of MELO3C009064 vs. NCBI nr
Match: gi|224106059|ref|XP_002314029.1| (hypothetical protein POPTR_0009s06810g [Populus trichocarpa])

HSP 1 Score: 67.8 bits (164), Expect = 7.8e-09
Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 1


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60
          MEMK  ACA   A  AS+S V+A DE A+PAP P+SG SA+LP+VG+L+GAS AS IA  
Sbjct: 1  MEMKKIACAILFAA-ASVSAVMA-DEVAAPAPSPASGASASLPIVGSLVGASLASFIALY 60

Query: 61 LQ 63
          LQ
Sbjct: 61 LQ 60

[Close]

BLAST of MELO3C009064 vs. NCBI nr
Match: gi|566208812|ref|XP_002323305.2| (hypothetical protein POPTR_0016s05250g, partial [Populus trichocarpa])

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-08
Identity = 33/62 (53.23%), Postives = 43/62 (69.35%), Query Frame = 1


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60
          M +K  +CA  + V AS+S  LA+DE ++PAP P+SG SATLP VG+L+GAS  S  AY 
Sbjct: 11 MGLKKISCAVLV-VAASMSAALAADEVSAPAPSPTSGASATLPAVGSLIGASLVSFFAYY 70

Query: 61 LQ 63
           Q
Sbjct: 71 FQ 71

[Close]

BLAST of MELO3C009064 vs. NCBI nr
Match: gi|703130749|ref|XP_010104709.1| (hypothetical protein L484_000818 [Morus notabilis])

HSP 1 Score: 66.2 bits (160), Expect = 2.3e-08
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 1


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60
          MEMK  ACA   A  AS+S V+A+D  A+PAP P+ G SA+LP +G+L+GAS  S +AY 
Sbjct: 1  MEMKKIACAVIFAA-ASVSAVMANDAVAAPAPAPTGGTSASLPALGSLVGASLVSFVAYY 60

Query: 61 L 62
          L
Sbjct: 61 L 60

The following BLAST results are available for this feature:

BLAST of MELO3C009064 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AGP23_ARATH	9.2e-10	50.82	Arabinogalactan peptide 23 OS=Arabidopsis thaliana GN=AGP23 PE=2 SV=2	[more]
AGP40_ARATH	6.2e-06	41.94	Probable arabinogalactan protein 40 OS=Arabidopsis thaliana GN=AGP40 PE=2 SV=1	[more]

BLAST of MELO3C009064 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A059DIY4_EUCGR	9.9e-11	59.68	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_A02403 PE=4 ...	[more]
U5G938_POPTR	8.4e-10	57.38	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s05490g PE=4 SV=1	[more]
B9HNM7_POPTR	5.5e-09	61.29	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s06810g PE=4 SV=1	[more]
F6HL55_VITVI	7.1e-09	55.74	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g07980 PE=4 SV=...	[more]
B9II47_POPTR	9.3e-09	53.23	Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0016s05250g P...	[more]

BLAST of MELO3C009064 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G57690.1	5.2e-11	50.82	arabinogalactan protein 23	[more]
AT2G41905.1	4.1e-08	50.00	BEST Arabidopsis thaliana protein match is: arabinogalactan protein ...	[more]
AT3G20865.1	3.5e-07	41.94	arabinogalactan protein 40	[more]

BLAST of MELO3C009064 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|629125825\|gb\|KCW90250.1\|	1.4e-10	59.68	hypothetical protein EUGRSUZ_A02403, partial [Eucalyptus grandis]	[more]
gi\|566174626\|ref\|XP_006381024.1\|	1.2e-09	57.38	hypothetical protein POPTR_0006s05490g [Populus trichocarpa]	[more]
gi\|224106059\|ref\|XP_002314029.1\|	7.8e-09	61.29	hypothetical protein POPTR_0009s06810g [Populus trichocarpa]	[more]
gi\|566208812\|ref\|XP_002323305.2\|	1.3e-08	53.23	hypothetical protein POPTR_0016s05250g, partial [Populus trichocarpa]	[more]
gi\|703130749\|ref\|XP_010104709.1\|	2.3e-08	54.10	hypothetical protein L484_000818 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C009064T1	MELO3C009064T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34672	FAMILY NOT NAMED	coord: 1..62 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C009064	Cla008072	Watermelon (97103) v1	mewmB588
MELO3C009064	CsaV3_4G031450	Cucumber (Chinese Long) v3	cucmeB343

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C009064	Cucumber (Gy14) v1	cgymeB576
MELO3C009064	Cucumber (Gy14) v1	cgymeB577
MELO3C009064	Cucurbita maxima (Rimu)	cmameB613
MELO3C009064	Cucurbita maxima (Rimu)	cmameB810
MELO3C009064	Cucurbita moschata (Rifu)	cmomeB601
MELO3C009064	Cucurbita moschata (Rifu)	cmomeB610
MELO3C009064	Cucurbita moschata (Rifu)	cmomeB794
MELO3C009064	Wild cucumber (PI 183967)	cpimeB341
MELO3C009064	Cucumber (Chinese Long) v2	cumeB336
MELO3C009064	Watermelon (Charleston Gray)	mewcgB526
MELO3C009064	Cucurbita pepo (Zucchini)	cpemeB072
MELO3C009064	Cucurbita pepo (Zucchini)	cpemeB451
MELO3C009064	Bottle gourd (USVL1VR-Ls)	lsimeB152
MELO3C009064	Cucumber (Gy14) v2	cgybmeB285
MELO3C009064	Silver-seed gourd	carmeB0288
MELO3C009064	Watermelon (97103) v2	mewmbB534
MELO3C009064	Wax gourd	mewgoB642