CsaV3_4G029380 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G029380
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	10 kDa chaperonin-like
Location	chr4 : 18887744 .. 18890830 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCATCTATATTAACGTGGAACGAGTAGAGTTAGGAAAACTAAATGCGATCTAAGAACTTACCAGAACGCTGGAGGGGATTTGCTAAATACGAAAGTACCCACAAAACTTCATGGTCCACCAATGTCTATTTACGTAATTTAAACATTGAAGGGTGAAGGCTGCAAAAACCCCTCCTAAACCCTAGACCATTCTTTGTTTTAGGGTTTGAAGTTGAGATTCATTTTCTCTGATTGCTTCAGATGGCTAAACGTTTGCTTCCATTGCTGAATCGCGTTCTGATCGAGAAGATCGTTCCCCCTACCAAGACCAATTCCGGCATTTTGCTTCCTGAGAAGTCCACTAAGGTGAATCTTCCTTCCCTCTCTCCCCCATTTCTTTTTCCATTTCCCTTCAAACAAAATGTTCGTTACTTTGTATGGAATTCGTCGGAAATTCCATTTCCCCTTTCCTTTTCGTTGTTTTCTTACCCTGATTCTCGAAATTTGCGACACTGAATTCTCTGGGACGACTACACTCGTTTTCTTTCATGGGTATTCTTCTAGTGTCATTTCCGTTTATGCCTATTTTCTTTTTTTGCCTTTTCTCGTTTAATAGTTACTTGGGTTTTTTAGCTCATTTATTGGTTCTCTGATTCATTTCAATATTAACCTATTTAAAGAAGACTTTTAATGTGAATGTTTTCATTTCTTCCTGATTTCAGTGTTAGCGAATGTTCAGTGATGCGATTTGTAACAAACTTTCTCTTTTTTAAGAACGATTGCTTAACAGTTAACGTAGATGTGGATGTAGCTGCTGAACTGTGTGCATGGGATTAATCCGATGCGATCTTTTATTTATTTATTTATTTTCAGCAGAAATCTATATTAGTTCATAAGGATTTTTTTTTTCCGTGGATGAGCTTTGCTGAATAACTTTGATTTAGGGGCCCTTCCTTCCATCAGGATTTTTTTAGATTCAGAATGATTCGACTATTTTGCTCATGATAAGTTTAAGTAGTCCATGGATTCTGGCTTGTGTTTTATAACTTAACTCCCTGCATTAGAAGGACTAAATTAGCAAAACCTTTCTTCCTGGAATAGTATTTCTGAGTTGTCGAAGGTGGTTGTTATGAGTCTTATGTTTTCATTTTGCATTTTGAAGAGTTTTTGTAAGGTTAGATACTATCATGCATGGTTGGGTCCCCTTTCTCTAGTGGGCTCCCATTTTTTGGTTGAATTTTTTATGCTACTATATCTTTTCATTTTTTTCCTCAATCAAAGTTGTTATAGAAGAAAAAAAGTTGTTGTGACAGTTCAGCTCAGCTTTGTTACTCAATTTGTGGATGTTTATCGTGTCTTTTTTACTTATTTTTGTTCCTCAACTAGCTCAACTCTGGAAAAGTTATCGCTGTTGGTCCTGGGGCTCGTGACAGAGAGGGAAAGATTATTCCTATCTCTGTAAAGGAAGGTGACATGGTTCTCCTACCAGAATATGGAGGAAATGAAGTCAAGCTTGGAGAAAAGCAGTATGTATACCTGTTCTATTGCTTTATTTATTTAGTTTTTGTCTGTTATTTGATCAAGAATTTGGTTTTAAAGTTAACCTGGAAGTTGAAGTGCCCTCAATTTCTCCATATGGCCTAGTCTTTGATCGTTTTTTAAGATTTTGTTGCTCTTGAACTTGCATGCTGTGCTGAACTTTTGGCTGTATTCTGGTGTTGTCAAATTTTTTTGTTGTTGACCGGTTTACTCTGGCTTGGTCAATTCACGGTTATCTTTGATGTGTCAAGAAATTTTTTTTTATTGTTTGGTACTGCATTATCAGCTGTTTGCTAAGACCTTGAAAACTAGTTTTGATGGTTCTCATCAGCAGTTGGGTTGGGTTAGACTAGACTGTTGTCGATTGCTTTGAGTTAGAATAGTCAGCTATAGGGATTGCCTTGTTTTAATAACTCTAAGCATTGTGTCAGTTAACTTTTCCATGAACAAAGAACAAAACCATAAATCTACAATAATGTATTTTTTTTTGTTCTGAAATTCTGATTTAAATTCAACGCTAACTTGAGGCTGCTGATGCTGGATATGGAGACATAAGCTCAGTAACTGTAATTACTTACGAATTTAGACTATTATTGAATTATCTTCCACCCTTTGGTAGGCCGTTTAATGATCTTTGTGTAAAGGTTAAATATATGTTTTATCCCTCAGTTTTGGTTAAAGATTTTTCTAGTTAATCCTTAACATGTTAAAAATTTTCAATTATAACCTTTATGTTAAGTGTATGTTATATCTCATTACATATAGTTGATGGTAAGTTTATGTGATATGGTACTTGTTGGGTTAGTAGAATTTTATGAAAGGATTCAAGTCATATAAGACTATAAGAGGAAATTTTCTAAGTAGACATCATTTTCGCTCCTTAACCCTCAGTTTTCACTCCAAATTTTTGCCAATTGACCAAGTGTCATGGCACCTATTCTGATAATTAACCATAATTACTAACGAAAGTGGTAAACATAAAGACCACATTGGAAACATTTGAATTGAAACGAGGACCAAATTGAAATAATATGCAACAAACATGAAGCACTGAAACATACATCTAGTCTTTTATTCAAATACAAGTCCCTTGTGTTGACAATTCGGATTGGCCACTTTTCTTTTATTTGGAGGGCTGTTTCTTCTCTCTACTTAATTGCTGGTGAATGATTTTGTCGTTTGATTTCAGGTTCTATCTATTCCGCGACGAAGATCTATTAGGAACACTTCATGATTGATTGATCTTGTGAAAGTTGGAATGTTTTTCCAAGTCTTAAGCTTCGAGATCTAGAGAGCTATTTTCTGTTGTTTTTACTTGAGTGAGACTTTGATAACATATATTTACGGTCAGAAGACAAAATATTATATGAATTTTTGGTATTTCTCACTCAAACATTTTTTAGGAATCTTGTACGATTGTTGTGCTATTTCTACTTTACCTCATGTCTGACTATAGAGATATATTGATTTGGGTGTGAGATAATTAGTTCAAAATGGTTTTTTGATTTAAAGATATGGGAGCACTTTGAAATTGAATCAATGAAATAATTTTCAAGTAATTTTGTTG

mRNA sequence

ATGGCTAAACGTTTGCTTCCATTGCTGAATCGCGTTCTGATCGAGAAGATCGTTCCCCCTACCAAGACCAATTCCGGCATTTTGCTTCCTGAGAAGTCCACTAAGCTCAACTCTGGAAAAGTTATCGCTGTTGGTCCTGGGGCTCGTGACAGAGAGGGAAAGATTATTCCTATCTCTGTAAAGGAAGGTGACATGGTTCTCCTACCAGAATATGGAGGAAATGAAGTCAAGCTTGGAGAAAAGCAGTTCTATCTATTCCGCGACGAAGATCTATTAGGAACACTTCATGATTGA

Coding sequence (CDS)

ATGGCTAAACGTTTGCTTCCATTGCTGAATCGCGTTCTGATCGAGAAGATCGTTCCCCCTACCAAGACCAATTCCGGCATTTTGCTTCCTGAGAAGTCCACTAAGCTCAACTCTGGAAAAGTTATCGCTGTTGGTCCTGGGGCTCGTGACAGAGAGGGAAAGATTATTCCTATCTCTGTAAAGGAAGGTGACATGGTTCTCCTACCAGAATATGGAGGAAATGAAGTCAAGCTTGGAGAAAAGCAGTTCTATCTATTCCGCGACGAAGATCTATTAGGAACACTTCATGATTGA

Protein sequence

MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSTKLNSGKVIAVGPGARDREGKIIPISVKEGDMVLLPEYGGNEVKLGEKQFYLFRDEDLLGTLHD

Homology

[Close]

BLAST of CsaV3_4G029380 vs. NCBI nr
Match: XP_004144325.1 (PREDICTED: 10 kDa chaperonin-like [Cucumis sativus] >KGN54688.1 hypothetical protein Csa_4G426760 [Cucumis sativus])

HSP 1 Score: 193.7 bits (491), Expect = 2.9e-46
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSTKLNSGKVIAVGPGARDREGKIIPISV 60
          MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSTKLNSGKVIAVGPGARDREGKIIPISV
Sbjct: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSTKLNSGKVIAVGPGARDREGKIIPISV 60

Query: 61 KEGDMVLLPEYGGNEVKLGEKQFYLFRDEDLLGTLHD 98
          KEGDMVLLPEYGGNEVKLGEKQFYLFRDEDLLGTLHD
Sbjct: 61 KEGDMVLLPEYGGNEVKLGEKQFYLFRDEDLLGTLHD 97

[Close]

BLAST of CsaV3_4G029380 vs. NCBI nr
Match: XP_008455733.1 (PREDICTED: 10 kDa chaperonin-like [Cucumis melo])

HSP 1 Score: 189.1 bits (479), Expect = 7.0e-45
Identity = 94/97 (96.91%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSTKLNSGKVIAVGPGARDREGKIIPISV 60
          MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKS+KLNSGKVIAVGPGARDREGKIIPISV
Sbjct: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSSKLNSGKVIAVGPGARDREGKIIPISV 60

Query: 61 KEGDMVLLPEYGGNEVKLGEKQFYLFRDEDLLGTLHD 98
          KEGD+VLLPEYGGNEVKLGEKQFYLFRDEDLLGTLH+
Sbjct: 61 KEGDIVLLPEYGGNEVKLGEKQFYLFRDEDLLGTLHE 97

[Close]

BLAST of CsaV3_4G029380 vs. NCBI nr
Match: XP_022966634.1 (10 kDa chaperonin, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 172.9 bits (437), Expect = 5.2e-40
Identity = 84/97 (86.60%), Postives = 91/97 (93.81%), Query Frame = 0


Query: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSTKLNSGKVIAVGPGARDREGKIIPISV 60
          MAKRL+PLLNRVLIEKIVPP KTNSGILLPEKS+KLNSGKVI+VGPG RDR+G IIP+ V
Sbjct: 1  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGKVISVGPGTRDRDGNIIPVIV 60

Query: 61 KEGDMVLLPEYGGNEVKLGEKQFYLFRDEDLLGTLHD 98
          KEG+ VLLPEYGG EVKLGEKQFYLFRDEDLLGTLH+
Sbjct: 61 KEGETVLLPEYGGTEVKLGEKQFYLFRDEDLLGTLHE 97

[Close]

BLAST of CsaV3_4G029380 vs. NCBI nr
Match: XP_022931931.1 (10 kDa chaperonin, mitochondrial-like [Cucurbita moschata] >XP_023517291.1 10 kDa chaperonin, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171.8 bits (434), Expect = 1.2e-39
Identity = 83/97 (85.57%), Postives = 91/97 (93.81%), Query Frame = 0


Query: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSTKLNSGKVIAVGPGARDREGKIIPISV 60
          MAKRL+PLLNRVLIEKIVPP KTNSGILLPEKS+KLNSGKVI+VGPG RDR+G IIP+ V
Sbjct: 1  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGKVISVGPGTRDRDGNIIPVVV 60

Query: 61 KEGDMVLLPEYGGNEVKLGEKQFYLFRDEDLLGTLHD 98
          KEG+ VLLPEYGG EVKLGEKQFYL+RDEDLLGTLH+
Sbjct: 61 KEGETVLLPEYGGTEVKLGEKQFYLYRDEDLLGTLHE 97

[Close]

BLAST of CsaV3_4G029380 vs. NCBI nr
Match: XP_010045089.1 (PREDICTED: 10 kDa chaperonin [Eucalyptus grandis] >KCW87241.1 hypothetical protein EUGRSUZ_B03754 [Eucalyptus grandis])

HSP 1 Score: 171.0 bits (432), Expect = 2.0e-39
Identity = 80/97 (82.47%), Postives = 94/97 (96.91%), Query Frame = 0


Query: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSTKLNSGKVIAVGPGARDREGKIIPISV 60
          MAKRL+P LNRVLIEKIVPP+KTN+GILLPEK+TKLNSGKV+AVGPGARD++GKIIP+SV
Sbjct: 1  MAKRLIPTLNRVLIEKIVPPSKTNTGILLPEKTTKLNSGKVMAVGPGARDKDGKIIPVSV 60

Query: 61 KEGDMVLLPEYGGNEVKLGEKQFYLFRDEDLLGTLHD 98
          KEG+ VLLPEYGG EVKLGEK+++L+RDED+LGTLHD
Sbjct: 61 KEGETVLLPEYGGTEVKLGEKEYHLYRDEDILGTLHD 97

[Close]

BLAST of CsaV3_4G029380 vs. TAIR10
Match: AT1G23100.1 (GroES-like family protein)

HSP 1 Score: 156.4 bits (394), Expect = 9.2e-39
Identity = 73/97 (75.26%), Postives = 89/97 (91.75%), Query Frame = 0


Query: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSTKLNSGKVIAVGPGARDREGKIIPISV 60
          MAKRL+P LNRVL+EKI+PP+KT SGILLPEKS++LNSG+VIAVGPGARDR G +IP+SV
Sbjct: 1  MAKRLIPTLNRVLVEKILPPSKTVSGILLPEKSSQLNSGRVIAVGPGARDRAGNLIPVSV 60

Query: 61 KEGDMVLLPEYGGNEVKLGEKQFYLFRDEDLLGTLHD 98
          KEGD VLLPE+GG +VKLGEK+F L+RDED++ TLH+
Sbjct: 61 KEGDNVLLPEFGGTQVKLGEKEFLLYRDEDIMATLHE 97

[Close]

BLAST of CsaV3_4G029380 vs. TAIR10
Match: AT1G14980.1 (chaperonin 10)

HSP 1 Score: 155.6 bits (392), Expect = 1.6e-38
Identity = 69/97 (71.13%), Postives = 88/97 (90.72%), Query Frame = 0


Query: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSTKLNSGKVIAVGPGARDREGKIIPISV 60
          M KRL+P  NR+L+++++ P KT SGILLPEKS+KLNSGKVIAVGPG+RD++GK+IP+SV
Sbjct: 1  MMKRLIPTFNRILVQRVIQPAKTESGILLPEKSSKLNSGKVIAVGPGSRDKDGKLIPVSV 60

Query: 61 KEGDMVLLPEYGGNEVKLGEKQFYLFRDEDLLGTLHD 98
          KEGD VLLPEYGG +VKLGE +++LFRDED+LGTLH+
Sbjct: 61 KEGDTVLLPEYGGTQVKLGENEYHLFRDEDVLGTLHE 97

[Close]

BLAST of CsaV3_4G029380 vs. TAIR10
Match: AT5G20720.1 (chaperonin 20)

HSP 1 Score: 62.8 bits (151), Expect = 1.4e-10
Identity = 40/95 (42.11%), Postives = 53/95 (55.79%), Query Frame = 0


Query: 3   KRLLPLLNRVLIEKIVPPTKTNSGILLPEKS-TKLNSGKVIAVGPGARDREGKIIPISVK 62
           K L PL +RV I+      KT  G+LL E +  K + G VIAVGPG+ D EGKI P+ V 
Sbjct: 158 KDLKPLNDRVFIKVAEAEEKTAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPVS 217

Query: 63  EGDMVLLPEYGGNEVKLGEKQFYL-FRDEDLLGTL 96
            G  VL  +Y GN+ K  +   Y+  R  D++  L
Sbjct: 218 TGSTVLYSKYAGNDFKGKDGSNYIALRASDVMAIL 252

[Close]

BLAST of CsaV3_4G029380 vs. Swiss-Prot
Match: sp|P34893|CH10_ARATH (10 kDa chaperonin, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=CPN10 PE=1 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.8e-37
Identity = 69/97 (71.13%), Postives = 88/97 (90.72%), Query Frame = 0


Query: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSTKLNSGKVIAVGPGARDREGKIIPISV 60
          M KRL+P  NR+L+++++ P KT SGILLPEKS+KLNSGKVIAVGPG+RD++GK+IP+SV
Sbjct: 1  MMKRLIPTFNRILVQRVIQPAKTESGILLPEKSSKLNSGKVIAVGPGSRDKDGKLIPVSV 60

Query: 61 KEGDMVLLPEYGGNEVKLGEKQFYLFRDEDLLGTLHD 98
          KEGD VLLPEYGG +VKLGE +++LFRDED+LGTLH+
Sbjct: 61 KEGDTVLLPEYGGTQVKLGENEYHLFRDEDVLGTLHE 97

[Close]

BLAST of CsaV3_4G029380 vs. Swiss-Prot
Match: sp|Q96539|CH10_BRANA (10 kDa chaperonin OS=Brassica napus OX=3708 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 4.8e-37
Identity = 69/97 (71.13%), Postives = 88/97 (90.72%), Query Frame = 0


Query: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSTKLNSGKVIAVGPGARDREGKIIPISV 60
          M KRL+P  NR+L++ ++ P KT SGILLPEK++KLNSGKVIAVGPG+RD++GK+IP+SV
Sbjct: 1  MMKRLIPTFNRILVQGVIQPAKTESGILLPEKASKLNSGKVIAVGPGSRDKDGKLIPVSV 60

Query: 61 KEGDMVLLPEYGGNEVKLGEKQFYLFRDEDLLGTLHD 98
          KEGD VLLPEYGG +VKLGEK+++LFRDED+LGTLH+
Sbjct: 61 KEGDTVLLPEYGGTQVKLGEKEYHLFRDEDVLGTLHE 97

[Close]

BLAST of CsaV3_4G029380 vs. Swiss-Prot
Match: sp|O59804|CH10_SCHPO (10 kDa heat shock protein, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=hsp10 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 8.3e-21
Identity = 49/97 (50.52%), Postives = 72/97 (74.23%), Query Frame = 0


Query: 2   AKRLLPLLNRVLIEKIVPPTKTNSGILLPEKST-KLNSGKVIAVGPGARDREGKIIPISV 61
           AK ++PLL+R+L+++I   TKT SGI LPEKS  KL+ G+VI+VG G  ++EGK+   SV
Sbjct: 8   AKSIVPLLDRILVQRIKADTKTASGIFLPEKSVEKLSEGRVISVGKGGYNKEGKLAQPSV 67

Query: 62  KEGDMVLLPEYGGNEVKLGEKQFYLFRDEDLLGTLHD 98
             GD VLLP YGG+ +K+GE+++ L+RD +LL  + +
Sbjct: 68  AVGDRVLLPAYGGSNIKVGEEEYSLYRDHELLAIIKE 104

[Close]

BLAST of CsaV3_4G029380 vs. Swiss-Prot
Match: sp|Q9W6X3|CH10_ORYLA (10 kDa heat shock protein, mitochondrial OS=Oryzias latipes OX=8090 GN=hspe1 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.1e-20
Identity = 47/96 (48.96%), Postives = 71/96 (73.96%), Query Frame = 0


Query: 3  KRLLPLLNRVLIEKIVPPTKTNSGILLPEKST-KLNSGKVIAVGPGARDREGKIIPISVK 62
          ++ LPL +RVL+E+++  T T  GI+LPEKS  K+    V+AVGPG+ +++G++ P+SVK
Sbjct: 4  RKFLPLFDRVLVERLMAETVTKGGIMLPEKSQGKVLQATVVAVGPGSMNQKGEVQPMSVK 63

Query: 63 EGDMVLLPEYGGNEVKLGEKQFYLFRDEDLLGTLHD 98
           G+ VLLP+YGG +V L +K ++LFRD D+LG   D
Sbjct: 64 VGEKVLLPQYGGTKVVLEDKDYFLFRDADILGKYVD 99

[Close]

BLAST of CsaV3_4G029380 vs. Swiss-Prot
Match: sp|Q64433|CH10_MOUSE (10 kDa heat shock protein, mitochondrial OS=Mus musculus OX=10090 GN=Hspe1 PE=1 SV=2)

HSP 1 Score: 98.6 bits (244), Expect = 4.1e-20
Identity = 49/96 (51.04%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 3   KRLLPLLNRVLIEKIVPPTKTNSGILLPEKST-KLNSGKVIAVGPGARDREGKIIPISVK 62
           ++ LPL +RVL+E+    T T  GI+LPEKS  K+    V+AVG G + + G+I P+SVK
Sbjct: 7   RKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGGKGKSGEIEPVSVK 66

Query: 63  EGDMVLLPEYGGNEVKLGEKQFYLFRDEDLLGTLHD 98
            GD VLLPEYGG +V L +K ++LFRD D+LG   D
Sbjct: 67  VGDKVLLPEYGGTKVVLDDKDYFLFRDSDILGKYVD 102

[Close]

BLAST of CsaV3_4G029380 vs. TrEMBL
Match: tr|A0A0A0KYT6|A0A0A0KYT6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G426760 PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.9e-46
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSTKLNSGKVIAVGPGARDREGKIIPISV 60
          MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSTKLNSGKVIAVGPGARDREGKIIPISV
Sbjct: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSTKLNSGKVIAVGPGARDREGKIIPISV 60

Query: 61 KEGDMVLLPEYGGNEVKLGEKQFYLFRDEDLLGTLHD 98
          KEGDMVLLPEYGGNEVKLGEKQFYLFRDEDLLGTLHD
Sbjct: 61 KEGDMVLLPEYGGNEVKLGEKQFYLFRDEDLLGTLHD 97

[Close]

BLAST of CsaV3_4G029380 vs. TrEMBL
Match: tr|A0A1S3C2U3|A0A1S3C2U3_CUCME (10 kDa chaperonin-like OS=Cucumis melo OX=3656 GN=LOC103495836 PE=3 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 4.7e-45
Identity = 94/97 (96.91%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSTKLNSGKVIAVGPGARDREGKIIPISV 60
          MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKS+KLNSGKVIAVGPGARDREGKIIPISV
Sbjct: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSSKLNSGKVIAVGPGARDREGKIIPISV 60

Query: 61 KEGDMVLLPEYGGNEVKLGEKQFYLFRDEDLLGTLHD 98
          KEGD+VLLPEYGGNEVKLGEKQFYLFRDEDLLGTLH+
Sbjct: 61 KEGDIVLLPEYGGNEVKLGEKQFYLFRDEDLLGTLHE 97

[Close]

BLAST of CsaV3_4G029380 vs. TrEMBL
Match: tr|A0A059D9Z0|A0A059D9Z0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03754 PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.3e-39
Identity = 80/97 (82.47%), Postives = 94/97 (96.91%), Query Frame = 0


Query: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSTKLNSGKVIAVGPGARDREGKIIPISV 60
          MAKRL+P LNRVLIEKIVPP+KTN+GILLPEK+TKLNSGKV+AVGPGARD++GKIIP+SV
Sbjct: 1  MAKRLIPTLNRVLIEKIVPPSKTNTGILLPEKTTKLNSGKVMAVGPGARDKDGKIIPVSV 60

Query: 61 KEGDMVLLPEYGGNEVKLGEKQFYLFRDEDLLGTLHD 98
          KEG+ VLLPEYGG EVKLGEK+++L+RDED+LGTLHD
Sbjct: 61 KEGETVLLPEYGGTEVKLGEKEYHLYRDEDILGTLHD 97

[Close]

BLAST of CsaV3_4G029380 vs. TrEMBL
Match: tr|A0A2H3XPF8|A0A2H3XPF8_PHODC (10 kDa chaperonin-like OS=Phoenix dactylifera OX=42345 GN=LOC103705046 PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.3e-39
Identity = 78/97 (80.41%), Postives = 94/97 (96.91%), Query Frame = 0


Query: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSTKLNSGKVIAVGPGARDREGKIIPISV 60
          MAKRL+P LNRVL+EKIVPP+KTN+GILLPEK+TKLNSGKV+AVGPGARDR+G +IP+SV
Sbjct: 1  MAKRLIPSLNRVLVEKIVPPSKTNAGILLPEKTTKLNSGKVVAVGPGARDRDGNVIPVSV 60

Query: 61 KEGDMVLLPEYGGNEVKLGEKQFYLFRDEDLLGTLHD 98
          KEGDMVLLPEYGG EVKLG+K+++LFRD+D+LGTLH+
Sbjct: 61 KEGDMVLLPEYGGTEVKLGDKEYHLFRDDDILGTLHE 97

[Close]

BLAST of CsaV3_4G029380 vs. TrEMBL
Match: tr|A0A251N885|A0A251N885_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G030600 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 5.0e-39
Identity = 78/97 (80.41%), Postives = 93/97 (95.88%), Query Frame = 0


Query: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSTKLNSGKVIAVGPGARDREGKIIPISV 60
          MAKRL+PLLNRVL+EKIVPP+KTN+GILLPEKSTKLNSGKV+AVG G RD+EGK IP++V
Sbjct: 1  MAKRLVPLLNRVLVEKIVPPSKTNAGILLPEKSTKLNSGKVVAVGHGVRDKEGKFIPVTV 60

Query: 61 KEGDMVLLPEYGGNEVKLGEKQFYLFRDEDLLGTLHD 98
          KEGD VLLP+YGGNEVKLG+K+++L+RDED+LGTLHD
Sbjct: 61 KEGDTVLLPDYGGNEVKLGDKEYHLYRDEDILGTLHD 97

The following BLAST results are available for this feature:

BLAST of CsaV3_4G029380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144325.1	2.9e-46	100.00	PREDICTED: 10 kDa chaperonin-like [Cucumis sativus] >KGN54688.1 hypothetical pro...	[more]
XP_008455733.1	7.0e-45	96.91	PREDICTED: 10 kDa chaperonin-like [Cucumis melo]	[more]
XP_022966634.1	5.2e-40	86.60	10 kDa chaperonin, mitochondrial-like [Cucurbita maxima]	[more]
XP_022931931.1	1.2e-39	85.57	10 kDa chaperonin, mitochondrial-like [Cucurbita moschata] >XP_023517291.1 10 kD...	[more]
XP_010045089.1	2.0e-39	82.47	PREDICTED: 10 kDa chaperonin [Eucalyptus grandis] >KCW87241.1 hypothetical prote...	[more]

BLAST of CsaV3_4G029380 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G23100.1	9.2e-39	75.26	GroES-like family protein	[more]
AT1G14980.1	1.6e-38	71.13	chaperonin 10	[more]
AT5G20720.1	1.4e-10	42.11	chaperonin 20	[more]

BLAST of CsaV3_4G029380 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P34893\|CH10_ARATH	2.8e-37	71.13	10 kDa chaperonin, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=CPN10 PE=1 S...	[more]
sp\|Q96539\|CH10_BRANA	4.8e-37	71.13	10 kDa chaperonin OS=Brassica napus OX=3708 PE=3 SV=1	[more]
sp\|O59804\|CH10_SCHPO	8.3e-21	50.52	10 kDa heat shock protein, mitochondrial OS=Schizosaccharomyces pombe (strain 97...	[more]
sp\|Q9W6X3\|CH10_ORYLA	3.1e-20	48.96	10 kDa heat shock protein, mitochondrial OS=Oryzias latipes OX=8090 GN=hspe1 PE=...	[more]
sp\|Q64433\|CH10_MOUSE	4.1e-20	51.04	10 kDa heat shock protein, mitochondrial OS=Mus musculus OX=10090 GN=Hspe1 PE=1 ...	[more]

BLAST of CsaV3_4G029380 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KYT6\|A0A0A0KYT6_CUCSA	1.9e-46	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G426760 PE=3 SV=1	[more]
tr\|A0A1S3C2U3\|A0A1S3C2U3_CUCME	4.7e-45	96.91	10 kDa chaperonin-like OS=Cucumis melo OX=3656 GN=LOC103495836 PE=3 SV=1	[more]
tr\|A0A059D9Z0\|A0A059D9Z0_EUCGR	1.3e-39	82.47	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03754 PE=3 SV...	[more]
tr\|A0A2H3XPF8\|A0A2H3XPF8_PHODC	1.3e-39	80.41	10 kDa chaperonin-like OS=Phoenix dactylifera OX=42345 GN=LOC103705046 PE=3 SV=1	[more]
tr\|A0A251N885\|A0A251N885_PRUPE	5.0e-39	80.41	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G030600 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006457	protein folding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

Vocabulary: **INTERPRO**
Term	Definition
IPR011032	GroES-like_sf
IPR018369	Chaprnonin_Cpn10_CS
IPR037124	Chaperonin_GroES_sf
IPR020818	Chaperonin_GroES

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
biological_process	GO:0051085	chaperone mediated protein folding requiring cofactor
biological_process	GO:0006986	response to unfolded protein
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005759	mitochondrial matrix
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0051087	chaperone binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0051082	unfolded protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G029380.1	CsaV3_4G029380.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020818	GroES chaperonin family	PRINTS	PR00297	CHAPERONIN10	coord: 5..20 score: 31.71 coord: 26..47 score: 39.2 coord: 61..73 score: 50.4 coord: 82..95 score: 22.62
IPR020818	GroES chaperonin family	SMART	SM00883	Cpn10_2	coord: 4..95 e-value: 1.9E-31 score: 120.5
IPR020818	GroES chaperonin family	PFAM	PF00166	Cpn10	coord: 6..94 e-value: 4.9E-25 score: 87.3
IPR020818	GroES chaperonin family	PANTHER	PTHR10772	10 KDA HEAT SHOCK PROTEIN	coord: 1..96
IPR020818	GroES chaperonin family	CDD	cd00320	cpn10	coord: 4..95 e-value: 8.97653E-32 score: 107.593
IPR037124	GroES chaperonin superfamily	GENE3D	G3DSA:2.30.33.40		coord: 1..97 e-value: 2.7E-34 score: 119.2
None	No IPR available	PANTHER	PTHR10772:SF25	10 KDA CHAPERONIN	coord: 1..96
IPR018369	Chaperonin GroES, conserved site	PROSITE	PS00681	CHAPERONINS_CPN10	coord: 5..29
IPR011032	GroES-like superfamily	SUPERFAMILY	SSF50129	GroES-like	coord: 3..96

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G029380	CSPI04G18990	Wild cucumber (PI 183967)	cpicucB212
CsaV3_4G029380	Cucsa.358500	Cucumber (Gy14) v1	cgycucB544
CsaV3_4G029380	CmaCh07G010950	Cucurbita maxima (Rimu)	cmacucB1021
CsaV3_4G029380	CmoCh07G011440	Cucurbita moschata (Rifu)	cmocucB1005
CsaV3_4G029380	Cp4.1LG19g02510	Cucurbita pepo (Zucchini)	cpecucB0599
CsaV3_4G029380	CsGy4G017990	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G029380	Carg13312	Silver-seed gourd	carcucB0616
CsaV3_4G029380	Cla012094	Watermelon (97103) v1	cucwmB358
CsaV3_4G029380	MELO3C019112	Melon (DHL92) v3.5.1	cucmeB337
CsaV3_4G029380	ClCG04G005740	Watermelon (Charleston Gray)	cucwcgB321
CsaV3_4G029380	MELO3C019112.2	Melon (DHL92) v3.6.1	cucmedB330
CsaV3_4G029380	Cla97C04G072300	Watermelon (97103) v2	cucwmbB310
CsaV3_4G029380	Bhi03G002060	Wax gourd	cucwgoB412

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G029380	Cucurbita maxima (Rimu)	cmacucB0798
CsaV3_4G029380	Cucurbita pepo (Zucchini)	cpecucB0078
CsaV3_4G029380	Bottle gourd (USVL1VR-Ls)	cuclsiB273