CsaV3_4G029180 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G029180
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	E3 ubiquitin-protein ligase RING1-like
Location	chr4 : 18679570 .. 18682864 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAAGAGGAGGATGGCATTGGCATAGAATGCAAAGTAAAAGAATGTTTTGTAGTTGAAAGGATTATAAATAATATAAACCACAAATTAGAAAGCATAAAGTCCAATCAATTAAAATAAAAGAAACAAACAATAATAAAAATAAATAAATAAATAAAAGAGGGAGAGAGAAAATAAAAATAGAAAATGAAAATGAAAACAAAAGGTCACGTCGCTCATCTCTCGACCTCGTAGCCCAAAGCCTGGGTTAACCCATCCGCTCTGTCGTCGTCTTCTTCTTCTTCTTCTCTCTCTCTCTCTCTCTTCTCTCTGTTTGTTCAGTTCAAGAAAAAGGAAATTGGGTTGATCCACTTTTCTCTTTCGTCTTCCTAAAGGTGAATTTCTGCTGCTAACCATTTTCTAGGGTTACCTTTTCCTCCACCTTTTTCTGCAATTCAATGCCTCTCTTAACAGTTTAACCCTCTTTTTCTGTCTCTTTTCTCGTTTTCAGTTTGCGGGTCTTTGTTGTTTTCAATCTTTGTTGCTTTGAGATTTTTGGGGAATTTATTGAAATGGGTGGGTACTGTTTGGATCTTTGTTGGTGGGTGTCTTTCATTGGTTTCTGTGGCTTATTTGGAGTGAAAGTATTGAGTTGGGTTGGGCTTTTACGCTGTCTGTAGTGGGAACTTTTGAAGTTGTGTTCTTGTATGCTTTGTTTGGACTATGGAATATAGTTTCAATTTTTTTTTTCGTTTCTTACTCTGTATTTGGTGAAATTGGTCTCAACTTGGGTAGAAATTAATGCCCTCGACTAAGTTAAGCTCTCATTTTTCTATTTCTTTTAAGAATTTGGCTAATTATATAGTGATTTATGCGGCTGGAGTAGAATGTTTTTGTGACTGTTGTTGGGATTTGGACATTTATGTGTTTACATTTTTTGTTGTTCTGTTGGATGAATTTGGTATGATTGATTTATTTCAATCTTTACTCAATCGTGAGTATTTTTTTATAGAGTTTTTAGAAGTATTAGTTGTACCCTTTTTTCGATAGTGTACAATTTCCCGACTTTAGTGTAGTCCAAGTGGTTAAGACAATGCTCTCAACTAAGAGGGCTAAAGATAGGTTCGAATCATTAACCCCCTTGTTTTTGTTTTACTAAGAATTAAACAAAAAACAAACGAACAAGATTGAGTCATTTTGTGTTCTTTTGATCTATCTTCATTTTTATGTGGACAGAGTTCAATACTAAGAACTGAGATATTTCATGAGATTTTGGGCACTTTTTGTCTGAAGAGTATGTCCCCATCTTTCCATAGTTAAACAAGGATAGTTAGACTGAAGATGAGTAGGCCTAACAGTCTGTATGCTTGCTAGCAGCCATGTAATTTCATCAGACCGGAGTCCTTTTGTAAATTTTCCATTCATTGCCTTGAAATTTAGCCTAATCTTCTAATGTTTAATTAAAATCTAAAAAATAACATGGAAGTATGGATATCATGTAGGGTTATGTTTGTACAAGTATGTTTTTGTTGAAAATCCAAAAAATGGACTACAAAATGGTAGTCAACAGTGTGGTAGATGAAAAATATGAAGTGTTTGATCTCTGGGTTTTCTGATTGTTATATATGCATAAACGATAAATTTTGTTGATGGTTGGATCTTAGTGGTATGTATGGATTCTAAAATGATGGTTTGTTTCATTTCAGCTTGGCTTATAATATATGGTTTGGTTTTTGTTTCTTTTTTATGACATATTGGTTGTTTATTTATTTAATCCACTCGTTGAAGTTGATTTAGTGACTATATATTTCGAAGTAAGACATTATGCTGAGATAATATATTTTGGTGCTTGAGGAGTTCCAGGGATAAGTTCCGATGTTATTTGCTTATATTTTAGTAGAGAGCAGGAAAAGAGAGGATGTCAGCTGGTCGGAACACCCATTGGTGTTATAGATGCAGAAGGTCAGTACGTCTCCGTGGTAGAGATGCAGTTTGCCCCAACTGCAATGGAGGATTTATCCAAGAACTTGATGATATGGTGCCTGGAAATCCATTTGATTTCTTTGGTCTAGATCATGATGAAGATCGCGATCATGGTCTGGGTGCATTCTCTGCTTTTATGAGACAACGTTTAGCCGAAAGAAATGACATGAGGGGAAGATCAGAGTCACTTTTTGAGCATAGCCCGGGATTTGGTCCTCTATTAATATTTGGTGGTCAAATACCGTTGAGAAACAGCAGGTTAGAAGCTCTCTTCAATGGGGCTCCTGGCATTGGTATTACACGGGGCGATAGTGGTGACTACTTCATAGGCCCTGGACTGGAGGAGCTATTTGAACAGCTTTCAGAAAATGGTCATCGTGGCCCTCCACCAGCATCTAGATCATCAATCGATGCAATGCCAACAGTTAAGATCACGCAACGACATCTTCGCTCAGATTCACATTGTCCAGTTTGTAAAGAGAAATTTGAACTGGGGTCTGAAGCAAGGCAGATGGCTTGTAATCACATGTACCACTCAGATTGTATTGTTCCATGGCTAATCCAGCACAATTCTTGCCCTGTCTGCCGCCAGGAACTGCCACCACAAGGAATAGGAGGTGGGGGTGGGGGACATAGCACCAACGATCAAAACCGAAGCAACAGCTACAACAACGGGAGTGGCTCCCGGGTCAATCCAGGTAGACGCAATCCATTCTCTTATCTGTGGCCGTTTCGGTCATCTAGTTCTAACTCCAACCATGGCGGAGCAGGGAGCAGTGAACCGTCGAACCACCAAATGGGGTATTCAGGATATCGATACACTAGTTCACCATGAATTGAAGTTTGGAGATTGTTTGTTTGTAGTACAAAGGGTTGAAGATCAGCTTTGTTTGAAGAAGATACACAGGCTGTTGTATTTTTTGTGCAAATTTTCCTATGTAAATGACCTTATAATTATTTTGTAGCTGCTTATTGCTTCTGCTGATGTTTTCTCCATCTTCCATGTCAAAAAAATGACACATCAATTATTAGTATAAAATGGGAAAAATATTTTGCTGCATCTCGCTGAAGTGCTTTTATATATATGTATGTATAGAATTACATATATATATACATATATTATTTTTATTTATTATCAAACCAGAGATGTTGTAATAGTTGTCTTTGGATGGGGTTTCTTCTACCCTCGGCCTCTAGATGGTTGTTTTGTTTGGTTCAATTCTTTGTATGGTTTCTTGTTGTTTTGTTTGGTTCAATTATATGTGTGGTTCTTGGTGTAGAAAAAGAAGTGTAAATATTATTTTTGCTTAGCTATAGGTAATTAATAATATAAT

mRNA sequence

ATGTCAGCTGGTCGGAACACCCATTGGTGTTATAGATGCAGAAGGTCAGTACGTCTCCGTGGTAGAGATGCAGTTTGCCCCAACTGCAATGGAGGATTTATCCAAGAACTTGATGATATGGTGCCTGGAAATCCATTTGATTTCTTTGGTCTAGATCATGATGAAGATCGCGATCATGGTCTGGGTGCATTCTCTGCTTTTATGAGACAACGTTTAGCCGAAAGAAATGACATGAGGGGAAGATCAGAGTCACTTTTTGAGCATAGCCCGGGATTTGGTCCTCTATTAATATTTGGTGGTCAAATACCGTTGAGAAACAGCAGGTTAGAAGCTCTCTTCAATGGGGCTCCTGGCATTGGTATTACACGGGGCGATAGTGGTGACTACTTCATAGGCCCTGGACTGGAGGAGCTATTTGAACAGCTTTCAGAAAATGGTCATCGTGGCCCTCCACCAGCATCTAGATCATCAATCGATGCAATGCCAACAGTTAAGATCACGCAACGACATCTTCGCTCAGATTCACATTGTCCAGTTTGTAAAGAGAAATTTGAACTGGGGTCTGAAGCAAGGCAGATGGCTTGTAATCACATGTACCACTCAGATTGTATTGTTCCATGGCTAATCCAGCACAATTCTTGCCCTGTCTGCCGCCAGGAACTGCCACCACAAGGAATAGGAGGTGGGGGTGGGGGACATAGCACCAACGATCAAAACCGAAGCAACAGCTACAACAACGGGAGTGGCTCCCGGGTCAATCCAGGTAGACGCAATCCATTCTCTTATCTGTGGCCGTTTCGGTCATCTAGTTCTAACTCCAACCATGGCGGAGCAGGGAGCAGTGAACCGTCGAACCACCAAATGGGGTATTCAGGATATCGATACACTAGTTCACCATGA

Coding sequence (CDS)

ATGTCAGCTGGTCGGAACACCCATTGGTGTTATAGATGCAGAAGGTCAGTACGTCTCCGTGGTAGAGATGCAGTTTGCCCCAACTGCAATGGAGGATTTATCCAAGAACTTGATGATATGGTGCCTGGAAATCCATTTGATTTCTTTGGTCTAGATCATGATGAAGATCGCGATCATGGTCTGGGTGCATTCTCTGCTTTTATGAGACAACGTTTAGCCGAAAGAAATGACATGAGGGGAAGATCAGAGTCACTTTTTGAGCATAGCCCGGGATTTGGTCCTCTATTAATATTTGGTGGTCAAATACCGTTGAGAAACAGCAGGTTAGAAGCTCTCTTCAATGGGGCTCCTGGCATTGGTATTACACGGGGCGATAGTGGTGACTACTTCATAGGCCCTGGACTGGAGGAGCTATTTGAACAGCTTTCAGAAAATGGTCATCGTGGCCCTCCACCAGCATCTAGATCATCAATCGATGCAATGCCAACAGTTAAGATCACGCAACGACATCTTCGCTCAGATTCACATTGTCCAGTTTGTAAAGAGAAATTTGAACTGGGGTCTGAAGCAAGGCAGATGGCTTGTAATCACATGTACCACTCAGATTGTATTGTTCCATGGCTAATCCAGCACAATTCTTGCCCTGTCTGCCGCCAGGAACTGCCACCACAAGGAATAGGAGGTGGGGGTGGGGGACATAGCACCAACGATCAAAACCGAAGCAACAGCTACAACAACGGGAGTGGCTCCCGGGTCAATCCAGGTAGACGCAATCCATTCTCTTATCTGTGGCCGTTTCGGTCATCTAGTTCTAACTCCAACCATGGCGGAGCAGGGAGCAGTGAACCGTCGAACCACCAAATGGGGTATTCAGGATATCGATACACTAGTTCACCATGA

Protein sequence

MSAGRNTHWCYRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHGLGAFSAFMRQRLAERNDMRGRSESLFEHSPGFGPLLIFGGQIPLRNSRLEALFNGAPGIGITRGDSGDYFIGPGLEELFEQLSENGHRGPPPASRSSIDAMPTVKITQRHLRSDSHCPVCKEKFELGSEARQMACNHMYHSDCIVPWLIQHNSCPVCRQELPPQGIGGGGGGHSTNDQNRSNSYNNGSGSRVNPGRRNPFSYLWPFRSSSSNSNHGGAGSSEPSNHQMGYSGYRYTSSP

Homology

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BLAST of CsaV3_4G029180 vs. NCBI nr
Match: XP_004144313.1 (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis sativus] >XP_004144314.1 PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis sativus] >XP_011653844.1 PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis sativus] >XP_011653845.1 PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis sativus] >KGN54669.1 hypothetical protein Csa_4G419610 [Cucumis sativus])

HSP 1 Score: 585.9 bits (1509), Expect = 7.9e-164
Identity = 299/299 (100.00%), Postives = 299/299 (100.00%), Query Frame = 0


Query: 1   MSAGRNTHWCYRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG 60
           MSAGRNTHWCYRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG
Sbjct: 1   MSAGRNTHWCYRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG 60

Query: 61  LGAFSAFMRQRLAERNDMRGRSESLFEHSPGFGPLLIFGGQIPLRNSRLEALFNGAPGIG 120
           LGAFSAFMRQRLAERNDMRGRSESLFEHSPGFGPLLIFGGQIPLRNSRLEALFNGAPGIG
Sbjct: 61  LGAFSAFMRQRLAERNDMRGRSESLFEHSPGFGPLLIFGGQIPLRNSRLEALFNGAPGIG 120

Query: 121 ITRGDSGDYFIGPGLEELFEQLSENGHRGPPPASRSSIDAMPTVKITQRHLRSDSHCPVC 180
           ITRGDSGDYFIGPGLEELFEQLSENGHRGPPPASRSSIDAMPTVKITQRHLRSDSHCPVC
Sbjct: 121 ITRGDSGDYFIGPGLEELFEQLSENGHRGPPPASRSSIDAMPTVKITQRHLRSDSHCPVC 180

Query: 181 KEKFELGSEARQMACNHMYHSDCIVPWLIQHNSCPVCRQELPPQGIGXXXXXXXXXXXXX 240
           KEKFELGSEARQMACNHMYHSDCIVPWLIQHNSCPVCRQELPPQGIGXXXXXXXXXXXXX
Sbjct: 181 KEKFELGSEARQMACNHMYHSDCIVPWLIQHNSCPVCRQELPPQGIGXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXGSRVNPGRRNPFSYLWPFRSSSSNSNHGGAGSSEPSNHQMGYSGYRYTSSP 300
           XXXXXXXXGSRVNPGRRNPFSYLWPFRSSSSNSNHGGAGSSEPSNHQMGYSGYRYTSSP
Sbjct: 241 XXXXXXXXGSRVNPGRRNPFSYLWPFRSSSSNSNHGGAGSSEPSNHQMGYSGYRYTSSP 299

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BLAST of CsaV3_4G029180 vs. NCBI nr
Match: XP_008455755.1 (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo] >XP_008455756.1 PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo] >XP_008455757.1 PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo])

HSP 1 Score: 550.4 bits (1417), Expect = 3.7e-153
Identity = 284/299 (94.98%), Postives = 286/299 (95.65%), Query Frame = 0


Query: 1   MSAGRNTHWCYRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG 60
           MSAGRNTHWCYRCRRSVRL GRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG
Sbjct: 1   MSAGRNTHWCYRCRRSVRLCGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG 60

Query: 61  LGAFSAFMRQRLAERNDMRGRSESLFEHSPGFGPLLIFGGQIPLRNSRLEALFNGAPGIG 120
           LGAFSAFMRQRLAERNDMRGRSESLFEHSPGFGPLLIFGGQIPLRNSRLEALFNGAPGIG
Sbjct: 61  LGAFSAFMRQRLAERNDMRGRSESLFEHSPGFGPLLIFGGQIPLRNSRLEALFNGAPGIG 120

Query: 121 ITRGDSGDYFIGPGLEELFEQLSENGHRGPPPASRSSIDAMPTVKITQRHLRSDSHCPVC 180
           ITRGDSGDYFIGPGLEELFE+LS NGHRGPPPASRSSIDAMPTVKIT RHLRSDSHCPVC
Sbjct: 121 ITRGDSGDYFIGPGLEELFERLSANGHRGPPPASRSSIDAMPTVKITHRHLRSDSHCPVC 180

Query: 181 KEKFELGSEARQMACNHMYHSDCIVPWLIQHNSCPVCRQELPPQGIGXXXXXXXXXXXXX 240
           KEKFELGSEARQMACNHMYHSDCIVPWLIQHNSCPVCRQELP QGI XXXXXXXXXXXXX
Sbjct: 181 KEKFELGSEARQMACNHMYHSDCIVPWLIQHNSCPVCRQELPSQGIXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXGSRVNPGRRNPFSYLWPFRSSSSNSNHGGAGSSEPSNHQMGYSGYRYTSSP 300
           XXXXXXXX   VNPGRRNPFSYLWPFRSSS     GGAGSSEPSNHQMGYSGYRYT+SP
Sbjct: 241 XXXXXXXXXXXVNPGRRNPFSYLWPFRSSSXXXXXGGAGSSEPSNHQMGYSGYRYTNSP 299

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BLAST of CsaV3_4G029180 vs. NCBI nr
Match: XP_022924954.1 (probable E3 ubiquitin-protein ligase RHC1A [Cucurbita moschata] >XP_022924955.1 probable E3 ubiquitin-protein ligase RHC1A [Cucurbita moschata])

HSP 1 Score: 536.2 bits (1380), Expect = 7.2e-149
Identity = 267/292 (91.44%), Postives = 276/292 (94.52%), Query Frame = 0


Query: 1   MSAGRNTHWCYRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG 60
           MS+G+NTHWCYRCRRS+RL GRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG
Sbjct: 1   MSSGQNTHWCYRCRRSIRLCGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG 60

Query: 61  LGAFSAFMRQRLAERNDMRGRSESLFEHSPGFGPLLIFGGQIPLRNSRLEALFNGAPGIG 120
           LGAFSAFMRQRLAERNDMRGR+ESLFE +PGFGPLLIFGGQIPLRN RLEALFNGAPGIG
Sbjct: 61  LGAFSAFMRQRLAERNDMRGRAESLFERNPGFGPLLIFGGQIPLRNRRLEALFNGAPGIG 120

Query: 121 ITRGDSGDYFIGPGLEELFEQLSENGHRGPPPASRSSIDAMPTVKITQRHLRSDSHCPVC 180
           ITRGD GDYFIGPGLEELFEQLSENGHRGPPPASRS IDAMPTVKITQRHLRSDSHCPVC
Sbjct: 121 ITRGDGGDYFIGPGLEELFEQLSENGHRGPPPASRSLIDAMPTVKITQRHLRSDSHCPVC 180

Query: 181 KEKFELGSEARQMACNHMYHSDCIVPWLIQHNSCPVCRQELPPQGIGXXXXXXXXXXXXX 240
           KEKFELGSEARQMACNHMYHSDCIVPWL+QHNSCPVCRQELPPQ +G      XXXXXXX
Sbjct: 181 KEKFELGSEARQMACNHMYHSDCIVPWLVQHNSCPVCRQELPPQVMGGAGHNTXXXXXXX 240

Query: 241 XXXXXXXXGSRVNPGRRNPFSYLWPFRSSSSNSNHGGAGSSEPSNHQMGYSG 293
           XXXXXXXX  RVNPGRRNPFSYLWPFRSS+S+SNHGGAGSSE  NHQMGYSG
Sbjct: 241 XXXXXXXXXXRVNPGRRNPFSYLWPFRSSNSSSNHGGAGSSESRNHQMGYSG 292

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BLAST of CsaV3_4G029180 vs. NCBI nr
Match: XP_023517925.1 (probable E3 ubiquitin-protein ligase RHC1A [Cucurbita pepo subsp. pepo] >XP_023517926.1 probable E3 ubiquitin-protein ligase RHC1A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 535.0 bits (1377), Expect = 1.6e-148
Identity = 273/292 (93.49%), Postives = 281/292 (96.23%), Query Frame = 0


Query: 1   MSAGRNTHWCYRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG 60
           MS+G+NTHWCYRCRRS+RL GRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG
Sbjct: 1   MSSGQNTHWCYRCRRSIRLCGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG 60

Query: 61  LGAFSAFMRQRLAERNDMRGRSESLFEHSPGFGPLLIFGGQIPLRNSRLEALFNGAPGIG 120
           LGAFSAFMRQRLAERNDMRGRSESLFE +PGFGPLLIFGGQIPLRN RLEALFNGAPGIG
Sbjct: 61  LGAFSAFMRQRLAERNDMRGRSESLFERNPGFGPLLIFGGQIPLRNRRLEALFNGAPGIG 120

Query: 121 ITRGDSGDYFIGPGLEELFEQLSENGHRGPPPASRSSIDAMPTVKITQRHLRSDSHCPVC 180
           ITRGD GDYFIGPGLEELFEQLSENGHRGPPPASRS IDAMPTVKITQRHLRSDSHCPVC
Sbjct: 121 ITRGDGGDYFIGPGLEELFEQLSENGHRGPPPASRSLIDAMPTVKITQRHLRSDSHCPVC 180

Query: 181 KEKFELGSEARQMACNHMYHSDCIVPWLIQHNSCPVCRQELPPQGIGXXXXXXXXXXXXX 240
           KEKFELGSEARQMACNHMYHSDCIVPWL+QHNSCPVCRQELPPQ +GXXXXXXXXXXXXX
Sbjct: 181 KEKFELGSEARQMACNHMYHSDCIVPWLVQHNSCPVCRQELPPQVMGXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXGSRVNPGRRNPFSYLWPFRSSSSNSNHGGAGSSEPSNHQMGYSG 293
           XXXXXXXX  RVNPGRRNPFSYLWPFRSS+S+SNHGGAGSSE  NH MGYSG
Sbjct: 241 XXXXXXXXXXRVNPGRRNPFSYLWPFRSSNSSSNHGGAGSSESRNHPMGYSG 292

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BLAST of CsaV3_4G029180 vs. NCBI nr
Match: XP_022966412.1 (probable E3 ubiquitin-protein ligase RHC1A [Cucurbita maxima] >XP_022966413.1 probable E3 ubiquitin-protein ligase RHC1A [Cucurbita maxima])

HSP 1 Score: 528.9 bits (1361), Expect = 1.1e-146
Identity = 266/292 (91.10%), Postives = 275/292 (94.18%), Query Frame = 0


Query: 1   MSAGRNTHWCYRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG 60
           MS+G+NTHWCYRCRRS+RL GRDAVCPNCNGGFIQELDDMVPGNPFDFFGLD DEDRDHG
Sbjct: 1   MSSGQNTHWCYRCRRSIRLCGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDPDEDRDHG 60

Query: 61  LGAFSAFMRQRLAERNDMRGRSESLFEHSPGFGPLLIFGGQIPLRNSRLEALFNGAPGIG 120
           LGAFSAFMRQRLAERNDMRGRSESLFE +PGFGPLLIFGGQIPLRN RLEA FNGAPGIG
Sbjct: 61  LGAFSAFMRQRLAERNDMRGRSESLFERNPGFGPLLIFGGQIPLRNRRLEAFFNGAPGIG 120

Query: 121 ITRGDSGDYFIGPGLEELFEQLSENGHRGPPPASRSSIDAMPTVKITQRHLRSDSHCPVC 180
           ITRGDSGDY IGPGLEELFEQLSENGHRGPPPASRS IDAMPTVKITQRHLRSDSHCPVC
Sbjct: 121 ITRGDSGDYVIGPGLEELFEQLSENGHRGPPPASRSLIDAMPTVKITQRHLRSDSHCPVC 180

Query: 181 KEKFELGSEARQMACNHMYHSDCIVPWLIQHNSCPVCRQELPPQGIGXXXXXXXXXXXXX 240
           KEKFELGSEARQMACNHMYHSDCIVPWL+QHNSCPVCRQELPPQ +G     XXXXXXXX
Sbjct: 181 KEKFELGSEARQMACNHMYHSDCIVPWLVQHNSCPVCRQELPPQVMGGEGHNXXXXXXXX 240

Query: 241 XXXXXXXXGSRVNPGRRNPFSYLWPFRSSSSNSNHGGAGSSEPSNHQMGYSG 293
           XXXXXXXX  RVNPGRRNPFSYLWPFRSS+S+SNHGGAGSSE  +HQMGYSG
Sbjct: 241 XXXXXXXXXXRVNPGRRNPFSYLWPFRSSNSSSNHGGAGSSESRDHQMGYSG 292

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BLAST of CsaV3_4G029180 vs. TAIR10
Match: AT2G40830.2 (RING-H2 finger C1A)

HSP 1 Score: 299.3 bits (765), Expect = 2.7e-81
Identity = 151/236 (63.98%), Postives = 184/236 (77.97%), Query Frame = 0


Query: 1   MSAGRNTHWCYRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFF----GLDHDED 60
           MS+ RNTHWC+RC+R+VRL G++ VC  C GGF++EL DM   +PFD F    G+   + 
Sbjct: 1   MSSSRNTHWCHRCQRAVRLHGQEPVCFYCGGGFVEEL-DMAQASPFDMFRSHRGVVERDQ 60

Query: 61  RDHGLGAFSAFMRQRLAERN---DMRGRS-ESLFEHSPGFGPLLIFGGQIPLR---NSRL 120
               + AFS FMR RLAER+   ++RGR+  S  E+ PG  PLLIFGGQ+P R   ++ +
Sbjct: 61  TFDLMDAFSVFMRNRLAERSHDREIRGRTISSGPENFPGLAPLLIFGGQVPYRLTGDNAV 120

Query: 121 EALFN-GAPGIGITRGDSGDYFIGPGLEELFEQLSE-NGHRGPPPASRSSIDAMPTVKIT 180
           EALFN G+PGIGITRG++GDYF GPGLEELFEQLS     RGPPPA RS+IDA+PT+KI 
Sbjct: 121 EALFNGGSPGIGITRGNTGDYFFGPGLEELFEQLSAGTTRRGPPPAPRSAIDALPTIKIA 180

Query: 181 QRHLR-SDSHCPVCKEKFELGSEARQMACNHMYHSDCIVPWLIQHNSCPVCRQELP 223
           QRHLR SDS+CPVCK++FELGSEA+QM CNH+YHSDCIVPWL+QHNSCPVCRQELP
Sbjct: 181 QRHLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 235

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BLAST of CsaV3_4G029180 vs. TAIR10
Match: AT3G56580.2 (RING/U-box superfamily protein)

HSP 1 Score: 285.4 bits (729), Expect = 4.0e-77
Identity = 165/284 (58.10%), Postives = 194/284 (68.31%), Query Frame = 0


Query: 1   MSAGRNTHWCYRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG 60
           MS+ RNTHWC+RC+R+V LR RDAVC  C GGF++E+ D+ P           D +RD  
Sbjct: 1   MSSIRNTHWCHRCQRAVWLRARDAVCSYCGGGFVEEI-DIGPSR------AHRDVERDPT 60

Query: 61  ---LGAFSAFMRQRLAERN---DMRGRSESLFEHS-PGFGPLLIFGGQIPLR-----NSR 120
              + AFSAFMR RLAER+   ++ GR  S    S     PLLIFGGQ P R     NS 
Sbjct: 61  FDLMEAFSAFMRSRLAERSYDREISGRLGSAGSESFSNLAPLLIFGGQAPFRLAGGDNSS 120

Query: 121 LEALFNG-APGIGITRG-DSGDYFIGPGLEELFEQLSE-NGHRGPPPASRSSIDAMPTVK 180
           +EA  NG APGIGI RG ++GDYF GPGLEEL EQLS    HRGPPPA +SSIDA+PT+K
Sbjct: 121 VEAFVNGAAPGIGIARGTNAGDYFFGPGLEELIEQLSSGTHHRGPPPAPKSSIDALPTIK 180

Query: 181 ITQRHLR-SDSHCPVCKEKFELGSEARQMACNHMYHSDCIVPWLIQHNSCPVCRQELPPQ 240
           ITQ+HL+ SDSHCPVCK++FEL SEA+QM C+H+YHSDCIVPWL+QHNSCPVCR+ELP +
Sbjct: 181 ITQKHLKSSDSHCPVCKDEFELKSEAKQMPCHHIYHSDCIVPWLVQHNSCPVCRKELPSR 240

Query: 241 GIGXXXXXXXXXXXXXXXXXXXXXGSRVNPGRRNPFSYLWPFRS 269
           G                 XXXXXX  R N  RRN FS LWPFRS
Sbjct: 241 G----------SSSSTQSXXXXXXXGRENSRRRNIFSNLWPFRS 267

[Close]

BLAST of CsaV3_4G029180 vs. TAIR10
Match: AT3G10815.1 (RING/U-box superfamily protein)

HSP 1 Score: 164.1 bits (414), Expect = 1.3e-40
Identity = 94/277 (33.94%), Postives = 133/277 (48.01%), Query Frame = 0


Query: 5   RNTHWCYRCRRSVRLRG---RDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHGL 64
           +NTHWC+ CRR + L+G   R+  C  C   F++ L + V  +PFD FGL ++E R+   
Sbjct: 7   KNTHWCHTCRRGIHLQGEGRREGACIYCGNTFLERLYENVELSPFDLFGLAYEEARN--- 66

Query: 65  GAFSAFMRQRLAERNDMRGRSESLFEHSPGFGPLLIFGGQIPLRNSRLEALFNGAPGIGI 124
                        RN+ R                 + G Q+       E LFN  P +  
Sbjct: 67  ------------RRNNRRS----------------VIGEQL-----SFEELFNRLPAL-- 126

Query: 125 TRGDSGDYFIGPGLEELFEQLSENGHRGPPPASRSSIDAMPTVKITQRHLRSDSHCPVCK 184
                                     RGPPPAS ++I+++  +KI Q+HL  D +CPVC+
Sbjct: 127 -----------------------QDRRGPPPASLAAINSLQKIKIRQKHLGLDPYCPVCQ 186

Query: 185 EKFELGSEARQMACNHMYHSDCIVPWLIQHNSCPVCRQELPPQGIGXXXXXXXXXXXXXX 244
           ++FE+GS+AR+M C H+YHS+CI+PWL+Q N+CPVCR+ELP                   
Sbjct: 187 DQFEIGSDARKMPCKHIYHSECILPWLVQRNTCPVCRKELPQDR---------------- 195

Query: 245 XXXXXXXGSRVNPGRRNPFSYLWPFRSSSSNSNHGGA 279
                      N  R+NP  +LWPFRSS   SNH G+
Sbjct: 247 -----------NNSRKNPLWHLWPFRSSGLASNHNGS 195

[Close]

BLAST of CsaV3_4G029180 vs. TAIR10
Match: AT3G19950.1 (RING/U-box superfamily protein)

HSP 1 Score: 147.1 bits (370), Expect = 1.7e-35
Identity = 89/245 (36.33%), Postives = 123/245 (50.20%), Query Frame = 0


Query: 9   WCYRCRRSVRL---RGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDE---------- 68
           +CY+C ++V +      D  CP CN GF++E +D  P    +F     D           
Sbjct: 22  FCYQCNQTVTISISSSADPFCPICNQGFLEEYEDPNPNQSLNFNPNSSDSFFPMADPFST 81

Query: 69  ----------DRDHGLGAFSAFMRQRLAERNDMRGRSESLFEHSPGFGPLLIFGGQI-PL 128
                         G+   S F           + RS      S  F P       +  L
Sbjct: 82  LLPLIFGSSAAAPSGMDFMSLF-----GPSMQPQARSTQQNPQSDAFDPFTFLQNHLQTL 141

Query: 129 RNS--RLEALFNGAPGIGITR--GDSGDYFIGPGLEELFEQLSEN--GHRGPPPASRSSI 188
           R+S    E +    P     R  G+ GDYF GPGLE+L +QL+EN     G PPAS+S+I
Sbjct: 142 RSSGTHFEFVIENHPSDPGNRMPGNFGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAI 201

Query: 189 DAMPTVKITQRHLRSD-SHCPVCKEKFELGSEARQMACNHMYHSDCIVPWLIQHNSCPVC 223
           DA+PTVK+T+  L+S+ + C VC ++FE GS+ +QM C H++H DC++PWL  HNSCPVC
Sbjct: 202 DALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVC 261

[Close]

BLAST of CsaV3_4G029180 vs. TAIR10
Match: AT1G60360.1 (RING/U-box superfamily protein)

HSP 1 Score: 130.2 bits (326), Expect = 2.2e-30
Identity = 82/246 (33.33%), Postives = 117/246 (47.56%), Query Frame = 0


Query: 8   HWCYRCRRSVRLRG---RDAVCPNCNGGFIQELDD-MVPGNPFDFFGLDHDEDRDHGL-- 67
           +WCY C R VR+      +  CP C   F+ E++    P   F+      D   +  L  
Sbjct: 24  YWCYHCDRMVRIASSNPSEIACPRCLRQFVVEIETRQRPRFTFNHATPPFDASPEARLLE 83

Query: 68  -----------GAFSAFMRQRLAERNDMRGRSESLFEHSPGFGPLLIFGGQIPLRNSRLE 127
                      G F A    R   RN +   S    +H        +  G +PL      
Sbjct: 84  ALSLMFEPATIGRFGADPFLRARSRNILEPESRPRPQHRRRHSLDNVNNGGLPLPRRTYV 143

Query: 128 ALFNGAPGIGI------------TRGDSGDYFIG-PGLEELFEQLSENGHRGPPPASRSS 187
            L    P   +               +S DYF G   LE+L EQL+++   GPPPAS  +
Sbjct: 144 ILRPNNPTSPLGNIIAPPNQAPPRHVNSHDYFTGASSLEQLIEQLTQDDRPGPPPASEPT 203

Query: 188 IDAMPTVKITQRHLRSD-SHCPVCKEKFELGSEARQMACNHMYHSDCIVPWLIQHNSCPV 223
           I+++P+VKIT +HL +D S C VC E+F +G +A ++ C H+YH DCIVPWL  +NSCP+
Sbjct: 204 INSLPSVKITPQHLTNDMSQCTVCMEEFIVGGDATELPCKHIYHKDCIVPWLRLNNSCPI 263

[Close]

BLAST of CsaV3_4G029180 vs. Swiss-Prot
Match: sp|O22197|RHC1A_ARATH (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 4.8e-80
Identity = 151/236 (63.98%), Postives = 184/236 (77.97%), Query Frame = 0


Query: 1   MSAGRNTHWCYRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFF----GLDHDED 60
           MS+ RNTHWC+RC+R+VRL G++ VC  C GGF++EL DM   +PFD F    G+   + 
Sbjct: 1   MSSSRNTHWCHRCQRAVRLHGQEPVCFYCGGGFVEEL-DMAQASPFDMFRSHRGVVERDQ 60

Query: 61  RDHGLGAFSAFMRQRLAERN---DMRGRS-ESLFEHSPGFGPLLIFGGQIPLR---NSRL 120
               + AFS FMR RLAER+   ++RGR+  S  E+ PG  PLLIFGGQ+P R   ++ +
Sbjct: 61  TFDLMDAFSVFMRNRLAERSHDREIRGRTISSGPENFPGLAPLLIFGGQVPYRLTGDNAV 120

Query: 121 EALFN-GAPGIGITRGDSGDYFIGPGLEELFEQLSE-NGHRGPPPASRSSIDAMPTVKIT 180
           EALFN G+PGIGITRG++GDYF GPGLEELFEQLS     RGPPPA RS+IDA+PT+KI 
Sbjct: 121 EALFNGGSPGIGITRGNTGDYFFGPGLEELFEQLSAGTTRRGPPPAPRSAIDALPTIKIA 180

Query: 181 QRHLR-SDSHCPVCKEKFELGSEARQMACNHMYHSDCIVPWLIQHNSCPVCRQELP 223
           QRHLR SDS+CPVCK++FELGSEA+QM CNH+YHSDCIVPWL+QHNSCPVCRQELP
Sbjct: 181 QRHLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 235

[Close]

BLAST of CsaV3_4G029180 vs. Swiss-Prot
Match: sp|Q94AK4|RZF1_ARATH (E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 7.2e-76
Identity = 165/284 (58.10%), Postives = 194/284 (68.31%), Query Frame = 0


Query: 1   MSAGRNTHWCYRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG 60
           MS+ RNTHWC+RC+R+V LR RDAVC  C GGF++E+ D+ P           D +RD  
Sbjct: 1   MSSIRNTHWCHRCQRAVWLRARDAVCSYCGGGFVEEI-DIGPSR------AHRDVERDPT 60

Query: 61  ---LGAFSAFMRQRLAERN---DMRGRSESLFEHS-PGFGPLLIFGGQIPLR-----NSR 120
              + AFSAFMR RLAER+   ++ GR  S    S     PLLIFGGQ P R     NS 
Sbjct: 61  FDLMEAFSAFMRSRLAERSYDREISGRLGSAGSESFSNLAPLLIFGGQAPFRLAGGDNSS 120

Query: 121 LEALFNG-APGIGITRG-DSGDYFIGPGLEELFEQLSE-NGHRGPPPASRSSIDAMPTVK 180
           +EA  NG APGIGI RG ++GDYF GPGLEEL EQLS    HRGPPPA +SSIDA+PT+K
Sbjct: 121 VEAFVNGAAPGIGIARGTNAGDYFFGPGLEELIEQLSSGTHHRGPPPAPKSSIDALPTIK 180

Query: 181 ITQRHLR-SDSHCPVCKEKFELGSEARQMACNHMYHSDCIVPWLIQHNSCPVCRQELPPQ 240
           ITQ+HL+ SDSHCPVCK++FEL SEA+QM C+H+YHSDCIVPWL+QHNSCPVCR+ELP +
Sbjct: 181 ITQKHLKSSDSHCPVCKDEFELKSEAKQMPCHHIYHSDCIVPWLVQHNSCPVCRKELPSR 240

Query: 241 GIGXXXXXXXXXXXXXXXXXXXXXGSRVNPGRRNPFSYLWPFRS 269
           G                 XXXXXX  R N  RRN FS LWPFRS
Sbjct: 241 G----------SSSSTQSXXXXXXXGRENSRRRNIFSNLWPFRS 267

[Close]

BLAST of CsaV3_4G029180 vs. Swiss-Prot
Match: sp|Q8LPN7|RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.1e-34
Identity = 89/245 (36.33%), Postives = 123/245 (50.20%), Query Frame = 0


Query: 9   WCYRCRRSVRL---RGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDE---------- 68
           +CY+C ++V +      D  CP CN GF++E +D  P    +F     D           
Sbjct: 22  FCYQCNQTVTISISSSADPFCPICNQGFLEEYEDPNPNQSLNFNPNSSDSFFPMADPFST 81

Query: 69  ----------DRDHGLGAFSAFMRQRLAERNDMRGRSESLFEHSPGFGPLLIFGGQI-PL 128
                         G+   S F           + RS      S  F P       +  L
Sbjct: 82  LLPLIFGSSAAAPSGMDFMSLF-----GPSMQPQARSTQQNPQSDAFDPFTFLQNHLQTL 141

Query: 129 RNS--RLEALFNGAPGIGITR--GDSGDYFIGPGLEELFEQLSEN--GHRGPPPASRSSI 188
           R+S    E +    P     R  G+ GDYF GPGLE+L +QL+EN     G PPAS+S+I
Sbjct: 142 RSSGTHFEFVIENHPSDPGNRMPGNFGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAI 201

Query: 189 DAMPTVKITQRHLRSD-SHCPVCKEKFELGSEARQMACNHMYHSDCIVPWLIQHNSCPVC 223
           DA+PTVK+T+  L+S+ + C VC ++FE GS+ +QM C H++H DC++PWL  HNSCPVC
Sbjct: 202 DALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVC 261

[Close]

BLAST of CsaV3_4G029180 vs. Swiss-Prot
Match: sp|P0CH30|RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.4e-33
Identity = 88/246 (35.77%), Postives = 125/246 (50.81%), Query Frame = 0


Query: 9   WCYRCRRSVRLR----GRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHGL--- 68
           +CY+C R+V +       D  CP CN GF++E D+  P     F   + +    H L   
Sbjct: 24  FCYQCNRTVNVTISPPSSDPTCPICNEGFLEEYDNPNPNQGSGFLNPNPNSIPFHDLFLT 83

Query: 69  --GAFSAFMRQRL---------------AERNDMRGRSESLFEHSPGFGPLLIFGGQI-P 128
               F++ +                        + G + S       F P       +  
Sbjct: 84  LSDPFASLLPLLFPSXXXXXXXXXXXIDPNNPSLSGPTRSGRGDPFAFDPFTFIQNHLND 143

Query: 129 LRNS--RLEALFNGAPGIGITR--GDSGDYFIGPGLEELFEQLSEN--GHRGPPPASRSS 188
           LR+S  ++E +    P     R   + GDYFIGPGLE+L +QL+EN     G PPAS+S+
Sbjct: 144 LRSSGAQIEFVIQNNPSDQGFRLPANIGDYFIGPGLEQLIQQLAENDPNRYGTPPASKSA 203

Query: 189 IDAMPTVKITQRHLRSD-SHCPVCKEKFELGSEARQMACNHMYHSDCIVPWLIQHNSCPV 223
           I+A+P V IT+ +L S+ + C VC + FE G+EA+QM C H+YH DC++PWL  HNSCPV
Sbjct: 204 IEALPLVNITKSNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPV 263

[Close]

BLAST of CsaV3_4G029180 vs. Swiss-Prot
Match: sp|Q6AVN2|SIRP1_ORYSJ (E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 9.6e-28
Identity = 84/244 (34.43%), Postives = 126/244 (51.64%), Query Frame = 0


Query: 8   HWCYRCRRSVRLRGRDAV-CPNCNGGFIQELDD----------MVPG----NPFDFFGLD 67
           +WC+ C +++     D + CP+C GGF++E+ D            PG    NP +  G  
Sbjct: 9   YWCHECEQAIEEAMVDEIKCPSCGGGFVEEMTDEEIERLTNRQPEPGFSQWNPIEHPGET 68

Query: 68  HD-EDRDHGLG-AFSAFMRQ-RLAE--RNDMRGRSESLFEHSPGFGPLLI--FGGQIPLR 127
            D +D D+ LG  F  F+R+ R A   R  +    + L +       +LI  F   + L+
Sbjct: 69  MDSDDEDNDLGREFEGFIRRHRRASTLRRVLDSIHDDLADDQERDSSILINAFNQALALQ 128

Query: 128 NSRLEALFNGAPGIGITRGDSG---DYFIGPGLEELFEQLSEN--GHRGPPPASRSSIDA 187
            S L+    G    G +  D G   +Y +G GL  L + L+E+     G PPA + +++A
Sbjct: 129 GSVLDP-DEGQGDQGGSTNDDGLLEEYVLGAGLSLLLQHLAESDPSRNGTPPAKKEAVEA 188

Query: 188 MPTVKITQRHLRSDSHCPVCKEKFELGSEARQMACNHMYHSDCIVPWLIQHNSCPVCRQE 225
           +PTVKI +        C VC +  E+GS+A+QM C H +HS CI+PWL  H+SCPVCR E
Sbjct: 189 LPTVKIEE-----VVSCSVCLDDLEVGSQAKQMPCEHKFHSSCILPWLELHSSCPVCRFE 246

[Close]

BLAST of CsaV3_4G029180 vs. TrEMBL
Match: tr|A0A0A0L0T9|A0A0A0L0T9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G419610 PE=4 SV=1)

HSP 1 Score: 585.9 bits (1509), Expect = 5.2e-164
Identity = 299/299 (100.00%), Postives = 299/299 (100.00%), Query Frame = 0


Query: 1   MSAGRNTHWCYRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG 60
           MSAGRNTHWCYRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG
Sbjct: 1   MSAGRNTHWCYRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG 60

Query: 61  LGAFSAFMRQRLAERNDMRGRSESLFEHSPGFGPLLIFGGQIPLRNSRLEALFNGAPGIG 120
           LGAFSAFMRQRLAERNDMRGRSESLFEHSPGFGPLLIFGGQIPLRNSRLEALFNGAPGIG
Sbjct: 61  LGAFSAFMRQRLAERNDMRGRSESLFEHSPGFGPLLIFGGQIPLRNSRLEALFNGAPGIG 120

Query: 121 ITRGDSGDYFIGPGLEELFEQLSENGHRGPPPASRSSIDAMPTVKITQRHLRSDSHCPVC 180
           ITRGDSGDYFIGPGLEELFEQLSENGHRGPPPASRSSIDAMPTVKITQRHLRSDSHCPVC
Sbjct: 121 ITRGDSGDYFIGPGLEELFEQLSENGHRGPPPASRSSIDAMPTVKITQRHLRSDSHCPVC 180

Query: 181 KEKFELGSEARQMACNHMYHSDCIVPWLIQHNSCPVCRQELPPQGIGXXXXXXXXXXXXX 240
           KEKFELGSEARQMACNHMYHSDCIVPWLIQHNSCPVCRQELPPQGIGXXXXXXXXXXXXX
Sbjct: 181 KEKFELGSEARQMACNHMYHSDCIVPWLIQHNSCPVCRQELPPQGIGXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXGSRVNPGRRNPFSYLWPFRSSSSNSNHGGAGSSEPSNHQMGYSGYRYTSSP 300
           XXXXXXXXGSRVNPGRRNPFSYLWPFRSSSSNSNHGGAGSSEPSNHQMGYSGYRYTSSP
Sbjct: 241 XXXXXXXXGSRVNPGRRNPFSYLWPFRSSSSNSNHGGAGSSEPSNHQMGYSGYRYTSSP 299

[Close]

BLAST of CsaV3_4G029180 vs. TrEMBL
Match: tr|A0A1S3C178|A0A1S3C178_CUCME (E3 ubiquitin-protein ligase RING1-like OS=Cucumis melo OX=3656 GN=LOC103495857 PE=4 SV=1)

HSP 1 Score: 550.4 bits (1417), Expect = 2.4e-153
Identity = 284/299 (94.98%), Postives = 286/299 (95.65%), Query Frame = 0


Query: 1   MSAGRNTHWCYRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG 60
           MSAGRNTHWCYRCRRSVRL GRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG
Sbjct: 1   MSAGRNTHWCYRCRRSVRLCGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG 60

Query: 61  LGAFSAFMRQRLAERNDMRGRSESLFEHSPGFGPLLIFGGQIPLRNSRLEALFNGAPGIG 120
           LGAFSAFMRQRLAERNDMRGRSESLFEHSPGFGPLLIFGGQIPLRNSRLEALFNGAPGIG
Sbjct: 61  LGAFSAFMRQRLAERNDMRGRSESLFEHSPGFGPLLIFGGQIPLRNSRLEALFNGAPGIG 120

Query: 121 ITRGDSGDYFIGPGLEELFEQLSENGHRGPPPASRSSIDAMPTVKITQRHLRSDSHCPVC 180
           ITRGDSGDYFIGPGLEELFE+LS NGHRGPPPASRSSIDAMPTVKIT RHLRSDSHCPVC
Sbjct: 121 ITRGDSGDYFIGPGLEELFERLSANGHRGPPPASRSSIDAMPTVKITHRHLRSDSHCPVC 180

Query: 181 KEKFELGSEARQMACNHMYHSDCIVPWLIQHNSCPVCRQELPPQGIGXXXXXXXXXXXXX 240
           KEKFELGSEARQMACNHMYHSDCIVPWLIQHNSCPVCRQELP QGI XXXXXXXXXXXXX
Sbjct: 181 KEKFELGSEARQMACNHMYHSDCIVPWLIQHNSCPVCRQELPSQGIXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXGSRVNPGRRNPFSYLWPFRSSSSNSNHGGAGSSEPSNHQMGYSGYRYTSSP 300
           XXXXXXXX   VNPGRRNPFSYLWPFRSSS     GGAGSSEPSNHQMGYSGYRYT+SP
Sbjct: 241 XXXXXXXXXXXVNPGRRNPFSYLWPFRSSSXXXXXGGAGSSEPSNHQMGYSGYRYTNSP 299

[Close]

BLAST of CsaV3_4G029180 vs. TrEMBL
Match: tr|A0A2N9I8M8|A0A2N9I8M8_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38476 PE=4 SV=1)

HSP 1 Score: 431.8 bits (1109), Expect = 1.3e-117
Identity = 230/310 (74.19%), Postives = 257/310 (82.90%), Query Frame = 0


Query: 1   MSAGRNTHWCYRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG 60
           MS+GRNTHWCY C R VRLRGRDA CP+CNGGF+QELDDM+  +PFD FGLD DEDRD  
Sbjct: 1   MSSGRNTHWCYNCSRPVRLRGRDAACPSCNGGFVQELDDMMRASPFDLFGLDIDEDRDRR 60

Query: 61  ---LGAFSAFMRQRLAER---NDMRGRSESLFEHSPGFGPLLIFGGQIPLR---NSRLEA 120
              + AFSAFM QRLA+R   +D+R RS+++ EH+PGFGPLLIFGGQIP+R   N   EA
Sbjct: 61  SRVMEAFSAFMGQRLADRSRSHDIRARSDAVPEHTPGFGPLLIFGGQIPIRLSGNGGFEA 120

Query: 121 LFNGAPGIGITRGDSGDYFIGPGLEELFEQLSENGHRGPPPASRSSIDAMPTVKITQRHL 180
           LFNG PGIG+TRG++GDYFIGPGLEELFEQLS N  RGPPPA+RSSIDAMPT+KITQRHL
Sbjct: 121 LFNGTPGIGLTRGNAGDYFIGPGLEELFEQLSANDRRGPPPAARSSIDAMPTIKITQRHL 180

Query: 181 RSDSHCPVCKEKFELGSEARQMACNHMYHSDCIVPWLIQHNSCPVCRQELPPQGI-GXXX 240
           RSDSHCPVCKEKFELGSEARQMACNHMYHSDCIVPWL+QHNSCPVCRQELPPQG+     
Sbjct: 181 RSDSHCPVCKEKFELGSEARQMACNHMYHSDCIVPWLVQHNSCPVCRQELPPQGLSNGRS 240

Query: 241 XXXXXXXXXXXXXXXXXXGSRVNPGRRNPFSYLWPFRSSSSNSNH-GGAGSSEPS----N 296
            XXXXXXXXXXXXXXX   SR + GRRNPFS  WPFRSS+S+SNH G AGSS  +    N
Sbjct: 241 SXXXXXXXXXXXXXXXRENSRESQGRRNPFSNFWPFRSSTSSSNHNGNAGSSSQTIHEQN 300

[Close]

BLAST of CsaV3_4G029180 vs. TrEMBL
Match: tr|B9HDT7|B9HDT7_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G032100v3 PE=4 SV=2)

HSP 1 Score: 417.5 bits (1072), Expect = 2.5e-113
Identity = 207/309 (66.99%), Postives = 236/309 (76.38%), Query Frame = 0


Query: 1   MSAGRNTHWCYRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG 60
           MS+ RNTHWCY CRR VRLRGRDA CP C+GGF+QELDDM   NP DFFG+D D+D D+ 
Sbjct: 1   MSSSRNTHWCYSCRRPVRLRGRDAACPYCSGGFVQELDDMHRINPLDFFGMDGDDDHDNM 60

Query: 61  LG---AFSAFMRQRLAER---NDMRGRSESLFEHSPGFGPLLIFGGQIPLR---NSRLEA 120
            G   AFSAFMRQR+A+R   +D+R RS+S+ EH+PGFGPLLIFGGQIP R   N  LEA
Sbjct: 61  FGLMEAFSAFMRQRMADRSHNHDIRSRSDSIPEHNPGFGPLLIFGGQIPFRLSGNGGLEA 120

Query: 121 LFNGAPGIGITRGDSGDYFIGPGLEELFEQLSENGHRGPPPASRSSIDAMPTVKITQRHL 180
           LF+G+PG+   RG++GDYF+GPGLEELFEQLS N  RGP PA+RSSIDAMPTVKITQRHL
Sbjct: 121 LFSGSPGVAFARGNAGDYFVGPGLEELFEQLSANDRRGPAPATRSSIDAMPTVKITQRHL 180

Query: 181 RSDSHCPVCKEKFELGSEARQMACNHMYHSDCIVPWLIQHNSCPVCRQELPPQGIGXXXX 240
           R+DSHCPVCK+KFELGSEARQM CNH+YHSDCIVPWL+QHNSCPVCRQELPPQG      
Sbjct: 181 RTDSHCPVCKDKFELGSEARQMPCNHLYHSDCIVPWLVQHNSCPVCRQELPPQGSNSGHS 240

Query: 241 XXXXXXXXXXXXXXXXXGSRVNPGRRNPFSYLWPFRSSSSNSNHGGA-GSSEP----SNH 296
                             SR   GRRNP SYLWPFRSS+S+SNH    GSS P    +NH
Sbjct: 241 YQSSSSRSRNSNYSGRENSR--EGRRNPLSYLWPFRSSNSSSNHDETPGSSSPTMHENNH 300

[Close]

BLAST of CsaV3_4G029180 vs. TrEMBL
Match: tr|V4SSL7|V4SSL7_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10012279mg PE=4 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 3.6e-112
Identity = 206/308 (66.88%), Postives = 235/308 (76.30%), Query Frame = 0


Query: 1   MSAGRNTHWCYRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG 60
           MS+GRNTHWCYRCRR VRL+G DAVC  C+GGF+QELDDMV  +P DFFGLD+DE+RD  
Sbjct: 1   MSSGRNTHWCYRCRRPVRLQGEDAVCLYCSGGFVQELDDMVSVSPLDFFGLDNDEERDQR 60

Query: 61  LG---AFSAFMRQRLAER--NDMRGRSESLFEHSPGFGPLLIFGGQIPLR---NSRLEAL 120
           LG   AFSAFMR R+A+R  +D+RGR +S  EH  GFGPLLIFGGQIPLR   NS  EA+
Sbjct: 61  LGLMEAFSAFMRHRMADRHSHDIRGRYDSTPEHGQGFGPLLIFGGQIPLRLSGNSGFEAI 120

Query: 121 FNGAPGIGITRGDSGDYFIGPGLEELFEQLSENGHRGPPPASRSSIDAMPTVKITQRHLR 180
           F GAPG+G  RG++GDYFIGPGLEELFEQLS NG RGPPPA+RS+IDAMPTV+ITQRHLR
Sbjct: 121 FGGAPGLGFARGNTGDYFIGPGLEELFEQLSANGRRGPPPAARSAIDAMPTVRITQRHLR 180

Query: 181 SDSHCPVCKEKFELGSEARQMACNHMYHSDCIVPWLIQHNSCPVCRQELPPQGIGXXXXX 240
           SDSHCPVC++KFELGSEARQM CNH+YHSDCIVPWL+QHNSCPVCRQELP QG       
Sbjct: 181 SDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPLQGSSSSRIH 240

Query: 241 XXXXXXXXXXXXXXXXGSRVNPGRRNPFSYLWPFRSSSSNSNHGG-AGSSEPSNHQ---- 296
                             R N GRRN FS  WPFRSS+S+SNH G   SS P+ H+    
Sbjct: 241 QSSSGQSRSTSFGSNGSGRENQGRRNLFSGFWPFRSSNSSSNHNGTTESSSPAMHENNPH 300

The following BLAST results are available for this feature:

BLAST of CsaV3_4G029180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144313.1	7.9e-164	100.00	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis sativus] >XP_00414431...	[more]
XP_008455755.1	3.7e-153	94.98	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo] >XP_008455756.1...	[more]
XP_022924954.1	7.2e-149	91.44	probable E3 ubiquitin-protein ligase RHC1A [Cucurbita moschata] >XP_022924955.1 ...	[more]
XP_023517925.1	1.6e-148	93.49	probable E3 ubiquitin-protein ligase RHC1A [Cucurbita pepo subsp. pepo] >XP_0235...	[more]
XP_022966412.1	1.1e-146	91.10	probable E3 ubiquitin-protein ligase RHC1A [Cucurbita maxima] >XP_022966413.1 pr...	[more]

BLAST of CsaV3_4G029180 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G40830.2	2.7e-81	63.98	RING-H2 finger C1A	[more]
AT3G56580.2	4.0e-77	58.10	RING/U-box superfamily protein	[more]
AT3G10815.1	1.3e-40	33.94	RING/U-box superfamily protein	[more]
AT3G19950.1	1.7e-35	36.33	RING/U-box superfamily protein	[more]
AT1G60360.1	2.2e-30	33.33	RING/U-box superfamily protein	[more]

BLAST of CsaV3_4G029180 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O22197\|RHC1A_ARATH	4.8e-80	63.98	Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]
sp\|Q94AK4\|RZF1_ARATH	7.2e-76	58.10	E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV...	[more]
sp\|Q8LPN7\|RNG1L_ARATH	3.1e-34	36.33	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
sp\|P0CH30\|RING1_GOSHI	4.4e-33	35.77	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV...	[more]
sp\|Q6AVN2\|SIRP1_ORYSJ	9.6e-28	34.43	E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SI...	[more]

BLAST of CsaV3_4G029180 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L0T9\|A0A0A0L0T9_CUCSA	5.2e-164	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G419610 PE=4 SV=1	[more]
tr\|A0A1S3C178\|A0A1S3C178_CUCME	2.4e-153	94.98	E3 ubiquitin-protein ligase RING1-like OS=Cucumis melo OX=3656 GN=LOC103495857 P...	[more]
tr\|A0A2N9I8M8\|A0A2N9I8M8_FAGSY	1.3e-117	74.19	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38476 PE=4 SV=1	[more]
tr\|B9HDT7\|B9HDT7_POPTR	2.5e-113	66.99	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G032100v3 PE=...	[more]
tr\|V4SSL7\|V4SSL7_9ROSI	3.6e-112	66.88	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10012279mg PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process	GO:0000209	protein polyubiquitination
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0061630	ubiquitin protein ligase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G029180.1	CsaV3_4G029180.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 177..217 e-value: 1.4E-6 score: 37.9
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 176..218 e-value: 1.8E-10 score: 40.8
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 177..218 score: 11.914
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 140..224 e-value: 2.5E-20 score: 73.9
None	No IPR available	PFAM	PF14369	zinc_ribbon_9	coord: 6..37 e-value: 2.7E-12 score: 46.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 231..255
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 263..299
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 225..299
None	No IPR available	PANTHER	PTHR44290	FAMILY NOT NAMED	coord: 1..294
None	No IPR available	PANTHER	PTHR44290:SF1	E3 UBIQUITIN LIGASE-RELATED	coord: 1..294
None	No IPR available	CDD	cd16667	RING-H2_RNF126_like	coord: 177..218 e-value: 4.27498E-23 score: 88.914
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 157..224

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G029180	CSPI04G18810	Wild cucumber (PI 183967)	cpicucB212
CsaV3_4G029180	Cucsa.358650	Cucumber (Gy14) v1	cgycucB544
CsaV3_4G029180	CmaCh03G001640	Cucurbita maxima (Rimu)	cmacucB0798
CsaV3_4G029180	CmaCh07G011120	Cucurbita maxima (Rimu)	cmacucB1021
CsaV3_4G029180	CmoCh03G001930	Cucurbita moschata (Rifu)	cmocucB0783
CsaV3_4G029180	CmoCh07G011600	Cucurbita moschata (Rifu)	cmocucB1005
CsaV3_4G029180	Cp4.1LG10g10700	Cucurbita pepo (Zucchini)	cpecucB0078
CsaV3_4G029180	Cp4.1LG19g02440	Cucurbita pepo (Zucchini)	cpecucB0599
CsaV3_4G029180	CsGy4G017870	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G029180	Carg13324	Silver-seed gourd	carcucB0616
CsaV3_4G029180	Carg26127	Silver-seed gourd	carcucB1008
CsaV3_4G029180	Cla012075	Watermelon (97103) v1	cucwmB358
CsaV3_4G029180	MELO3C019142	Melon (DHL92) v3.5.1	cucmeB337
CsaV3_4G029180	ClCG04G005960	Watermelon (Charleston Gray)	cucwcgB321
CsaV3_4G029180	Lsi01G017480	Bottle gourd (USVL1VR-Ls)	cuclsiB273
CsaV3_4G029180	MELO3C019142.2	Melon (DHL92) v3.6.1	cucmedB330
CsaV3_4G029180	Cla97C04G072530	Watermelon (97103) v2	cucwmbB310
CsaV3_4G029180	Bhi03G002081	Wax gourd	cucwgoB412

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None