Cp4.1LG10g10700 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG10g10700
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionE3 ubiquitin-protein ligase RING1-like
LocationCp4.1LG10 : 6707380 .. 6708300 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGAATGGTCGGAACACCCATTGGTGTTATAGATGCAGAAGTTCGGTACGTCCTCGAGGTAGAGATGCAGTTTGCCCCAACTGCAATGGAGGATTTATCCATGAACTCGATGATATGGTGCATGGAAACCCATTTGAATTCTTTGGTTTGGATGATGATGATGAAGTTCACAATCATGGTATGGGAGCATTCTCTGCTTTTATGAGACAGCGGTTAGCTGAAAGAAACGACATGAGGGGAAGATCAGAGTCGGTTTTCGAGCTTAGCCCGGGATTTGGACCGCTATTAGTGTTTGGTGGTCAAGTTCCAATGAGAAACAGCAGGTTAGAAGCTCTCTTCAATGGGGCTCCTGGCGTTGGCCTTACACGAGGCAATAGCGGCGACTACTTGATAGGCCCTGGACTGGAGGAGCTATTTGAACAGCTTTCAGGAAATGGTCATCGCGGTCCTCCGCCAGCATCTAGATCATCAATTGATGCAATACCAACTGTTAGGATCGCGCAACAACATCTTCGCTCGGATTCACATTGTCCAGTTTGCAAAGAAAAATTTGAACTCGGGTCTGAAGCTAGGCAGATGCCTTGTAGTCACATGTACCACTCAGATTGTATTGTTCCATGGCTAGTCCAACACAACTCTTGCCCTGTTTGTCGCCAGGAACTGCCACCACAAGGAGTAGGGGTCGGGGGCGGGGGCGGAGGCGGAGGCGGGGGACATATCGCCAATGGTCAAAACGAAAGCAGCAGCTACAACAGCGGTAATGGCTCCAGTATCAATCCAGGCAGACGCAATCCATTCTCTAATCTGTGGCCATTTAGGTCGTCTAATTCAAGGTCCAACCATGGCGGAGCAGGGAGTAGTGACCCGACGAACCACCAGATGGGGTATTCGGGATATCGATACACTAATTCACCATGA

mRNA sequence

ATGTCGAATGGTCGGAACACCCATTGGTGTTATAGATGCAGAAGTTCGGTACGTCCTCGAGGTAGAGATGCAGTTTGCCCCAACTGCAATGGAGGATTTATCCATGAACTCGATGATATGGTGCATGGAAACCCATTTGAATTCTTTGGTTTGGATGATGATGATGAAGTTCACAATCATGGTATGGGAGCATTCTCTGCTTTTATGAGACAGCGGTTAGCTGAAAGAAACGACATGAGGGGAAGATCAGAGTCGGTTTTCGAGCTTAGCCCGGGATTTGGACCGCTATTAGTGTTTGGTGGTCAAGTTCCAATGAGAAACAGCAGGTTAGAAGCTCTCTTCAATGGGGCTCCTGGCGTTGGCCTTACACGAGGCAATAGCGGCGACTACTTGATAGGCCCTGGACTGGAGGAGCTATTTGAACAGCTTTCAGGAAATGGTCATCGCGGTCCTCCGCCAGCATCTAGATCATCAATTGATGCAATACCAACTGTTAGGATCGCGCAACAACATCTTCGCTCGGATTCACATTGTCCAGTTTGCAAAGAAAAATTTGAACTCGGGTCTGAAGCTAGGCAGATGCCTTGTAGTCACATGTACCACTCAGATTGTATTGTTCCATGGCTAGTCCAACACAACTCTTGCCCTGTTTGTCGCCAGGAACTGCCACCACAAGGAGTAGGGGTCGGGGGCGGGGGCGGAGGCGGAGGCGGGGGACATATCGCCAATGGTCAAAACGAAAGCAGCAGCTACAACAGCGGTAATGGCTCCAGTATCAATCCAGGCAGACGCAATCCATTCTCTAATCTGTGGCCATTTAGGTCGTCTAATTCAAGGTCCAACCATGGCGGAGCAGGGAGTAGTGACCCGACGAACCACCAGATGGGGTATTCGGGATATCGATACACTAATTCACCATGA

Coding sequence (CDS)

ATGTCGAATGGTCGGAACACCCATTGGTGTTATAGATGCAGAAGTTCGGTACGTCCTCGAGGTAGAGATGCAGTTTGCCCCAACTGCAATGGAGGATTTATCCATGAACTCGATGATATGGTGCATGGAAACCCATTTGAATTCTTTGGTTTGGATGATGATGATGAAGTTCACAATCATGGTATGGGAGCATTCTCTGCTTTTATGAGACAGCGGTTAGCTGAAAGAAACGACATGAGGGGAAGATCAGAGTCGGTTTTCGAGCTTAGCCCGGGATTTGGACCGCTATTAGTGTTTGGTGGTCAAGTTCCAATGAGAAACAGCAGGTTAGAAGCTCTCTTCAATGGGGCTCCTGGCGTTGGCCTTACACGAGGCAATAGCGGCGACTACTTGATAGGCCCTGGACTGGAGGAGCTATTTGAACAGCTTTCAGGAAATGGTCATCGCGGTCCTCCGCCAGCATCTAGATCATCAATTGATGCAATACCAACTGTTAGGATCGCGCAACAACATCTTCGCTCGGATTCACATTGTCCAGTTTGCAAAGAAAAATTTGAACTCGGGTCTGAAGCTAGGCAGATGCCTTGTAGTCACATGTACCACTCAGATTGTATTGTTCCATGGCTAGTCCAACACAACTCTTGCCCTGTTTGTCGCCAGGAACTGCCACCACAAGGAGTAGGGGTCGGGGGCGGGGGCGGAGGCGGAGGCGGGGGACATATCGCCAATGGTCAAAACGAAAGCAGCAGCTACAACAGCGGTAATGGCTCCAGTATCAATCCAGGCAGACGCAATCCATTCTCTAATCTGTGGCCATTTAGGTCGTCTAATTCAAGGTCCAACCATGGCGGAGCAGGGAGTAGTGACCCGACGAACCACCAGATGGGGTATTCGGGATATCGATACACTAATTCACCATGA

Protein sequence

MSNGRNTHWCYRCRSSVRPRGRDAVCPNCNGGFIHELDDMVHGNPFEFFGLDDDDEVHNHGMGAFSAFMRQRLAERNDMRGRSESVFELSPGFGPLLVFGGQVPMRNSRLEALFNGAPGVGLTRGNSGDYLIGPGLEELFEQLSGNGHRGPPPASRSSIDAIPTVRIAQQHLRSDSHCPVCKEKFELGSEARQMPCSHMYHSDCIVPWLVQHNSCPVCRQELPPQGVGVGGGGGGGGGGHIANGQNESSSYNSGNGSSINPGRRNPFSNLWPFRSSNSRSNHGGAGSSDPTNHQMGYSGYRYTNSP
Homology
[Close]
BLAST of Cp4.1LG10g10700 vs. Swiss-Prot
Match: RHC1A_ARATH (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana GN=RHC1A PE=2 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 2.1e-83
Identity = 179/327 (54.74%), Postives = 220/327 (67.28%), Query Frame = 1 

Query: 1   MSNGRNTHWCYRCRSSVRPRGRDAVCPNCNGGFIHELDDMVHGNPFEFF----GLDDDDE 60
           MS+ RNTHWC+RC+ +VR  G++ VC  C GGF+ ELD M   +PF+ F    G+ + D+
Sbjct: 1   MSSSRNTHWCHRCQRAVRLHGQEPVCFYCGGGFVEELD-MAQASPFDMFRSHRGVVERDQ 60

Query: 61  VHNHGMGAFSAFMRQRLAERN---DMRGRS-ESVFELSPGFGPLLVFGGQVPMR---NSR 120
             +  M AFS FMR RLAER+   ++RGR+  S  E  PG  PLL+FGGQVP R   ++ 
Sbjct: 61  TFDL-MDAFSVFMRNRLAERSHDREIRGRTISSGPENFPGLAPLLIFGGQVPYRLTGDNA 120

Query: 121 LEALFNG-APGVGLTRGNSGDYLIGPGLEELFEQLS-GNGHRGPPPASRSSIDAIPTVRI 180
           +EALFNG +PG+G+TRGN+GDY  GPGLEELFEQLS G   RGPPPA RS+IDA+PT++I
Sbjct: 121 VEALFNGGSPGIGITRGNTGDYFFGPGLEELFEQLSAGTTRRGPPPAPRSAIDALPTIKI 180

Query: 181 AQQHLRS-DSHCPVCKEKFELGSEARQMPCSHMYHSDCIVPWLVQHNSCPVCRQELPPQG 240
           AQ+HLRS DS+CPVCK++FELGSEA+QMPC+H+YHSDCIVPWLVQHNSCPVCRQELP   
Sbjct: 181 AQRHLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP--- 240

Query: 241 VGVGGGGGGGGGGHIANGQNESSSYNSGNGSSINPGRRNPFSNLWPFRSSNSRS----NH 300
               G                SSS +S N       RRNPFS+ WPFRSS S S    N 
Sbjct: 241 -SASGPSSSQNRTTPTRNYRSSSSSSSSNSRENGNERRNPFSSFWPFRSSGSSSSSTQNR 300

[Close]
BLAST of Cp4.1LG10g10700 vs. Swiss-Prot
Match: RDUF2_ARATH (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 8.4e-32
Identity = 85/246 (34.55%), Postives = 119/246 (48.37%), Query Frame = 1 

Query: 7   THWCYRCRSSVR---PRGRDAV----CPNCNGGFIHELDDMVHGNPFEFFGLDDDDEVHN 66
           ++WCY C   V     +G   V    CP+C+GGFI +++D    +      +    EV +
Sbjct: 17  SYWCYSCTRFVSVWADQGTTTVGSVACPHCDGGFIEQINDS--SSAATELTIPASTEVRS 76

Query: 67  HGMGAFSAFMRQRLAERNDMRGRSESVFELSPGFGPLLVFGGQVPMRNS----------- 126
                 S   R+R   R              P F P++V  G    R             
Sbjct: 77  INNNRRSVIRRRRSGRR--------------PSFNPVIVLQGGAGEREEGEEGDAARDRR 136

Query: 127 RLEALFNGAPGVGLTR--GNSGDYLIGPGLEELFEQLS-------GNGHRGPPPASRSSI 186
             E  ++   G GL     +  + L+G G E L EQLS       G G  G PPAS+S+I
Sbjct: 137 AFEFYYDDGSGSGLRPLPDSVSEILMGSGFERLLEQLSQIEASATGIGRSGNPPASKSAI 196

Query: 187 DAIPTVRIAQQHLRSDSHCPVCKEKFELGSEARQMPCSHMYHSDCIVPWLVQHNSCPVCR 226
           +++P V I+  H+ S+++C VC E FE  +EAR+MPC H++H DCIVPWL   NSCPVCR
Sbjct: 197 ESLPRVEISDCHIGSEANCAVCTEIFETETEAREMPCKHLFHDDCIVPWLSIRNSCPVCR 246

[Close]
BLAST of Cp4.1LG10g10700 vs. Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 7.1e-31
Identity = 104/315 (33.02%), Postives = 142/315 (45.08%), Query Frame = 1 

Query: 9   WCYRCRSSVR---PRGRDAVCPNCNGGFIHELDD-----MVHGNPFE---FFGLDD---- 68
           +CY+C  +V        D  CP CN GF+ E +D      ++ NP     FF + D    
Sbjct: 22  FCYQCNQTVTISISSSADPFCPICNQGFLEEYEDPNPNQSLNFNPNSSDSFFPMADPFST 81

Query: 69  -------DDEVHNHGMGAFSAFMRQRLAERNDMRGRSESVFELSPGFGPLLVFGGQVPMR 128
                         GM   S F           + RS      S  F P       +   
Sbjct: 82  LLPLIFGSSAAAPSGMDFMSLF-----GPSMQPQARSTQQNPQSDAFDPFTFLQNHLQTL 141

Query: 129 NS---RLEALFNGAPGVGLTR--GNSGDYLIGPGLEELFEQLSGN--GHRGPPPASRSSI 188
            S     E +    P     R  GN GDY  GPGLE+L +QL+ N     G PPAS+S+I
Sbjct: 142 RSSGTHFEFVIENHPSDPGNRMPGNFGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAI 201

Query: 189 DAIPTVRIAQQHLRSD-SHCPVCKEKFELGSEARQMPCSHMYHSDCIVPWLVQHNSCPVC 248
           DA+PTV++ +  L+S+ + C VC ++FE GS+ +QMPC H++H DC++PWL  HNSCPVC
Sbjct: 202 DALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVC 261

Query: 249 RQELPPQGVGVGGGGGGGGGGHIANGQNESSSYNSGNGSSINPGRRNPFSNL---WPFRS 291
           R ELP           G  G              SG+G     G++ P  ++   WPFR 
Sbjct: 262 RFELPTDDPDYENRSQGSQG--------------SGDGQGSVEGQQTPRFSIQLPWPFR- 313

[Close]
BLAST of Cp4.1LG10g10700 vs. Swiss-Prot
Match: RDUF1_ARATH (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana GN=RDUF1 PE=1 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.2e-30
Identity = 83/241 (34.44%), Postives = 117/241 (48.55%), Query Frame = 1 

Query: 7   THWCYRCRSSV-----RPRGRDAVCPNCNGGFIHELDDMVHGN----PFEFFGLDDDDEV 66
           ++WCY C   +     +      +CP CNGGFI E++D  +      P     +   +E 
Sbjct: 30  SYWCYSCTRFISVWEDQDANAGVLCPYCNGGFIEEIEDSSNSTVAAIPASTPEVRSVEET 89

Query: 67  HNHGMGAFSAFMRQRLAERNDMRGRSESVFELSPGFGPLL------VFGGQVPMRNSRLE 126
           H        + +R+R   R++ R     V  L  G G           G          E
Sbjct: 90  HR-------SIIRRR---RSNRRTSFNPVIVLHGGGGGGAGERVENEEGDGATRERRAYE 149

Query: 127 ALFNGAPGVGLTR--GNSGDYLIGPGLEELFEQLS-------GNGHRGPPPASRSSIDAI 186
             ++   G GL     +  + L+G G E L EQLS       G G  G PPAS+S+I+++
Sbjct: 150 FYYDDGSGSGLRPLPDSVSEILMGSGFERLLEQLSQIEASGNGIGRSGNPPASKSAIESL 209

Query: 187 PTVRIAQQHLRSDSHCPVCKEKFELGSEARQMPCSHMYHSDCIVPWLVQHNSCPVCRQEL 224
           P V I+  H +++++C VC E FE G E R+MPC H++H DCIVPWL   NSCPVCR EL
Sbjct: 210 PRVEISDCHTKAEANCAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSIRNSCPVCRFEL 260

[Close]
BLAST of Cp4.1LG10g10700 vs. Swiss-Prot
Match: RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.9e-28
Identity = 65/136 (47.79%), Postives = 85/136 (62.50%), Query Frame = 1 

Query: 126 NSGDYLIGPGLEELFEQLSGN--GHRGPPPASRSSIDAIPTVRIAQQHLRSD-SHCPVCK 185
           N GDY IGPGLE+L +QL+ N     G PPAS+S+I+A+P V I + +L S+ + C VC 
Sbjct: 169 NIGDYFIGPGLEQLIQQLAENDPNRYGTPPASKSAIEALPLVNITKSNLNSEFNQCAVCM 228

Query: 186 EKFELGSEARQMPCSHMYHSDCIVPWLVQHNSCPVCRQELPPQ----------GVGVGGG 245
           + FE G+EA+QMPC H+YH DC++PWL  HNSCPVCR ELP              G  GG
Sbjct: 229 DDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHELPTDDPDYERRVRGAQGTSGG 288

Query: 246 GGGGGGGHIANGQNES 249
             G   G  ++G N +
Sbjct: 289 NDGDNSGQRSDGDNRT 304

[Close]
BLAST of Cp4.1LG10g10700 vs. TrEMBL
Match: A0A0A0L0T9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G419610 PE=4 SV=1)

HSP 1 Score: 538.5 bits (1386), Expect = 5.3e-150
Identity = 254/306 (83.01%), Postives = 280/306 (91.50%), Query Frame = 1 

Query: 1   MSNGRNTHWCYRCRSSVRPRGRDAVCPNCNGGFIHELDDMVHGNPFEFFGLDDDDEVHNH 60
           MS GRNTHWCYRCR SVR RGRDAVCPNCNGGFI ELDDMV GNPF+FFGLD D++  +H
Sbjct: 1   MSAGRNTHWCYRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDED-RDH 60

Query: 61  GMGAFSAFMRQRLAERNDMRGRSESVFELSPGFGPLLVFGGQVPMRNSRLEALFNGAPGV 120
           G+GAFSAFMRQRLAERNDMRGRSES+FE SPGFGPLL+FGGQ+P+RNSRLEALFNGAPG+
Sbjct: 61  GLGAFSAFMRQRLAERNDMRGRSESLFEHSPGFGPLLIFGGQIPLRNSRLEALFNGAPGI 120

Query: 121 GLTRGNSGDYLIGPGLEELFEQLSGNGHRGPPPASRSSIDAIPTVRIAQQHLRSDSHCPV 180
           G+TRG+SGDY IGPGLEELFEQLS NGHRGPPPASRSSIDA+PTV+I Q+HLRSDSHCPV
Sbjct: 121 GITRGDSGDYFIGPGLEELFEQLSENGHRGPPPASRSSIDAMPTVKITQRHLRSDSHCPV 180

Query: 181 CKEKFELGSEARQMPCSHMYHSDCIVPWLVQHNSCPVCRQELPPQGVGVGGGGGGGGGGH 240
           CKEKFELGSEARQM C+HMYHSDCIVPWL+QHNSCPVCRQELPPQG+      GGGGGGH
Sbjct: 181 CKEKFELGSEARQMACNHMYHSDCIVPWLIQHNSCPVCRQELPPQGI------GGGGGGH 240

Query: 241 IANGQNESSSYNSGNGSSINPGRRNPFSNLWPFRSSNSRSNHGGAGSSDPTNHQMGYSGY 300
             N QN S+SYN+G+GS +NPGRRNPFS LWPFRSS+S SNHGGAGSS+P+NHQMGYSGY
Sbjct: 241 STNDQNRSNSYNNGSGSRVNPGRRNPFSYLWPFRSSSSNSNHGGAGSSEPSNHQMGYSGY 299

Query: 301 RYTNSP 307
           RYT+SP
Sbjct: 301 RYTSSP 299

[Close]
BLAST of Cp4.1LG10g10700 vs. TrEMBL
Match: A0A061F2J2_THECC (RING-H2 finger C1A, putative OS=Theobroma cacao GN=TCM_023780 PE=4 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 6.5e-108
Identity = 206/318 (64.78%), Postives = 242/318 (76.10%), Query Frame = 1 

Query: 1   MSNGRNTHWCYRCRSSVRPRGRDAVCPNCNGGFIHELDDMVHGNPFEFFGLD-DDDEVHN 60
           MS GRNTHWCYRCR  V  +GRDAVC  C GGF+ ELDDMVH +P +FFGLD D+D +  
Sbjct: 1   MSTGRNTHWCYRCRRPVLLQGRDAVCCYCRGGFVQELDDMVHISPLDFFGLDGDEDRIQR 60

Query: 61  HG-MGAFSAFMRQRLAERN---DMRGRSESVFELSPGFGPLLVFGGQVPMR---NSRLEA 120
            G M AFSA MRQRLA+RN   ++RGR++S+ E +  FGPLL+FGGQ+P R   N   EA
Sbjct: 61  FGLMDAFSALMRQRLADRNFNHNIRGRTDSIPENTSPFGPLLIFGGQIPFRLSGNGGFEA 120

Query: 121 LFNGAPGVGLTRGNSGDYLIGPGLEELFEQLSGNGHRGPPPASRSSIDAIPTVRIAQQHL 180
           LFNGAPG+G TRGN+GDY IGPGLEELFEQLS N  RGPPPASRSSIDA+PT++I+++HL
Sbjct: 121 LFNGAPGIGFTRGNAGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPTIKISRRHL 180

Query: 181 RSDSHCPVCKEKFELGSEARQMPCSHMYHSDCIVPWLVQHNSCPVCRQELPPQGVGVGGG 240
            SDSHCPVCK+KFELGSEARQMPC+H+YHSDCI+PWL QHNSCPVCRQELPPQG G    
Sbjct: 181 HSDSHCPVCKDKFELGSEARQMPCNHIYHSDCIIPWLEQHNSCPVCRQELPPQGPG---- 240

Query: 241 GGGGGGGHIANGQNESSSY---NSGNGSSINPGRRNPFSNLWPFRSSNSRSNH-GGAGSS 300
                  + ++GQ+ SSS    +SG  S  N  RRNPFS  WPFRSSNS S+H G AGSS
Sbjct: 241 ---SSRNYHSSGQSSSSSLGTNSSGRESRENHSRRNPFSYFWPFRSSNSSSSHNGAAGSS 300

Query: 301 DPT----NHQMGYSGYRY 303
            P+    NH MGYSG+ +
Sbjct: 301 SPSVHENNHSMGYSGWPF 311

[Close]
BLAST of Cp4.1LG10g10700 vs. TrEMBL
Match: B9HDT7_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0006s03070g PE=4 SV=2)

HSP 1 Score: 390.2 bits (1001), Expect = 2.3e-105
Identity = 201/315 (63.81%), Postives = 237/315 (75.24%), Query Frame = 1 

Query: 1   MSNGRNTHWCYRCRSSVRPRGRDAVCPNCNGGFIHELDDMVHGNPFEFFGLDDDDEVHNH 60
           MS+ RNTHWCY CR  VR RGRDA CP C+GGF+ ELDDM   NP +FFG+D DD+  N 
Sbjct: 1   MSSSRNTHWCYSCRRPVRLRGRDAACPYCSGGFVQELDDMHRINPLDFFGMDGDDDHDNM 60

Query: 61  G--MGAFSAFMRQRLAERN---DMRGRSESVFELSPGFGPLLVFGGQVPMR---NSRLEA 120
              M AFSAFMRQR+A+R+   D+R RS+S+ E +PGFGPLL+FGGQ+P R   N  LEA
Sbjct: 61  FGLMEAFSAFMRQRMADRSHNHDIRSRSDSIPEHNPGFGPLLIFGGQIPFRLSGNGGLEA 120

Query: 121 LFNGAPGVGLTRGNSGDYLIGPGLEELFEQLSGNGHRGPPPASRSSIDAIPTVRIAQQHL 180
           LF+G+PGV   RGN+GDY +GPGLEELFEQLS N  RGP PA+RSSIDA+PTV+I Q+HL
Sbjct: 121 LFSGSPGVAFARGNAGDYFVGPGLEELFEQLSANDRRGPAPATRSSIDAMPTVKITQRHL 180

Query: 181 RSDSHCPVCKEKFELGSEARQMPCSHMYHSDCIVPWLVQHNSCPVCRQELPPQGVGVGGG 240
           R+DSHCPVCK+KFELGSEARQMPC+H+YHSDCIVPWLVQHNSCPVCRQELPPQ      G
Sbjct: 181 RTDSHCPVCKDKFELGSEARQMPCNHLYHSDCIVPWLVQHNSCPVCRQELPPQ------G 240

Query: 241 GGGGGGGHIANGQNESSSYNSGNGSSINPGRRNPFSNLWPFRSSNSRSNHGGA-GSSDPT 300
              G     ++ ++ +S+Y+    S    GRRNP S LWPFRSSNS SNH    GSS PT
Sbjct: 241 SNSGHSYQSSSSRSRNSNYSGRENS--REGRRNPLSYLWPFRSSNSSSNHDETPGSSSPT 300

Query: 301 ----NHQMGYSGYRY 303
               NHQMGYSG+ +
Sbjct: 301 MHENNHQMGYSGWPF 307

[Close]
BLAST of Cp4.1LG10g10700 vs. TrEMBL
Match: V4SSL7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012279mg PE=4 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 9.8e-104
Identity = 199/314 (63.38%), Postives = 234/314 (74.52%), Query Frame = 1 

Query: 1   MSNGRNTHWCYRCRSSVRPRGRDAVCPNCNGGFIHELDDMVHGNPFEFFGLDDDDEVHNH 60
           MS+GRNTHWCYRCR  VR +G DAVC  C+GGF+ ELDDMV  +P +FFGLD+D+E    
Sbjct: 1   MSSGRNTHWCYRCRRPVRLQGEDAVCLYCSGGFVQELDDMVSVSPLDFFGLDNDEERDQR 60

Query: 61  G--MGAFSAFMRQRLAERN--DMRGRSESVFELSPGFGPLLVFGGQVPMR---NSRLEAL 120
              M AFSAFMR R+A+R+  D+RGR +S  E   GFGPLL+FGGQ+P+R   NS  EA+
Sbjct: 61  LGLMEAFSAFMRHRMADRHSHDIRGRYDSTPEHGQGFGPLLIFGGQIPLRLSGNSGFEAI 120

Query: 121 FNGAPGVGLTRGNSGDYLIGPGLEELFEQLSGNGHRGPPPASRSSIDAIPTVRIAQQHLR 180
           F GAPG+G  RGN+GDY IGPGLEELFEQLS NG RGPPPA+RS+IDA+PTVRI Q+HLR
Sbjct: 121 FGGAPGLGFARGNTGDYFIGPGLEELFEQLSANGRRGPPPAARSAIDAMPTVRITQRHLR 180

Query: 181 SDSHCPVCKEKFELGSEARQMPCSHMYHSDCIVPWLVQHNSCPVCRQELPPQGVGVGGGG 240
           SDSHCPVC++KFELGSEARQMPC+H+YHSDCIVPWLVQHNSCPVCRQELP QG       
Sbjct: 181 SDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPLQG------S 240

Query: 241 GGGGGGHIANGQNESSSYNSGNGSSINPGRRNPFSNLWPFRSSNSRSNHGG-AGSSDPTN 300
                   ++GQ+ S+S+ S      N GRRN FS  WPFRSSNS SNH G   SS P  
Sbjct: 241 SSSRIHQSSSGQSRSTSFGSNGSGRENQGRRNLFSGFWPFRSSNSSSNHNGTTESSSPAM 300

Query: 301 HQ----MGYSGYRY 303
           H+    MGYSG+ +
Sbjct: 301 HENNPHMGYSGWPF 308

[Close]
BLAST of Cp4.1LG10g10700 vs. TrEMBL
Match: A0A067EQC1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021656mg PE=4 SV=1)

HSP 1 Score: 383.3 bits (983), Expect = 2.8e-103
Identity = 198/314 (63.06%), Postives = 234/314 (74.52%), Query Frame = 1 

Query: 1   MSNGRNTHWCYRCRSSVRPRGRDAVCPNCNGGFIHELDDMVHGNPFEFFGLDDDDEVHNH 60
           MS+GRNTHWCYRCR  VR +G DAVC  C+GGF+ ELDDMV  +P +FFGLD+D+E    
Sbjct: 1   MSSGRNTHWCYRCRRPVRLQGEDAVCLYCSGGFVQELDDMVSVSPLDFFGLDNDEERDQR 60

Query: 61  G--MGAFSAFMRQRLAERN--DMRGRSESVFELSPGFGPLLVFGGQVPMR---NSRLEAL 120
              M AFSAF+R R+A+R+  D+RGR +S  E   GFGPLL+FGGQ+P+R   NS  EA+
Sbjct: 61  LGLMEAFSAFVRHRMADRHSHDIRGRYDSTPEHGQGFGPLLIFGGQIPLRLSGNSGFEAI 120

Query: 121 FNGAPGVGLTRGNSGDYLIGPGLEELFEQLSGNGHRGPPPASRSSIDAIPTVRIAQQHLR 180
           F GAPG+G  RGN+GDY IGPGLEELFEQLS NG RGPPPA+RS+IDA+PTVRI Q+HLR
Sbjct: 121 FGGAPGLGFARGNTGDYFIGPGLEELFEQLSANGRRGPPPAARSAIDAMPTVRITQRHLR 180

Query: 181 SDSHCPVCKEKFELGSEARQMPCSHMYHSDCIVPWLVQHNSCPVCRQELPPQGVGVGGGG 240
           SDSHCPVC++KFELGSEARQMPC+H+YHSDCIVPWLVQHNSCPVCRQELP QG       
Sbjct: 181 SDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPLQG------S 240

Query: 241 GGGGGGHIANGQNESSSYNSGNGSSINPGRRNPFSNLWPFRSSNSRSNHGG-AGSSDPTN 300
                   ++GQ+ S+S+ S      N GRRN FS  WPFRSSNS SNH G   SS P  
Sbjct: 241 SSSRIHQSSSGQSRSTSFGSNGSGRENQGRRNLFSGFWPFRSSNSSSNHNGTTESSSPAM 300

Query: 301 HQ----MGYSGYRY 303
           H+    MGYSG+ +
Sbjct: 301 HENNPHMGYSGWPF 308

[Close]
BLAST of Cp4.1LG10g10700 vs. TAIR10
Match: AT2G40830.2 (AT2G40830.2 RING-H2 finger C1A)

HSP 1 Score: 310.5 bits (794), Expect = 1.2e-84
Identity = 179/327 (54.74%), Postives = 220/327 (67.28%), Query Frame = 1 

Query: 1   MSNGRNTHWCYRCRSSVRPRGRDAVCPNCNGGFIHELDDMVHGNPFEFF----GLDDDDE 60
           MS+ RNTHWC+RC+ +VR  G++ VC  C GGF+ ELD M   +PF+ F    G+ + D+
Sbjct: 1   MSSSRNTHWCHRCQRAVRLHGQEPVCFYCGGGFVEELD-MAQASPFDMFRSHRGVVERDQ 60

Query: 61  VHNHGMGAFSAFMRQRLAERN---DMRGRS-ESVFELSPGFGPLLVFGGQVPMR---NSR 120
             +  M AFS FMR RLAER+   ++RGR+  S  E  PG  PLL+FGGQVP R   ++ 
Sbjct: 61  TFDL-MDAFSVFMRNRLAERSHDREIRGRTISSGPENFPGLAPLLIFGGQVPYRLTGDNA 120

Query: 121 LEALFNG-APGVGLTRGNSGDYLIGPGLEELFEQLS-GNGHRGPPPASRSSIDAIPTVRI 180
           +EALFNG +PG+G+TRGN+GDY  GPGLEELFEQLS G   RGPPPA RS+IDA+PT++I
Sbjct: 121 VEALFNGGSPGIGITRGNTGDYFFGPGLEELFEQLSAGTTRRGPPPAPRSAIDALPTIKI 180

Query: 181 AQQHLRS-DSHCPVCKEKFELGSEARQMPCSHMYHSDCIVPWLVQHNSCPVCRQELPPQG 240
           AQ+HLRS DS+CPVCK++FELGSEA+QMPC+H+YHSDCIVPWLVQHNSCPVCRQELP   
Sbjct: 181 AQRHLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP--- 240

Query: 241 VGVGGGGGGGGGGHIANGQNESSSYNSGNGSSINPGRRNPFSNLWPFRSSNSRS----NH 300
               G                SSS +S N       RRNPFS+ WPFRSS S S    N 
Sbjct: 241 -SASGPSSSQNRTTPTRNYRSSSSSSSSNSRENGNERRNPFSSFWPFRSSGSSSSSTQNR 300

[Close]
BLAST of Cp4.1LG10g10700 vs. TAIR10
Match: AT3G56580.2 (AT3G56580.2 RING/U-box superfamily protein)

HSP 1 Score: 282.7 bits (722), Expect = 2.7e-76
Identity = 163/318 (51.26%), Postives = 200/318 (62.89%), Query Frame = 1 

Query: 1   MSNGRNTHWCYRCRSSVRPRGRDAVCPNCNGGFIHELD--------DMVHGNPFEFFGLD 60
           MS+ RNTHWC+RC+ +V  R RDAVC  C GGF+ E+D        D+     F+     
Sbjct: 1   MSSIRNTHWCHRCQRAVWLRARDAVCSYCGGGFVEEIDIGPSRAHRDVERDPTFDL---- 60

Query: 61  DDDEVHNHGMGAFSAFMRQRLAERN---DMRGRSESV-FELSPGFGPLLVFGGQVPMR-- 120
                    M AFSAFMR RLAER+   ++ GR  S   E      PLL+FGGQ P R  
Sbjct: 61  ---------MEAFSAFMRSRLAERSYDREISGRLGSAGSESFSNLAPLLIFGGQAPFRLA 120

Query: 121 ---NSRLEALFNGA-PGVGLTRG-NSGDYLIGPGLEELFEQLS-GNGHRGPPPASRSSID 180
              NS +EA  NGA PG+G+ RG N+GDY  GPGLEEL EQLS G  HRGPPPA +SSID
Sbjct: 121 GGDNSSVEAFVNGAAPGIGIARGTNAGDYFFGPGLEELIEQLSSGTHHRGPPPAPKSSID 180

Query: 181 AIPTVRIAQQHLRS-DSHCPVCKEKFELGSEARQMPCSHMYHSDCIVPWLVQHNSCPVCR 240
           A+PT++I Q+HL+S DSHCPVCK++FEL SEA+QMPC H+YHSDCIVPWLVQHNSCPVCR
Sbjct: 181 ALPTIKITQKHLKSSDSHCPVCKDEFELKSEAKQMPCHHIYHSDCIVPWLVQHNSCPVCR 240

Query: 241 QELPPQGVGVGGGGGGGGGGHIANGQNESSSYNSGNGSSINPGRRNPFSNLWPFRSSNSR 298
           +ELP +G               ++   +SS   S NG   N  RRN FSNLWPFRSS+S 
Sbjct: 241 KELPSRG---------------SSSSTQSSQNRSTNGRE-NSRRRNIFSNLWPFRSSSSS 289

[Close]
BLAST of Cp4.1LG10g10700 vs. TAIR10
Match: AT5G59550.1 (AT5G59550.1 zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 139.0 bits (349), Expect = 4.7e-33
Identity = 85/246 (34.55%), Postives = 119/246 (48.37%), Query Frame = 1 

Query: 7   THWCYRCRSSVR---PRGRDAV----CPNCNGGFIHELDDMVHGNPFEFFGLDDDDEVHN 66
           ++WCY C   V     +G   V    CP+C+GGFI +++D    +      +    EV +
Sbjct: 17  SYWCYSCTRFVSVWADQGTTTVGSVACPHCDGGFIEQINDS--SSAATELTIPASTEVRS 76

Query: 67  HGMGAFSAFMRQRLAERNDMRGRSESVFELSPGFGPLLVFGGQVPMRNS----------- 126
                 S   R+R   R              P F P++V  G    R             
Sbjct: 77  INNNRRSVIRRRRSGRR--------------PSFNPVIVLQGGAGEREEGEEGDAARDRR 136

Query: 127 RLEALFNGAPGVGLTR--GNSGDYLIGPGLEELFEQLS-------GNGHRGPPPASRSSI 186
             E  ++   G GL     +  + L+G G E L EQLS       G G  G PPAS+S+I
Sbjct: 137 AFEFYYDDGSGSGLRPLPDSVSEILMGSGFERLLEQLSQIEASATGIGRSGNPPASKSAI 196

Query: 187 DAIPTVRIAQQHLRSDSHCPVCKEKFELGSEARQMPCSHMYHSDCIVPWLVQHNSCPVCR 226
           +++P V I+  H+ S+++C VC E FE  +EAR+MPC H++H DCIVPWL   NSCPVCR
Sbjct: 197 ESLPRVEISDCHIGSEANCAVCTEIFETETEAREMPCKHLFHDDCIVPWLSIRNSCPVCR 246

[Close]
BLAST of Cp4.1LG10g10700 vs. TAIR10
Match: AT3G19950.1 (AT3G19950.1 RING/U-box superfamily protein)

HSP 1 Score: 136.0 bits (341), Expect = 4.0e-32
Identity = 104/315 (33.02%), Postives = 142/315 (45.08%), Query Frame = 1 

Query: 9   WCYRCRSSVR---PRGRDAVCPNCNGGFIHELDD-----MVHGNPFE---FFGLDD---- 68
           +CY+C  +V        D  CP CN GF+ E +D      ++ NP     FF + D    
Sbjct: 22  FCYQCNQTVTISISSSADPFCPICNQGFLEEYEDPNPNQSLNFNPNSSDSFFPMADPFST 81

Query: 69  -------DDEVHNHGMGAFSAFMRQRLAERNDMRGRSESVFELSPGFGPLLVFGGQVPMR 128
                         GM   S F           + RS      S  F P       +   
Sbjct: 82  LLPLIFGSSAAAPSGMDFMSLF-----GPSMQPQARSTQQNPQSDAFDPFTFLQNHLQTL 141

Query: 129 NS---RLEALFNGAPGVGLTR--GNSGDYLIGPGLEELFEQLSGN--GHRGPPPASRSSI 188
            S     E +    P     R  GN GDY  GPGLE+L +QL+ N     G PPAS+S+I
Sbjct: 142 RSSGTHFEFVIENHPSDPGNRMPGNFGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAI 201

Query: 189 DAIPTVRIAQQHLRSD-SHCPVCKEKFELGSEARQMPCSHMYHSDCIVPWLVQHNSCPVC 248
           DA+PTV++ +  L+S+ + C VC ++FE GS+ +QMPC H++H DC++PWL  HNSCPVC
Sbjct: 202 DALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVC 261

Query: 249 RQELPPQGVGVGGGGGGGGGGHIANGQNESSSYNSGNGSSINPGRRNPFSNL---WPFRS 291
           R ELP           G  G              SG+G     G++ P  ++   WPFR 
Sbjct: 262 RFELPTDDPDYENRSQGSQG--------------SGDGQGSVEGQQTPRFSIQLPWPFR- 313

[Close]
BLAST of Cp4.1LG10g10700 vs. TAIR10
Match: AT3G46620.1 (AT3G46620.1 zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 135.2 bits (339), Expect = 6.8e-32
Identity = 83/241 (34.44%), Postives = 117/241 (48.55%), Query Frame = 1 

Query: 7   THWCYRCRSSV-----RPRGRDAVCPNCNGGFIHELDDMVHGN----PFEFFGLDDDDEV 66
           ++WCY C   +     +      +CP CNGGFI E++D  +      P     +   +E 
Sbjct: 30  SYWCYSCTRFISVWEDQDANAGVLCPYCNGGFIEEIEDSSNSTVAAIPASTPEVRSVEET 89

Query: 67  HNHGMGAFSAFMRQRLAERNDMRGRSESVFELSPGFGPLL------VFGGQVPMRNSRLE 126
           H        + +R+R   R++ R     V  L  G G           G          E
Sbjct: 90  HR-------SIIRRR---RSNRRTSFNPVIVLHGGGGGGAGERVENEEGDGATRERRAYE 149

Query: 127 ALFNGAPGVGLTR--GNSGDYLIGPGLEELFEQLS-------GNGHRGPPPASRSSIDAI 186
             ++   G GL     +  + L+G G E L EQLS       G G  G PPAS+S+I+++
Sbjct: 150 FYYDDGSGSGLRPLPDSVSEILMGSGFERLLEQLSQIEASGNGIGRSGNPPASKSAIESL 209

Query: 187 PTVRIAQQHLRSDSHCPVCKEKFELGSEARQMPCSHMYHSDCIVPWLVQHNSCPVCRQEL 224
           P V I+  H +++++C VC E FE G E R+MPC H++H DCIVPWL   NSCPVCR EL
Sbjct: 210 PRVEISDCHTKAEANCAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSIRNSCPVCRFEL 260

[Close]
BLAST of Cp4.1LG10g10700 vs. NCBI nr
Match: gi|449453133|ref|XP_004144313.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis sativus])

HSP 1 Score: 538.5 bits (1386), Expect = 7.6e-150
Identity = 254/306 (83.01%), Postives = 280/306 (91.50%), Query Frame = 1 

Query: 1   MSNGRNTHWCYRCRSSVRPRGRDAVCPNCNGGFIHELDDMVHGNPFEFFGLDDDDEVHNH 60
           MS GRNTHWCYRCR SVR RGRDAVCPNCNGGFI ELDDMV GNPF+FFGLD D++  +H
Sbjct: 1   MSAGRNTHWCYRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDED-RDH 60

Query: 61  GMGAFSAFMRQRLAERNDMRGRSESVFELSPGFGPLLVFGGQVPMRNSRLEALFNGAPGV 120
           G+GAFSAFMRQRLAERNDMRGRSES+FE SPGFGPLL+FGGQ+P+RNSRLEALFNGAPG+
Sbjct: 61  GLGAFSAFMRQRLAERNDMRGRSESLFEHSPGFGPLLIFGGQIPLRNSRLEALFNGAPGI 120

Query: 121 GLTRGNSGDYLIGPGLEELFEQLSGNGHRGPPPASRSSIDAIPTVRIAQQHLRSDSHCPV 180
           G+TRG+SGDY IGPGLEELFEQLS NGHRGPPPASRSSIDA+PTV+I Q+HLRSDSHCPV
Sbjct: 121 GITRGDSGDYFIGPGLEELFEQLSENGHRGPPPASRSSIDAMPTVKITQRHLRSDSHCPV 180

Query: 181 CKEKFELGSEARQMPCSHMYHSDCIVPWLVQHNSCPVCRQELPPQGVGVGGGGGGGGGGH 240
           CKEKFELGSEARQM C+HMYHSDCIVPWL+QHNSCPVCRQELPPQG+      GGGGGGH
Sbjct: 181 CKEKFELGSEARQMACNHMYHSDCIVPWLIQHNSCPVCRQELPPQGI------GGGGGGH 240

Query: 241 IANGQNESSSYNSGNGSSINPGRRNPFSNLWPFRSSNSRSNHGGAGSSDPTNHQMGYSGY 300
             N QN S+SYN+G+GS +NPGRRNPFS LWPFRSS+S SNHGGAGSS+P+NHQMGYSGY
Sbjct: 241 STNDQNRSNSYNNGSGSRVNPGRRNPFSYLWPFRSSSSNSNHGGAGSSEPSNHQMGYSGY 299

Query: 301 RYTNSP 307
           RYT+SP
Sbjct: 301 RYTSSP 299

[Close]
BLAST of Cp4.1LG10g10700 vs. NCBI nr
Match: gi|659111475|ref|XP_008455755.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo])

HSP 1 Score: 529.6 bits (1363), Expect = 3.5e-147
Identity = 250/306 (81.70%), Postives = 277/306 (90.52%), Query Frame = 1 

Query: 1   MSNGRNTHWCYRCRSSVRPRGRDAVCPNCNGGFIHELDDMVHGNPFEFFGLDDDDEVHNH 60
           MS GRNTHWCYRCR SVR  GRDAVCPNCNGGFI ELDDMV GNPF+FFGLD D++  +H
Sbjct: 1   MSAGRNTHWCYRCRRSVRLCGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDED-RDH 60

Query: 61  GMGAFSAFMRQRLAERNDMRGRSESVFELSPGFGPLLVFGGQVPMRNSRLEALFNGAPGV 120
           G+GAFSAFMRQRLAERNDMRGRSES+FE SPGFGPLL+FGGQ+P+RNSRLEALFNGAPG+
Sbjct: 61  GLGAFSAFMRQRLAERNDMRGRSESLFEHSPGFGPLLIFGGQIPLRNSRLEALFNGAPGI 120

Query: 121 GLTRGNSGDYLIGPGLEELFEQLSGNGHRGPPPASRSSIDAIPTVRIAQQHLRSDSHCPV 180
           G+TRG+SGDY IGPGLEELFE+LS NGHRGPPPASRSSIDA+PTV+I  +HLRSDSHCPV
Sbjct: 121 GITRGDSGDYFIGPGLEELFERLSANGHRGPPPASRSSIDAMPTVKITHRHLRSDSHCPV 180

Query: 181 CKEKFELGSEARQMPCSHMYHSDCIVPWLVQHNSCPVCRQELPPQGVGVGGGGGGGGGGH 240
           CKEKFELGSEARQM C+HMYHSDCIVPWL+QHNSCPVCRQELP QG+      GGGGGGH
Sbjct: 181 CKEKFELGSEARQMACNHMYHSDCIVPWLIQHNSCPVCRQELPSQGI------GGGGGGH 240

Query: 241 IANGQNESSSYNSGNGSSINPGRRNPFSNLWPFRSSNSRSNHGGAGSSDPTNHQMGYSGY 300
             N QN S+SY++G+GS +NPGRRNPFS LWPFRSS+S SNHGGAGSS+P+NHQMGYSGY
Sbjct: 241 STNDQNRSNSYSNGSGSRVNPGRRNPFSYLWPFRSSSSNSNHGGAGSSEPSNHQMGYSGY 299

Query: 301 RYTNSP 307
           RYTNSP
Sbjct: 301 RYTNSP 299

[Close]
BLAST of Cp4.1LG10g10700 vs. NCBI nr
Match: gi|590633800|ref|XP_007028207.1| (RING-H2 finger C1A, putative [Theobroma cacao])

HSP 1 Score: 398.7 bits (1023), Expect = 9.4e-108
Identity = 206/318 (64.78%), Postives = 242/318 (76.10%), Query Frame = 1 

Query: 1   MSNGRNTHWCYRCRSSVRPRGRDAVCPNCNGGFIHELDDMVHGNPFEFFGLD-DDDEVHN 60
           MS GRNTHWCYRCR  V  +GRDAVC  C GGF+ ELDDMVH +P +FFGLD D+D +  
Sbjct: 1   MSTGRNTHWCYRCRRPVLLQGRDAVCCYCRGGFVQELDDMVHISPLDFFGLDGDEDRIQR 60

Query: 61  HG-MGAFSAFMRQRLAERN---DMRGRSESVFELSPGFGPLLVFGGQVPMR---NSRLEA 120
            G M AFSA MRQRLA+RN   ++RGR++S+ E +  FGPLL+FGGQ+P R   N   EA
Sbjct: 61  FGLMDAFSALMRQRLADRNFNHNIRGRTDSIPENTSPFGPLLIFGGQIPFRLSGNGGFEA 120

Query: 121 LFNGAPGVGLTRGNSGDYLIGPGLEELFEQLSGNGHRGPPPASRSSIDAIPTVRIAQQHL 180
           LFNGAPG+G TRGN+GDY IGPGLEELFEQLS N  RGPPPASRSSIDA+PT++I+++HL
Sbjct: 121 LFNGAPGIGFTRGNAGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPTIKISRRHL 180

Query: 181 RSDSHCPVCKEKFELGSEARQMPCSHMYHSDCIVPWLVQHNSCPVCRQELPPQGVGVGGG 240
            SDSHCPVCK+KFELGSEARQMPC+H+YHSDCI+PWL QHNSCPVCRQELPPQG G    
Sbjct: 181 HSDSHCPVCKDKFELGSEARQMPCNHIYHSDCIIPWLEQHNSCPVCRQELPPQGPG---- 240

Query: 241 GGGGGGGHIANGQNESSSY---NSGNGSSINPGRRNPFSNLWPFRSSNSRSNH-GGAGSS 300
                  + ++GQ+ SSS    +SG  S  N  RRNPFS  WPFRSSNS S+H G AGSS
Sbjct: 241 ---SSRNYHSSGQSSSSSLGTNSSGRESRENHSRRNPFSYFWPFRSSNSSSSHNGAAGSS 300

Query: 301 DPT----NHQMGYSGYRY 303
            P+    NH MGYSG+ +
Sbjct: 301 SPSVHENNHSMGYSGWPF 311

[Close]
BLAST of Cp4.1LG10g10700 vs. NCBI nr
Match: gi|566174207|ref|XP_002308856.2| (zinc finger family protein [Populus trichocarpa])

HSP 1 Score: 390.2 bits (1001), Expect = 3.3e-105
Identity = 201/315 (63.81%), Postives = 237/315 (75.24%), Query Frame = 1 

Query: 1   MSNGRNTHWCYRCRSSVRPRGRDAVCPNCNGGFIHELDDMVHGNPFEFFGLDDDDEVHNH 60
           MS+ RNTHWCY CR  VR RGRDA CP C+GGF+ ELDDM   NP +FFG+D DD+  N 
Sbjct: 1   MSSSRNTHWCYSCRRPVRLRGRDAACPYCSGGFVQELDDMHRINPLDFFGMDGDDDHDNM 60

Query: 61  G--MGAFSAFMRQRLAERN---DMRGRSESVFELSPGFGPLLVFGGQVPMR---NSRLEA 120
              M AFSAFMRQR+A+R+   D+R RS+S+ E +PGFGPLL+FGGQ+P R   N  LEA
Sbjct: 61  FGLMEAFSAFMRQRMADRSHNHDIRSRSDSIPEHNPGFGPLLIFGGQIPFRLSGNGGLEA 120

Query: 121 LFNGAPGVGLTRGNSGDYLIGPGLEELFEQLSGNGHRGPPPASRSSIDAIPTVRIAQQHL 180
           LF+G+PGV   RGN+GDY +GPGLEELFEQLS N  RGP PA+RSSIDA+PTV+I Q+HL
Sbjct: 121 LFSGSPGVAFARGNAGDYFVGPGLEELFEQLSANDRRGPAPATRSSIDAMPTVKITQRHL 180

Query: 181 RSDSHCPVCKEKFELGSEARQMPCSHMYHSDCIVPWLVQHNSCPVCRQELPPQGVGVGGG 240
           R+DSHCPVCK+KFELGSEARQMPC+H+YHSDCIVPWLVQHNSCPVCRQELPPQ      G
Sbjct: 181 RTDSHCPVCKDKFELGSEARQMPCNHLYHSDCIVPWLVQHNSCPVCRQELPPQ------G 240

Query: 241 GGGGGGGHIANGQNESSSYNSGNGSSINPGRRNPFSNLWPFRSSNSRSNHGGA-GSSDPT 300
              G     ++ ++ +S+Y+    S    GRRNP S LWPFRSSNS SNH    GSS PT
Sbjct: 241 SNSGHSYQSSSSRSRNSNYSGRENS--REGRRNPLSYLWPFRSSNSSSNHDETPGSSSPT 300

Query: 301 ----NHQMGYSGYRY 303
               NHQMGYSG+ +
Sbjct: 301 MHENNHQMGYSGWPF 307

[Close]
BLAST of Cp4.1LG10g10700 vs. NCBI nr
Match: gi|1000954817|ref|XP_015578080.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Ricinus communis])

HSP 1 Score: 389.8 bits (1000), Expect = 4.4e-105
Identity = 201/314 (64.01%), Postives = 231/314 (73.57%), Query Frame = 1 

Query: 1   MSNGRNTHWCYRCRSSVRPRGRDAVCPNCNGGFIHELDDMVHGNPFEFFGLD-DDDEVHN 60
           MS+GRNTHWCY CR  VR RGRDAVCP C GGF+ ELDDMV  NP +FFGLD DDD    
Sbjct: 1   MSSGRNTHWCYSCRRPVRLRGRDAVCPYCTGGFVQELDDMVQFNPLDFFGLDNDDDREQR 60

Query: 61  HG-MGAFSAFMRQRLAERN-DMRGRSESVFELSPGFGPLLVFGGQVPMR---NSRLEALF 120
           +G M AFSAFMR RLA+R+ D R RS+S+ E +PGFGPLL+FGGQ+P R   N   EALF
Sbjct: 61  YGLMEAFSAFMRHRLAQRSHDTRMRSDSIPEPTPGFGPLLIFGGQIPFRLSGNGGFEALF 120

Query: 121 NGAPGVGLTRGNSGDYLIGPGLEELFEQLSGNGHRGPPPASRSSIDAIPTVRIAQQHLRS 180
            GAPG   TRGN+GDY IGPGLEELFEQLS N  RGPPPAS SSIDA+PT++I Q+HLR+
Sbjct: 121 PGAPGFAFTRGNTGDYFIGPGLEELFEQLSANDRRGPPPASSSSIDAMPTIKITQRHLRT 180

Query: 181 DSHCPVCKEKFELGSEARQMPCSHMYHSDCIVPWLVQHNSCPVCRQELPPQGVGVGGGGG 240
           DSHCPVCK+KFELGSEARQMPC+HMYHSDCIVPWLVQHNSCPVCRQELPPQ        G
Sbjct: 181 DSHCPVCKDKFELGSEARQMPCNHMYHSDCIVPWLVQHNSCPVCRQELPPQ--------G 240

Query: 241 GGGGGHIANGQNESSSYNSGNGSSINPGRRNPFSNLWPFRSSNSRSNH-GGAGSSDPT-- 300
             G     +  + S + +     ++  GRRNP S LWPFR+S S SN+ G  GSS  T  
Sbjct: 241 SSGSSSYQSSSSRSGNNHYNGRENVREGRRNPLSYLWPFRTSTSSSNNDGSTGSSSATVH 300

Query: 301 ---NHQMGYSGYRY 303
              +HQ GYSG+ +
Sbjct: 301 ENNHHQTGYSGWPF 306

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g10700 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RHC1A_ARATH2.1e-8354.74Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana GN=RHC1A PE=2... [more]
RDUF2_ARATH8.4e-3234.55E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1[more]
RNG1L_ARATH7.1e-3133.02E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1... [more]
RDUF1_ARATH1.2e-3034.44E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana GN=RDUF1 PE=1 SV=1[more]
RING1_GOSHI1.9e-2847.79E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1[more]
BLAST of Cp4.1LG10g10700 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0T9_CUCSA5.3e-15083.01Uncharacterized protein OS=Cucumis sativus GN=Csa_4G419610 PE=4 SV=1[more]
A0A061F2J2_THECC6.5e-10864.78RING-H2 finger C1A, putative OS=Theobroma cacao GN=TCM_023780 PE=4 SV=1[more]
B9HDT7_POPTR2.3e-10563.81Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0006s03070g PE=4 SV=2[more]
V4SSL7_9ROSI9.8e-10463.38Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012279mg PE=4 SV=1[more]
A0A067EQC1_CITSI2.8e-10363.06Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021656mg PE=4 SV=1[more]
BLAST of Cp4.1LG10g10700 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G40830.21.2e-8454.74 RING-H2 finger C1A[more]
AT3G56580.22.7e-7651.26 RING/U-box superfamily protein[more]
AT5G59550.14.7e-3334.55 zinc finger (C3HC4-type RING finger) family protein[more]
AT3G19950.14.0e-3233.02 RING/U-box superfamily protein[more]
AT3G46620.16.8e-3234.44 zinc finger (C3HC4-type RING finger) family protein[more]
BLAST of Cp4.1LG10g10700 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449453133|ref|XP_004144313.1|7.6e-15083.01PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis sativus][more]
gi|659111475|ref|XP_008455755.1|3.5e-14781.70PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo][more]
gi|590633800|ref|XP_007028207.1|9.4e-10864.78RING-H2 finger C1A, putative [Theobroma cacao][more]
gi|566174207|ref|XP_002308856.2|3.3e-10563.81zinc finger family protein [Populus trichocarpa][more]
gi|1000954817|ref|XP_015578080.1|4.4e-10564.01PREDICTED: E3 ubiquitin-protein ligase RING1-like [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process GO:0000209 protein polyubiquitination
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0016874 ligase activity
molecular_function GO:0061630 ubiquitin protein ligase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g10700.1Cp4.1LG10g10700.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 177..219
score: 1.0
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 178..218
score: 2.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 178..219
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 174..222
score: 1.3
NoneNo IPR availablePANTHERPTHR22763RING ZINC FINGER PROTEINcoord: 5..306
score: 2.1E
NoneNo IPR availablePANTHERPTHR22763:SF44E3 UBIQUITIN LIGASEcoord: 5..306
score: 2.1E
NoneNo IPR availablePFAMPF14369zinc_ribbon_9coord: 6..37
score: 1.1
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 158..225
score: 3.98

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG10g10700Cucsa.358650Cucumber (Gy14) v1cgycpeB0933
Cp4.1LG10g10700CmaCh03G001640Cucurbita maxima (Rimu)cmacpeB656
Cp4.1LG10g10700CmaCh07G011120Cucurbita maxima (Rimu)cmacpeB867
Cp4.1LG10g10700CmoCh07G011600Cucurbita moschata (Rifu)cmocpeB807
Cp4.1LG10g10700CmoCh03G001930Cucurbita moschata (Rifu)cmocpeB606
Cp4.1LG10g10700Cla012075Watermelon (97103) v1cpewmB088
Cp4.1LG10g10700Csa4G419610Cucumber (Chinese Long) v2cpecuB072
Cp4.1LG10g10700MELO3C019142Melon (DHL92) v3.5.1cpemeB073
Cp4.1LG10g10700ClCG04G005960Watermelon (Charleston Gray)cpewcgB081
Cp4.1LG10g10700CSPI04G18810Wild cucumber (PI 183967)cpecpiB068
Cp4.1LG10g10700Lsi01G017480Bottle gourd (USVL1VR-Ls)cpelsiB048
Cp4.1LG10g10700MELO3C019142.2Melon (DHL92) v3.6.1cpemedB093
Cp4.1LG10g10700CsaV3_4G029180Cucumber (Chinese Long) v3cpecucB0078
Cp4.1LG10g10700Bhi03G002081Wax gourdcpewgoB0102
Cp4.1LG10g10700CsGy4G017870Cucumber (Gy14) v2cgybcpeB466
Cp4.1LG10g10700Carg26127Silver-seed gourdcarcpeB1338
Cp4.1LG10g10700Carg13324Silver-seed gourdcarcpeB0827
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG10g10700Cp4.1LG19g02440Cucurbita pepo (Zucchini)cpecpeB077
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG10g10700Cucurbita maxima (Rimu)cmacpeB255
Cp4.1LG10g10700Cucurbita moschata (Rifu)cmocpeB219
Cp4.1LG10g10700Cucumber (Chinese Long) v2cpecuB066
Cp4.1LG10g10700Cucumber (Gy14) v2cgybcpeB293
Cp4.1LG10g10700Melon (DHL92) v3.6.1cpemedB074
Cp4.1LG10g10700Silver-seed gourdcarcpeB0349
Cp4.1LG10g10700Cucumber (Chinese Long) v3cpecucB0072