CsaV3_4G010420 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G010420
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	non-specific lipid-transfer protein 2-like
Location	chr4 : 8261522 .. 8261809 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAAAGTTCAAGGCACAGGCCTTTGCCTTCTTGTGGTGGTGGCAATATTTCTCTCCAGTGTTCGTCTGGGTGAGGCGGTGAGTTGCAATCCGACGGAGCTGAGCCCTTGTGTGAGTGCAATCACATCATCAACTGCACCGACGGCTGCTTGCTGCCAGAAGTTGAGGCAACAAGAACCATGCTATTGTGGGTACCTAAAAGATCCAAAGTACAAAGCTTATGCAGAATCTCCTCGTGTTCGGGCCATTGCTTCCCAGTGTCGTGTCCCTATCCCTAAGTGTTAG

mRNA sequence

ATGATGAAAGTTCAAGGCACAGGCCTTTGCCTTCTTGTGGTGGTGGCAATATTTCTCTCCAGTGTTCGTCTGGGTGAGGCGGTGAGTTGCAATCCGACGGAGCTGAGCCCTTGTGTGAGTGCAATCACATCATCAACTGCACCGACGGCTGCTTGCTGCCAGAAGTTGAGGCAACAAGAACCATGCTATTGTGGGTACCTAAAAGATCCAAAGTACAAAGCTTATGCAGAATCTCCTCGTGTTCGGGCCATTGCTTCCCAGTGTCGTGTCCCTATCCCTAAGTGTTAG

Coding sequence (CDS)

ATGATGAAAGTTCAAGGCACAGGCCTTTGCCTTCTTGTGGTGGTGGCAATATTTCTCTCCAGTGTTCGTCTGGGTGAGGCGGTGAGTTGCAATCCGACGGAGCTGAGCCCTTGTGTGAGTGCAATCACATCATCAACTGCACCGACGGCTGCTTGCTGCCAGAAGTTGAGGCAACAAGAACCATGCTATTGTGGGTACCTAAAAGATCCAAAGTACAAAGCTTATGCAGAATCTCCTCGTGTTCGGGCCATTGCTTCCCAGTGTCGTGTCCCTATCCCTAAGTGTTAG

Protein sequence

MMKVQGTGLCLLVVVAIFLSSVRLGEAVSCNPTELSPCVSAITSSTAPTAACCQKLRQQEPCYCGYLKDPKYKAYAESPRVRAIASQCRVPIPKC

Homology

[Close]

BLAST of CsaV3_4G010420 vs. NCBI nr
Match: KGN53813.1 (hypothetical protein Csa_4G141210 [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 8.2e-30
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MMKVQGTGLCLLVVVAIFLSSVRLGEAVSCNPTELSPCVSAITSSTAPTAACCQKLRQQE 60
          MMKVQGTGLCLLVVVAIFLSSVRLGEAVSCNPTELSPCVSAITSSTAPTAACCQKLRQQE
Sbjct: 1  MMKVQGTGLCLLVVVAIFLSSVRLGEAVSCNPTELSPCVSAITSSTAPTAACCQKLRQQE 60

Query: 61 PCYCGYLXXXXXXXXXXXXXXXXXXXXXXVPIPKC 96
          PCYCGYLXXXXXXXXXXXXXXXXXXXXXXVPIPKC
Sbjct: 61 PCYCGYLXXXXXXXXXXXXXXXXXXXXXXVPIPKC 95

[Close]

BLAST of CsaV3_4G010420 vs. NCBI nr
Match: XP_021663526.1 (non-specific lipid-transfer protein 2-like [Hevea brasiliensis])

HSP 1 Score: 81.3 bits (199), Expect = 2.0e-12
Identity = 43/97 (44.33%), Postives = 57/97 (58.76%), Query Frame = 0


Query: 1  MMKVQGTGLCLLVVVA--IFLSSVRLGEAVSCNPTELSPCVSAITSSTAPTAACCQKLRQ 60
          M KV G+ L ++V VA  + L+ VRL  AV+CNP +LS C+ AI+SSTAP++ CC KLR+
Sbjct: 1  MKKVSGSSLWMVVAVAALMLLTEVRLSNAVTCNPVQLSSCLPAISSSTAPSSTCCSKLRE 60

Query: 61 QEPCYCGYLXXXXXXXXXXXXXXXXXXXXXXVPIPKC 96
          Q+PC CGYL                      VP+P C
Sbjct: 61 QKPCLCGYLKNPNLKQYVNSPGARKVANACGVPLPNC 97

[Close]

BLAST of CsaV3_4G010420 vs. NCBI nr
Match: OMO80297.1 (hypothetical protein CCACVL1_13085 [Corchorus capsularis])

HSP 1 Score: 79.7 bits (195), Expect = 5.9e-12
Identity = 40/97 (41.24%), Postives = 54/97 (55.67%), Query Frame = 0


Query: 1  MMKVQGTGLCLL--VVVAIFLSSVRLGEAVSCNPTELSPCVSAITSSTAPTAACCQKLRQ 60
          M +V    LC++  + V +FL   R  EAV+CNP  LSPCV+AITS + P++ACC KL++
Sbjct: 1  MKRVSCVALCMVAALAVVVFLGETRTAEAVTCNPVALSPCVAAITSGSTPSSACCGKLKE 60

Query: 61 QEPCYCGYLXXXXXXXXXXXXXXXXXXXXXXVPIPKC 96
          Q+PC+C YL                      VP PKC
Sbjct: 61 QQPCFCNYLKNPSLRQYVNSPNAKKVASTCGVPYPKC 97

[Close]

BLAST of CsaV3_4G010420 vs. NCBI nr
Match: XP_007217198.1 (non-specific lipid-transfer protein 2 [Prunus persica] >ONI17236.1 hypothetical protein PRUPE_3G147800 [Prunus persica])

HSP 1 Score: 79.3 bits (194), Expect = 7.7e-12
Identity = 41/98 (41.84%), Postives = 56/98 (57.14%), Query Frame = 0


Query: 1  MMKV--QGTGLCLLVVVAIFLS-SVRLGEAVSCNPTELSPCVSAITSSTAPTAACCQKLR 60
          MMK+   G  LC++V+VA+ LS   R+ EAV+C+P +LSPC+  I S + P+  CCQKLR
Sbjct: 1  MMKLSYSGVALCVVVMVAVMLSEEARMAEAVTCSPVQLSPCLGPINSGSPPSTTCCQKLR 60

Query: 61 QQEPCYCGYLXXXXXXXXXXXXXXXXXXXXXXVPIPKC 96
          +Q PC CGYL                      VP+P+C
Sbjct: 61 EQRPCLCGYLKNPSLRQYVNSPNARKLASNCGVPVPQC 98

[Close]

BLAST of CsaV3_4G010420 vs. NCBI nr
Match: OAY57105.1 (hypothetical protein MANES_02G070800 [Manihot esculenta])

HSP 1 Score: 79.0 bits (193), Expect = 1.0e-11
Identity = 39/69 (56.52%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 1  MMKVQGTGLCLLVVVAI--FLSSVRLGEAVSCNPTELSPCVSAITSSTAPTAACCQKLRQ 60
          M KV G+ L L++ VA+   L  VRL  AV+CNP +LS C+ AI+SSTAP++ CC KLR+
Sbjct: 1  MKKVSGSSLWLVLAVAVLMLLGEVRLSSAVACNPVQLSSCLPAISSSTAPSSTCCSKLRE 60

Query: 61 QEPCYCGYL 68
          Q+PC CGYL
Sbjct: 61 QKPCMCGYL 69

[Close]

BLAST of CsaV3_4G010420 vs. TAIR10
Match: AT1G48750.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 54.3 bits (129), Expect = 4.8e-08
Identity = 30/95 (31.58%), Postives = 45/95 (47.37%), Query Frame = 0


Query: 1  MMKVQGTGLCLLVVVAIFLSSVRLGEAVSCNPTELSPCVSAITSSTAPTAACCQKLRQQE 60
          M+KV    + L +  AI L +V + E V+C+P +L+ C +A+        ACC KLR+Q+
Sbjct: 1  MVKVMWVSV-LALAAAILLLTVPVAEGVTCSPMQLASCAAAMXXXXXXXXACCTKLREQQ 60

Query: 61 PCYCGYLXXXXXXXXXXXXXXXXXXXXXXVPIPKC 96
          PC CGY+                      +P P C
Sbjct: 61 PCLCGYMRNPTLRQYVSSPNARKVSNSCKIPSPSC 94

[Close]

BLAST of CsaV3_4G010420 vs. TAIR10
Match: AT5G38195.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 52.0 bits (123), Expect = 2.4e-07
Identity = 29/90 (32.22%), Postives = 43/90 (47.78%), Query Frame = 0


Query: 9  LCLLVVVAIFLSS---VRLGEAVSCNPTELSPCVSAITSSTAPTAACCQKLRQQEPCYCG 68
          L ++ VV + +SS   ++   + SC PTEL PC+ A+T+   PT  CC KL +Q+ C CG
Sbjct: 6  LMVITVVIVVMSSPILIKSEVSSSCIPTELMPCLPAMTTGGQPTKDCCDKLIEQKECLCG 65

Query: 69 YLXXXXXXXXXXXXXXXXXXXXXXVPIPKC 96
          Y+                      +P P C
Sbjct: 66 YINNPLYSTFVSSPVARKVLEVCNIPYPSC 95

[Close]

BLAST of CsaV3_4G010420 vs. TAIR10
Match: AT1G43667.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 47.8 bits (112), Expect = 4.5e-06
Identity = 17/40 (42.50%), Postives = 27/40 (67.50%), Query Frame = 0


Query: 28 VSCNPTELSPCVSAITSSTAPTAACCQKLRQQEPCYCGYL 68
          V+C  TEL PC+ ++   + P+  CC+KL++Q  C+C YL
Sbjct: 33 VACTVTELQPCLPSVIDGSQPSTQCCEKLKEQNSCFCDYL 72

[Close]

BLAST of CsaV3_4G010420 vs. TAIR10
Match: AT1G66850.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 46.6 bits (109), Expect = 1.0e-05
Identity = 18/39 (46.15%), Postives = 27/39 (69.23%), Query Frame = 0


Query: 28 VSCNPTELSPCVSAITSSTAPTAACCQKLRQQEPCYCGY 67
          V+C+  +L PC++AIT    P+ ACC KL +Q+ C CG+
Sbjct: 35 VTCDARQLQPCLAAITGGGQPSGACCAKLTEQQSCLCGF 73

[Close]

BLAST of CsaV3_4G010420 vs. TAIR10
Match: AT2G14846.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 46.2 bits (108), Expect = 1.3e-05
Identity = 31/97 (31.96%), Postives = 41/97 (42.27%), Query Frame = 0


Query: 9  LCLLVVVAIFLSS----------VRLGEAVSCNPTELSPCVSAITSSTAPTAACCQKLRQ 68
          L  LV +A  LSS          V   E V C  T+L  C+ A+ + + P+  CC KL++
Sbjct: 3  LITLVFIAFVLSSLAPTKAVVVRVEEEEKVVCIVTDLRVCLPAVEAGSQPSVQCCGKLKE 62

Query: 69 QEPCYCGYLXXXXXXXXXXXXXXXXXXXXXXVPIPKC 96
          Q  C CGYL                      +PIPKC
Sbjct: 63 QLSCLCGYLKIPSFTQYVSSGKAQKVLTACAIPIPKC 99

[Close]

BLAST of CsaV3_4G010420 vs. Swiss-Prot
Match: sp|Q43681|NLTP_VIGUN (Probable non-specific lipid-transfer protein AKCS9 OS=Vigna unguiculata OX=3917 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.1e-09
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 0


Query: 24 LGEAVSCNPTELSPCVSAITSSTAPTAACCQKLRQQEPCYCGY 67
          + EAV+CNPTELS CV AIT  + P++ CC KL+ QEPC C Y
Sbjct: 28 VAEAVTCNPTELSSCVPAITGGSKPSSTCCSKLKVQEPCLCNY 70

[Close]

BLAST of CsaV3_4G010420 vs. Swiss-Prot
Match: sp|P86809|NLTP2_APIGA (Non-specific lipid-transfer protein 2 OS=Apium graveolens var. rapaceum OX=278110 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-08
Identity = 23/39 (58.97%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 29 SCNPTELSPCVSAITSSTAPTAACCQKLRQQEPCYCGYL 68
          +C+  +LSPC++AIT +T P+AACC KL++Q+PC CGYL
Sbjct: 2  TCSAVQLSPCLAAITKNTPPSAACCNKLKEQKPCLCGYL 40

[Close]

BLAST of CsaV3_4G010420 vs. Swiss-Prot
Match: sp|P82353|NLTP2_PRUAR (Non-specific lipid-transfer protein 2 OS=Prunus armeniaca OX=36596 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.8e-08
Identity = 26/68 (38.24%), Postives = 33/68 (48.53%), Query Frame = 0


Query: 28 VSCNPTELSPCVSAITSSTAPTAACCQKLRQQEPCYCGYLXXXXXXXXXXXXXXXXXXXX 87
          V+C+P +LSPC+  I S       CCQKLR+Q PC CGYL                    
Sbjct: 1  VTCSPVQLSPCLGPINSGAPSPTTCCQKLREQRPCLCGYLKNPSLRQYVNSPNARKLASN 60

Query: 88 XXVPIPKC 96
            VP+P+C
Sbjct: 61 CGVPVPQC 68

[Close]

BLAST of CsaV3_4G010420 vs. TrEMBL
Match: tr|A0A0A0KW80|A0A0A0KW80_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G141210 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 5.4e-30
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MMKVQGTGLCLLVVVAIFLSSVRLGEAVSCNPTELSPCVSAITSSTAPTAACCQKLRQQE 60
          MMKVQGTGLCLLVVVAIFLSSVRLGEAVSCNPTELSPCVSAITSSTAPTAACCQKLRQQE
Sbjct: 1  MMKVQGTGLCLLVVVAIFLSSVRLGEAVSCNPTELSPCVSAITSSTAPTAACCQKLRQQE 60

Query: 61 PCYCGYLXXXXXXXXXXXXXXXXXXXXXXVPIPKC 96
          PCYCGYLXXXXXXXXXXXXXXXXXXXXXXVPIPKC
Sbjct: 61 PCYCGYLXXXXXXXXXXXXXXXXXXXXXXVPIPKC 95

[Close]

BLAST of CsaV3_4G010420 vs. TrEMBL
Match: tr|A0A1R3ICI1|A0A1R3ICI1_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_13085 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.9e-12
Identity = 40/97 (41.24%), Postives = 54/97 (55.67%), Query Frame = 0


Query: 1  MMKVQGTGLCLL--VVVAIFLSSVRLGEAVSCNPTELSPCVSAITSSTAPTAACCQKLRQ 60
          M +V    LC++  + V +FL   R  EAV+CNP  LSPCV+AITS + P++ACC KL++
Sbjct: 1  MKRVSCVALCMVAALAVVVFLGETRTAEAVTCNPVALSPCVAAITSGSTPSSACCGKLKE 60

Query: 61 QEPCYCGYLXXXXXXXXXXXXXXXXXXXXXXVPIPKC 96
          Q+PC+C YL                      VP PKC
Sbjct: 61 QQPCFCNYLKNPSLRQYVNSPNAKKVASTCGVPYPKC 97

[Close]

BLAST of CsaV3_4G010420 vs. TrEMBL
Match: tr|M5WX74|M5WX74_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G147800 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 5.1e-12
Identity = 41/98 (41.84%), Postives = 56/98 (57.14%), Query Frame = 0


Query: 1  MMKV--QGTGLCLLVVVAIFLS-SVRLGEAVSCNPTELSPCVSAITSSTAPTAACCQKLR 60
          MMK+   G  LC++V+VA+ LS   R+ EAV+C+P +LSPC+  I S + P+  CCQKLR
Sbjct: 1  MMKLSYSGVALCVVVMVAVMLSEEARMAEAVTCSPVQLSPCLGPINSGSPPSTTCCQKLR 60

Query: 61 QQEPCYCGYLXXXXXXXXXXXXXXXXXXXXXXVPIPKC 96
          +Q PC CGYL                      VP+P+C
Sbjct: 61 EQRPCLCGYLKNPSLRQYVNSPNARKLASNCGVPVPQC 98

[Close]

BLAST of CsaV3_4G010420 vs. TrEMBL
Match: tr|A0A2C9WE84|A0A2C9WE84_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G070800 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.7e-12
Identity = 39/69 (56.52%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 1  MMKVQGTGLCLLVVVAI--FLSSVRLGEAVSCNPTELSPCVSAITSSTAPTAACCQKLRQ 60
          M KV G+ L L++ VA+   L  VRL  AV+CNP +LS C+ AI+SSTAP++ CC KLR+
Sbjct: 1  MKKVSGSSLWLVLAVAVLMLLGEVRLSSAVACNPVQLSSCLPAISSSTAPSSTCCSKLRE 60

Query: 61 QEPCYCGYL 68
          Q+PC CGYL
Sbjct: 61 QKPCMCGYL 69

[Close]

BLAST of CsaV3_4G010420 vs. TrEMBL
Match: tr|S4TID2|S4TID2_GOSHI (Lipid transfer protein OS=Gossypium hirsutum OX=3635 GN=LTP9 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.7e-12
Identity = 41/96 (42.71%), Postives = 54/96 (56.25%), Query Frame = 0


Query: 1  MMKVQGTGLCLLVV-VAIFLSSVRLGEAVSCNPTELSPCVSAITSSTAPTAACCQKLRQQ 60
          M +V    LC++ + V +F    R+ EAV+CNPTELSPC+SA TSS+ P+AACC KL+ Q
Sbjct: 1  MKRVSFVALCVVALSVVLFSGESRMAEAVTCNPTELSPCLSAFTSSSPPSAACCSKLKAQ 60

Query: 61 EPCYCGYLXXXXXXXXXXXXXXXXXXXXXXVPIPKC 96
          +PC CGY+                      V  PKC
Sbjct: 61 KPCLCGYIKNPSLKQYVNSPNAKNVASTCGVTYPKC 96

The following BLAST results are available for this feature:

BLAST of CsaV3_4G010420 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53813.1	8.2e-30	100.00	hypothetical protein Csa_4G141210 [Cucumis sativus]	[more]
XP_021663526.1	2.0e-12	44.33	non-specific lipid-transfer protein 2-like [Hevea brasiliensis]	[more]
OMO80297.1	5.9e-12	41.24	hypothetical protein CCACVL1_13085 [Corchorus capsularis]	[more]
XP_007217198.1	7.7e-12	41.84	non-specific lipid-transfer protein 2 [Prunus persica] >ONI17236.1 hypothetical ...	[more]
OAY57105.1	1.0e-11	56.52	hypothetical protein MANES_02G070800 [Manihot esculenta]	[more]

BLAST of CsaV3_4G010420 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G48750.1	4.8e-08	31.58	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT5G38195.1	2.4e-07	32.22	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT1G43667.1	4.5e-06	42.50	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT1G66850.1	1.0e-05	46.15	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT2G14846.1	1.3e-05	31.96	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]

BLAST of CsaV3_4G010420 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q43681\|NLTP_VIGUN	7.1e-09	60.47	Probable non-specific lipid-transfer protein AKCS9 OS=Vigna unguiculata OX=3917 ...	[more]
sp\|P86809\|NLTP2_APIGA	2.7e-08	58.97	Non-specific lipid-transfer protein 2 OS=Apium graveolens var. rapaceum OX=27811...	[more]
sp\|P82353\|NLTP2_PRUAR	7.8e-08	38.24	Non-specific lipid-transfer protein 2 OS=Prunus armeniaca OX=36596 PE=1 SV=1	[more]

BLAST of CsaV3_4G010420 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KW80\|A0A0A0KW80_CUCSA	5.4e-30	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G141210 PE=4 SV=1	[more]
tr\|A0A1R3ICI1\|A0A1R3ICI1_COCAP	3.9e-12	41.24	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_13085 PE=4 ...	[more]
tr\|M5WX74\|M5WX74_PRUPE	5.1e-12	41.84	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G147800 PE=4 SV=1	[more]
tr\|A0A2C9WE84\|A0A2C9WE84_MANES	6.7e-12	56.52	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G070800 PE=4 SV=...	[more]
tr\|S4TID2\|S4TID2_GOSHI	8.7e-12	42.71	Lipid transfer protein OS=Gossypium hirsutum OX=3635 GN=LTP9 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006869	lipid transport

Vocabulary: **INTERPRO**
Term	Definition
IPR036312	Bifun_inhib/LTP/seed_sf
IPR033872	nsLTP2
IPR016140	Bifunc_inhib/LTP/seed_store

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006869	lipid transport
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G010420.1	CsaV3_4G010420.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 30..95 e-value: 5.2E-4 score: 29.3
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 21..93 e-value: 4.0E-6 score: 26.8
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 29..95 e-value: 1.3E-22 score: 81.8
None	No IPR available	PANTHER	PTHR33214:SF19	BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN-LIKE PROTEIN	coord: 2..95
IPR033872	Non-specific lipid-transfer protein type 2	PANTHER	PTHR33214	FAMILY NOT NAMED	coord: 2..95
IPR033872	Non-specific lipid-transfer protein type 2	CDD	cd01959	nsLTP2	coord: 30..95 e-value: 1.57569E-24 score: 88.1394
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 29..95

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G010420	CSPI04G10260	Wild cucumber (PI 183967)	cpicucB213
CsaV3_4G010420	CmaCh14G011660	Cucurbita maxima (Rimu)	cmacucB0300
CsaV3_4G010420	CmaCh01G004080	Cucurbita maxima (Rimu)	cmacucB0568
CsaV3_4G010420	CmoCh14G011930	Cucurbita moschata (Rifu)	cmocucB0293
CsaV3_4G010420	Cp4.1LG02g13790	Cucurbita pepo (Zucchini)	cpecucB0704
CsaV3_4G010420	Cp4.1LG03g15250	Cucurbita pepo (Zucchini)	cpecucB0769
CsaV3_4G010420	CsGy4G009890	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G010420	Cla010770	Watermelon (97103) v1	cucwmB320
CsaV3_4G010420	ClCG07G016410	Watermelon (Charleston Gray)	cucwcgB347
CsaV3_4G010420	Lsi01G019120	Bottle gourd (USVL1VR-Ls)	cuclsiB281
CsaV3_4G010420	MELO3C010391.2	Melon (DHL92) v3.6.1	cucmedB310
CsaV3_4G010420	Bhi01G001754	Wax gourd	cucwgoB374
CsaV3_4G010420	Bhi01G001684	Wax gourd	cucwgoB378

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G010420	Bottle gourd (USVL1VR-Ls)	cuclsiB332
CsaV3_4G010420	Melon (DHL92) v3.5.1	cucmeB318
CsaV3_4G010420	Watermelon (97103) v2	cucwmbB334