CsGy4G009890 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G009890
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Non-specific lipid-transfer protein 2
Location	Chr4 : 8384179 .. 8384466 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAAAGTTCAAGGTACAGGCCTTTGCCTTCTTGTGGTGGCGGCGATATTTCTCTCCAGTGTTCGTCTGGGTGAGGCGGTGAGTTGCAATCCGACGGAGCTGAGCCCTTGTGTGAGTGCAATCACATCATCAACTGCACCGACGGCTGCTTGCTGCCAGAAGTTGAGGCAACAAGAACCATGCTATTGTGGGTACCTAAAAGATCCAAAGTACAAAGCTTATGCAGAATCTCCTCGTGTTCGGGCTATTGCTTCCCAGTGTCGTGTCCCTATCCCTAAGTGTTAG

mRNA sequence

ATGATGAAAGTTCAAGGTACAGGCCTTTGCCTTCTTGTGGTGGCGGCGATATTTCTCTCCAGTGTTCGTCTGGGTGAGGCGGTGAGTTGCAATCCGACGGAGCTGAGCCCTTGTGTGAGTGCAATCACATCATCAACTGCACCGACGGCTGCTTGCTGCCAGAAGTTGAGGCAACAAGAACCATGCTATTGTGGGTACCTAAAAGATCCAAAGTACAAAGCTTATGCAGAATCTCCTCGTGTTCGGGCTATTGCTTCCCAGTGTCGTGTCCCTATCCCTAAGTGTTAG

Coding sequence (CDS)

ATGATGAAAGTTCAAGGTACAGGCCTTTGCCTTCTTGTGGTGGCGGCGATATTTCTCTCCAGTGTTCGTCTGGGTGAGGCGGTGAGTTGCAATCCGACGGAGCTGAGCCCTTGTGTGAGTGCAATCACATCATCAACTGCACCGACGGCTGCTTGCTGCCAGAAGTTGAGGCAACAAGAACCATGCTATTGTGGGTACCTAAAAGATCCAAAGTACAAAGCTTATGCAGAATCTCCTCGTGTTCGGGCTATTGCTTCCCAGTGTCGTGTCCCTATCCCTAAGTGTTAG

Protein sequence

MMKVQGTGLCLLVVAAIFLSSVRLGEAVSCNPTELSPCVSAITSSTAPTAACCQKLRQQEPCYCGYLKDPKYKAYAESPRVRAIASQCRVPIPKC

Homology

[Close]

BLAST of CsGy4G009890 vs. NCBI nr
Match: KGN53813.1 (hypothetical protein Csa_4G141210 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 2.4e-29
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MMKVQGTGLCLLVVAAIFLSSVRLGEAVSCNPTELSPCVSAITSSTAPTAACCQKLRQQE 60
          MMKVQGTGLCLLVV AIFLSSVRLGEAVSCNPTELSPCVSAITSSTAPTAACCQKLRQQE
Sbjct: 1  MMKVQGTGLCLLVVVAIFLSSVRLGEAVSCNPTELSPCVSAITSSTAPTAACCQKLRQQE 60

Query: 61 PCYCGYLXXXXXXXXXXXXXXXXXXXXXXVPIPKC 96
          PCYCGYLXXXXXXXXXXXXXXXXXXXXXXVPIPKC
Sbjct: 61 PCYCGYLXXXXXXXXXXXXXXXXXXXXXXVPIPKC 95

[Close]

BLAST of CsGy4G009890 vs. NCBI nr
Match: XP_021663526.1 (non-specific lipid-transfer protein 2-like [Hevea brasiliensis])

HSP 1 Score: 79.7 bits (195), Expect = 5.8e-12
Identity = 42/97 (43.30%), Postives = 56/97 (57.73%), Query Frame = 0


Query: 1  MMKVQGTGLCLLVVAA--IFLSSVRLGEAVSCNPTELSPCVSAITSSTAPTAACCQKLRQ 60
          M KV G+ L ++V  A  + L+ VRL  AV+CNP +LS C+ AI+SSTAP++ CC KLR+
Sbjct: 1  MKKVSGSSLWMVVAVAALMLLTEVRLSNAVTCNPVQLSSCLPAISSSTAPSSTCCSKLRE 60

Query: 61 QEPCYCGYLXXXXXXXXXXXXXXXXXXXXXXVPIPKC 96
          Q+PC CGYL                      VP+P C
Sbjct: 61 QKPCLCGYLKNPNLKQYVNSPGARKVANACGVPLPNC 97

[Close]

BLAST of CsGy4G009890 vs. NCBI nr
Match: OMO80297.1 (hypothetical protein CCACVL1_13085 [Corchorus capsularis])

HSP 1 Score: 79.0 bits (193), Expect = 1.0e-11
Identity = 40/97 (41.24%), Postives = 53/97 (54.64%), Query Frame = 0


Query: 1  MMKVQGTGLCLLVVAA--IFLSSVRLGEAVSCNPTELSPCVSAITSSTAPTAACCQKLRQ 60
          M +V    LC++   A  +FL   R  EAV+CNP  LSPCV+AITS + P++ACC KL++
Sbjct: 1  MKRVSCVALCMVAALAVVVFLGETRTAEAVTCNPVALSPCVAAITSGSTPSSACCGKLKE 60

Query: 61 QEPCYCGYLXXXXXXXXXXXXXXXXXXXXXXVPIPKC 96
          Q+PC+C YL                      VP PKC
Sbjct: 61 QQPCFCNYLKNPSLRQYVNSPNAKKVASTCGVPYPKC 97

[Close]

BLAST of CsGy4G009890 vs. NCBI nr
Match: XP_006430725.1 (non-specific lipid-transfer protein 2 [Citrus clementina] >ESR43965.1 hypothetical protein CICLE_v10013188mg [Citrus clementina] >KDO63207.1 hypothetical protein CISIN_1g034237mg [Citrus sinensis])

HSP 1 Score: 78.6 bits (192), Expect = 1.3e-11
Identity = 38/85 (44.71%), Postives = 50/85 (58.82%), Query Frame = 0


Query: 11  LLVVAAIFLSSVRLGEAVSCNPTELSPCVSAITSSTAPTAACCQKLRQQEPCYCGYLXXX 70
           +++VA   LS V + EAV+C+PTELSPC++A+TSS  P+ ACC KLRQQ PC CGYL   
Sbjct: 16  VVLVAVAALSQVHVAEAVTCSPTELSPCLAALTSSAPPSGACCNKLRQQRPCLCGYLRNP 75

Query: 71  XXXXXXXXXXXXXXXXXXXVPIPKC 96
                              +P P+C
Sbjct: 76  NLRQYVNSPNAKRIVATCGIPYPRC 100

[Close]

BLAST of CsGy4G009890 vs. NCBI nr
Match: XP_008444080.1 (PREDICTED: non-specific lipid-transfer protein 2-like [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 1.7e-11
Identity = 40/96 (41.67%), Postives = 55/96 (57.29%), Query Frame = 0


Query: 1  MMKVQGTGLCLLVVAAI-FLSSVRLGEAVSCNPTELSPCVSAITSSTAPTAACCQKLRQQ 60
          M  ++ T L LLVVA +  L+  R+ EAV+CN  +LSPC+ AITS+  P+  CC KLR+Q
Sbjct: 1  MKNLRFTSLHLLVVAIVALLTGARVAEAVTCNTMQLSPCIGAITSTAPPSTTCCSKLREQ 60

Query: 61 EPCYCGYLXXXXXXXXXXXXXXXXXXXXXXVPIPKC 96
          +PC+CGY+                      VP+PKC
Sbjct: 61 QPCFCGYMKNPSLGGYVKSARAKAIISTCGVPLPKC 96

[Close]

BLAST of CsGy4G009890 vs. TAIR10
Match: AT1G48750.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 55.8 bits (133), Expect = 1.6e-08
Identity = 31/95 (32.63%), Postives = 46/95 (48.42%), Query Frame = 0


Query: 1  MMKVQGTGLCLLVVAAIFLSSVRLGEAVSCNPTELSPCVSAITSSTAPTAACCQKLRQQE 60
          M+KV    + L + AAI L +V + E V+C+P +L+ C +A+        ACC KLR+Q+
Sbjct: 1  MVKVMWVSV-LALAAAILLLTVPVAEGVTCSPMQLASCAAAMXXXXXXXXACCTKLREQQ 60

Query: 61 PCYCGYLXXXXXXXXXXXXXXXXXXXXXXVPIPKC 96
          PC CGY+                      +P P C
Sbjct: 61 PCLCGYMRNPTLRQYVSSPNARKVSNSCKIPSPSC 94

[Close]

BLAST of CsGy4G009890 vs. TAIR10
Match: AT5G38195.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 50.4 bits (119), Expect = 6.9e-07
Identity = 28/90 (31.11%), Postives = 42/90 (46.67%), Query Frame = 0


Query: 9  LCLLVVAAIFLSS---VRLGEAVSCNPTELSPCVSAITSSTAPTAACCQKLRQQEPCYCG 68
          L ++ V  + +SS   ++   + SC PTEL PC+ A+T+   PT  CC KL +Q+ C CG
Sbjct: 6  LMVITVVIVVMSSPILIKSEVSSSCIPTELMPCLPAMTTGGQPTKDCCDKLIEQKECLCG 65

Query: 69 YLXXXXXXXXXXXXXXXXXXXXXXVPIPKC 96
          Y+                      +P P C
Sbjct: 66 YINNPLYSTFVSSPVARKVLEVCNIPYPSC 95

[Close]

BLAST of CsGy4G009890 vs. TAIR10
Match: AT1G43667.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 47.4 bits (111), Expect = 5.8e-06
Identity = 22/60 (36.67%), Postives = 37/60 (61.67%), Query Frame = 0


Query: 11 LLVVAAIFLSSVRLG---EAVSCNPTELSPCVSAITSSTAPTAACCQKLRQQEPCYCGYL 68
          L +VA I+   V++    + V+C  TEL PC+ ++   + P+  CC+KL++Q  C+C YL
Sbjct: 13 LSLVAPIYGGIVKVSWGEKKVACTVTELQPCLPSVIDGSQPSTQCCEKLKEQNSCFCDYL 72

[Close]

BLAST of CsGy4G009890 vs. TAIR10
Match: AT3G18280.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 47.4 bits (111), Expect = 5.8e-06
Identity = 28/96 (29.17%), Postives = 44/96 (45.83%), Query Frame = 0


Query: 1  MMKVQGTGLCLLVVAAIFLSSVR-LGEAVSCNPTELSPCVSAITSSTAPTAACCQKLRQQ 60
          M+ ++ T + L  +AA+ L  +    EAV+C+P +LS            +A CC KL++Q
Sbjct: 1  MVMIKTTMVSLFALAAVLLMILAPAAEAVTCSPMQLSXXXXXXXXXXXXSALCCAKLKEQ 60

Query: 61 EPCYCGYLXXXXXXXXXXXXXXXXXXXXXXVPIPKC 96
           PC CGY+                      +PIP+C
Sbjct: 61 RPCLCGYMRNPSLRRFVSTPNARKVSKSCKLPIPRC 96

[Close]

BLAST of CsGy4G009890 vs. TAIR10
Match: AT1G66850.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 46.6 bits (109), Expect = 9.9e-06
Identity = 18/39 (46.15%), Postives = 27/39 (69.23%), Query Frame = 0


Query: 28 VSCNPTELSPCVSAITSSTAPTAACCQKLRQQEPCYCGY 67
          V+C+  +L PC++AIT    P+ ACC KL +Q+ C CG+
Sbjct: 35 VTCDARQLQPCLAAITGGGQPSGACCAKLTEQQSCLCGF 73

[Close]

BLAST of CsGy4G009890 vs. Swiss-Prot
Match: sp|Q43681|NLTP_VIGUN (Probable non-specific lipid-transfer protein AKCS9 OS=Vigna unguiculata OX=3917 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.0e-09
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 0


Query: 24 LGEAVSCNPTELSPCVSAITSSTAPTAACCQKLRQQEPCYCGY 67
          + EAV+CNPTELS CV AIT  + P++ CC KL+ QEPC C Y
Sbjct: 28 VAEAVTCNPTELSSCVPAITGGSKPSSTCCSKLKVQEPCLCNY 70

[Close]

BLAST of CsGy4G009890 vs. Swiss-Prot
Match: sp|P86809|NLTP2_APIGA (Non-specific lipid-transfer protein 2 OS=Apium graveolens var. rapaceum OX=278110 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-08
Identity = 23/39 (58.97%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 29 SCNPTELSPCVSAITSSTAPTAACCQKLRQQEPCYCGYL 68
          +C+  +LSPC++AIT +T P+AACC KL++Q+PC CGYL
Sbjct: 2  TCSAVQLSPCLAAITKNTPPSAACCNKLKEQKPCLCGYL 40

[Close]

BLAST of CsGy4G009890 vs. Swiss-Prot
Match: sp|P82353|NLTP2_PRUAR (Non-specific lipid-transfer protein 2 OS=Prunus armeniaca OX=36596 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.0e-07
Identity = 26/68 (38.24%), Postives = 33/68 (48.53%), Query Frame = 0


Query: 28 VSCNPTELSPCVSAITSSTAPTAACCQKLRQQEPCYCGYLXXXXXXXXXXXXXXXXXXXX 87
          V+C+P +LSPC+  I S       CCQKLR+Q PC CGYL                    
Sbjct: 1  VTCSPVQLSPCLGPINSGAPSPTTCCQKLREQRPCLCGYLKNPSLRQYVNSPNARKLASN 60

Query: 88 XXVPIPKC 96
            VP+P+C
Sbjct: 61 CGVPVPQC 68

[Close]

BLAST of CsGy4G009890 vs. TrEMBL
Match: tr|A0A0A0KW80|A0A0A0KW80_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G141210 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.6e-29
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MMKVQGTGLCLLVVAAIFLSSVRLGEAVSCNPTELSPCVSAITSSTAPTAACCQKLRQQE 60
          MMKVQGTGLCLLVV AIFLSSVRLGEAVSCNPTELSPCVSAITSSTAPTAACCQKLRQQE
Sbjct: 1  MMKVQGTGLCLLVVVAIFLSSVRLGEAVSCNPTELSPCVSAITSSTAPTAACCQKLRQQE 60

Query: 61 PCYCGYLXXXXXXXXXXXXXXXXXXXXXXVPIPKC 96
          PCYCGYLXXXXXXXXXXXXXXXXXXXXXXVPIPKC
Sbjct: 61 PCYCGYLXXXXXXXXXXXXXXXXXXXXXXVPIPKC 95

[Close]

BLAST of CsGy4G009890 vs. TrEMBL
Match: tr|A0A1R3ICI1|A0A1R3ICI1_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_13085 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.6e-12
Identity = 40/97 (41.24%), Postives = 53/97 (54.64%), Query Frame = 0


Query: 1  MMKVQGTGLCLLVVAA--IFLSSVRLGEAVSCNPTELSPCVSAITSSTAPTAACCQKLRQ 60
          M +V    LC++   A  +FL   R  EAV+CNP  LSPCV+AITS + P++ACC KL++
Sbjct: 1  MKRVSCVALCMVAALAVVVFLGETRTAEAVTCNPVALSPCVAAITSGSTPSSACCGKLKE 60

Query: 61 QEPCYCGYLXXXXXXXXXXXXXXXXXXXXXXVPIPKC 96
          Q+PC+C YL                      VP PKC
Sbjct: 61 QQPCFCNYLKNPSLRQYVNSPNAKKVASTCGVPYPKC 97

[Close]

BLAST of CsGy4G009890 vs. TrEMBL
Match: tr|V4SY21|V4SY21_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013188mg PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.6e-12
Identity = 38/85 (44.71%), Postives = 50/85 (58.82%), Query Frame = 0


Query: 11  LLVVAAIFLSSVRLGEAVSCNPTELSPCVSAITSSTAPTAACCQKLRQQEPCYCGYLXXX 70
           +++VA   LS V + EAV+C+PTELSPC++A+TSS  P+ ACC KLRQQ PC CGYL   
Sbjct: 16  VVLVAVAALSQVHVAEAVTCSPTELSPCLAALTSSAPPSGACCNKLRQQRPCLCGYLRNP 75

Query: 71  XXXXXXXXXXXXXXXXXXXVPIPKC 96
                              +P P+C
Sbjct: 76  NLRQYVNSPNAKRIVATCGIPYPRC 100

[Close]

BLAST of CsGy4G009890 vs. TrEMBL
Match: tr|A0A067FIG1|A0A067FIG1_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034237mg PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.6e-12
Identity = 38/85 (44.71%), Postives = 50/85 (58.82%), Query Frame = 0


Query: 11  LLVVAAIFLSSVRLGEAVSCNPTELSPCVSAITSSTAPTAACCQKLRQQEPCYCGYLXXX 70
           +++VA   LS V + EAV+C+PTELSPC++A+TSS  P+ ACC KLRQQ PC CGYL   
Sbjct: 16  VVLVAVAALSQVHVAEAVTCSPTELSPCLAALTSSAPPSGACCNKLRQQRPCLCGYLRNP 75

Query: 71  XXXXXXXXXXXXXXXXXXXVPIPKC 96
                              +P P+C
Sbjct: 76  NLRQYVNSPNAKRIVATCGIPYPRC 100

[Close]

BLAST of CsGy4G009890 vs. TrEMBL
Match: tr|A0A1S3B931|A0A1S3B931_CUCME (non-specific lipid-transfer protein 2-like OS=Cucumis melo OX=3656 GN=LOC103487520 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-11
Identity = 40/96 (41.67%), Postives = 55/96 (57.29%), Query Frame = 0


Query: 1  MMKVQGTGLCLLVVAAI-FLSSVRLGEAVSCNPTELSPCVSAITSSTAPTAACCQKLRQQ 60
          M  ++ T L LLVVA +  L+  R+ EAV+CN  +LSPC+ AITS+  P+  CC KLR+Q
Sbjct: 1  MKNLRFTSLHLLVVAIVALLTGARVAEAVTCNTMQLSPCIGAITSTAPPSTTCCSKLREQ 60

Query: 61 EPCYCGYLXXXXXXXXXXXXXXXXXXXXXXVPIPKC 96
          +PC+CGY+                      VP+PKC
Sbjct: 61 QPCFCGYMKNPSLGGYVKSARAKAIISTCGVPLPKC 96

The following BLAST results are available for this feature:

BLAST of CsGy4G009890 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53813.1	2.4e-29	98.95	hypothetical protein Csa_4G141210 [Cucumis sativus]	[more]
XP_021663526.1	5.8e-12	43.30	non-specific lipid-transfer protein 2-like [Hevea brasiliensis]	[more]
OMO80297.1	1.0e-11	41.24	hypothetical protein CCACVL1_13085 [Corchorus capsularis]	[more]
XP_006430725.1	1.3e-11	44.71	non-specific lipid-transfer protein 2 [Citrus clementina] >ESR43965.1 hypothetic...	[more]
XP_008444080.1	1.7e-11	41.67	PREDICTED: non-specific lipid-transfer protein 2-like [Cucumis melo]	[more]

BLAST of CsGy4G009890 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G48750.1	1.6e-08	32.63	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT5G38195.1	6.9e-07	31.11	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT1G43667.1	5.8e-06	36.67	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT3G18280.1	5.8e-06	29.17	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT1G66850.1	9.9e-06	46.15	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]

BLAST of CsGy4G009890 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q43681\|NLTP_VIGUN	7.0e-09	60.47	Probable non-specific lipid-transfer protein AKCS9 OS=Vigna unguiculata OX=3917 ...	[more]
sp\|P86809\|NLTP2_APIGA	2.7e-08	58.97	Non-specific lipid-transfer protein 2 OS=Apium graveolens var. rapaceum OX=27811...	[more]
sp\|P82353\|NLTP2_PRUAR	1.0e-07	38.24	Non-specific lipid-transfer protein 2 OS=Prunus armeniaca OX=36596 PE=1 SV=1	[more]

BLAST of CsGy4G009890 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KW80\|A0A0A0KW80_CUCSA	1.6e-29	98.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G141210 PE=4 SV=1	[more]
tr\|A0A1R3ICI1\|A0A1R3ICI1_COCAP	6.6e-12	41.24	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_13085 PE=4 ...	[more]
tr\|V4SY21\|V4SY21_9ROSI	8.6e-12	44.71	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013188mg PE=4 ...	[more]
tr\|A0A067FIG1\|A0A067FIG1_CITSI	8.6e-12	44.71	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034237mg PE=4 SV=1	[more]
tr\|A0A1S3B931\|A0A1S3B931_CUCME	1.1e-11	41.67	non-specific lipid-transfer protein 2-like OS=Cucumis melo OX=3656 GN=LOC1034875...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006869	lipid transport

Vocabulary: **INTERPRO**
Term	Definition
IPR036312	Bifun_inhib/LTP/seed_sf
IPR033872	nsLTP2
IPR016140	Bifunc_inhib/LTP/seed_store

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006869	lipid transport
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G009890.1	CsGy4G009890.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 30..95 e-value: 5.2E-4 score: 29.3
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 21..93 e-value: 2.3E-6 score: 27.5
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 29..95 e-value: 1.3E-22 score: 81.8
None	No IPR available	PANTHER	PTHR33214:SF19	BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN-LIKE PROTEIN	coord: 8..95
IPR033872	Non-specific lipid-transfer protein type 2	PANTHER	PTHR33214	FAMILY NOT NAMED	coord: 8..95
IPR033872	Non-specific lipid-transfer protein type 2	CDD	cd01959	nsLTP2	coord: 30..95 e-value: 2.27008E-24 score: 87.7542
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 29..95

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G009890	Csa4G141210	Cucumber (Chinese Long) v2	cgybcuB165
CsGy4G009890	CSPI04G10280	Wild cucumber (PI 183967)	cgybcpiB168
CsGy4G009890	CmaCh01G004080	Cucurbita maxima (Rimu)	cgybcmaB517
CsGy4G009890	Lsi01G019120	Bottle gourd (USVL1VR-Ls)	cgyblsiB245
CsGy4G009890	Cp4.1LG03g15260	Cucurbita pepo (Zucchini)	cgybcpeB554
CsGy4G009890	Cp4.1LG02g13790	Cucurbita pepo (Zucchini)	cgybcpeB542
CsGy4G009890	CsaV3_4G010420	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G009890	Bhi01G001684	Wax gourd	cgybwgoB358

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G009890	Watermelon (97103) v2	cgybwmbB308
CsGy4G009890	Cucurbita maxima (Rimu)	cgybcmaB487
CsGy4G009890	Cucurbita moschata (Rifu)	cgybcmoB457
CsGy4G009890	Bottle gourd (USVL1VR-Ls)	cgyblsiB286
CsGy4G009890	Melon (DHL92) v3.5.1	cgybmeB272
CsGy4G009890	Melon (DHL92) v3.6.1	cgybmedB269
CsGy4G009890	Watermelon (Charleston Gray)	cgybwcgB306
CsGy4G009890	Watermelon (97103) v1	cgybwmB285