CsaV3_4G004910 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G004910
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionTranscription termination factor like
Locationchr4 : 3224285 .. 3225243 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACCCGTAGAGGCATTCAATCAACTGAAAAGCCTCGTTCCGTTTACAAATATCTTTCGGACCTCGGATTATCCGACACCCAAATTAAATCAGCCGTTCGAATCACACCCCAAATCGCGTTTTCCAGCATTGAGAAAACACTGAAGCCAAAGATCGAGTTCTTACAGAATCTTGGCTTTGTTGGCTCAGATTTGAGTAAGTTCATTTCCAGGCAATCTAAATTTTTTTCTTCTAGTTTGGAAAAGACATTGATGCCAATGTTGAGATTCTTAAGAATGTTTTGCCCAAGGGTACGTGTAATGACGATCTCCCGAAAGTTTTGCGGCGATGTTCTGATGTACTTACGAGATCCCCGTATAAAGTGTTGTCTGTAAATATCAATTACTTACGAAGTTGTGGGATTGTTGACTATCAACTCTCTACGTTATTGAAGCGACAACCTGCACTTTTTATTATGCATGAATCTCGACTTAAAGATTTTGTTTCAATGGCTGTAAAGGCTGGGTTTTCTCCCAACGGTACAATGTTTATTCATGGACTTCATTCTATCAGTAGTATAAGTAATGCAACTTATAAGAAGAAAGTGAAGCTGATTTGTAGTTTTGGAATAACTGAGAAAGAATGTATGAGAATGTTTAATTCGGCTCCTGTTTTGATGAGGACTTCCGTTGGTAAACTTGAGGTTGGTCTAGAATTCTTCATGAATGAGGCAAAAGTTAGCAAATCAGATATTGTTCGTAATCCTTTTTGTTTGATGCACGCAATGCATGGAAGGGTGCTCCCTCGTTATAGAGTTCTAGAGGTTCTGAAGTCGAAGAGGCTAACGAAGAAGCTCCCGAAGTTGATCGATTCATTGTGGATGCCTGATGAGGATTTCTTAGATAAATTCGTTCGTAGGTTTCCTGACAATATGAATGATTTGTTTGAGGCCTTTAGAGGTAATTCGAGGAGATAG

mRNA sequence

ATGGCAACCCGTAGAGGCATTCAATCAACTGAAAAGCCTCGTTCCGTTTACAAATATCTTTCGGACCTCGGATTATCCGACACCCAAATTAAATCAGCCGTTCGAATCACACCCCAAATCGCGTTTTCCAGCATTGAGAAAACACTGAAGCCAAAGATCGAGTTCTTACAGAATCTTGGCTTTGTTGGCTCAGATTTGAACATTGATGCCAATGTTGAGATTCTTAAGAATGTTTTGCCCAAGGGTACGTGTAATGACGATCTCCCGAAAGTTTTGCGGCGATGTTCTGATGTACTTACGAGATCCCCGTATAAAGTGTTGTCTGTAAATATCAATTACTTACGAAGTTGTGGGATTGTTGACTATCAACTCTCTACGTTATTGAAGCGACAACCTGCACTTTTTATTATGCATGAATCTCGACTTAAAGATTTTGTTTCAATGGCTGTAAAGGCTGGGTTTTCTCCCAACGGTACAATGTTTATTCATGGACTTCATTCTATCAGTAGTATAAGTAATGCAACTTATAAGAAGAAAGTGAAGCTGATTTGTAGTTTTGGAATAACTGAGAAAGAATGTATGAGAATGTTTAATTCGGCTCCTGTTTTGATGAGGACTTCCGTTGGTAAACTTGAGGTTGGTCTAGAATTCTTCATGAATGAGGCAAAAGTTAGCAAATCAGATATTGTTCGTAATCCTTTTTGTTTGATGCACGCAATGCATGGAAGGGTGCTCCCTCGTTATAGAGTTCTAGAGGTTCTGAAGTCGAAGAGGCTAACGAAGAAGCTCCCGAAGTTGATCGATTCATTGTGGATGCCTGATGAGGATTTCTTAGATAAATTCGTTCGTAGGTTTCCTGACAATATGAATGATTTGTTTGAGGCCTTTAGAGGTAATTCGAGGAGATAG

Coding sequence (CDS)

ATGGCAACCCGTAGAGGCATTCAATCAACTGAAAAGCCTCGTTCCGTTTACAAATATCTTTCGGACCTCGGATTATCCGACACCCAAATTAAATCAGCCGTTCGAATCACACCCCAAATCGCGTTTTCCAGCATTGAGAAAACACTGAAGCCAAAGATCGAGTTCTTACAGAATCTTGGCTTTGTTGGCTCAGATTTGAACATTGATGCCAATGTTGAGATTCTTAAGAATGTTTTGCCCAAGGGTACGTGTAATGACGATCTCCCGAAAGTTTTGCGGCGATGTTCTGATGTACTTACGAGATCCCCGTATAAAGTGTTGTCTGTAAATATCAATTACTTACGAAGTTGTGGGATTGTTGACTATCAACTCTCTACGTTATTGAAGCGACAACCTGCACTTTTTATTATGCATGAATCTCGACTTAAAGATTTTGTTTCAATGGCTGTAAAGGCTGGGTTTTCTCCCAACGGTACAATGTTTATTCATGGACTTCATTCTATCAGTAGTATAAGTAATGCAACTTATAAGAAGAAAGTGAAGCTGATTTGTAGTTTTGGAATAACTGAGAAAGAATGTATGAGAATGTTTAATTCGGCTCCTGTTTTGATGAGGACTTCCGTTGGTAAACTTGAGGTTGGTCTAGAATTCTTCATGAATGAGGCAAAAGTTAGCAAATCAGATATTGTTCGTAATCCTTTTTGTTTGATGCACGCAATGCATGGAAGGGTGCTCCCTCGTTATAGAGTTCTAGAGGTTCTGAAGTCGAAGAGGCTAACGAAGAAGCTCCCGAAGTTGATCGATTCATTGTGGATGCCTGATGAGGATTTCTTAGATAAATTCGTTCGTAGGTTTCCTGACAATATGAATGATTTGTTTGAGGCCTTTAGAGGTAATTCGAGGAGATAG

Protein sequence

MATRRGIQSTEKPRSVYKYLSDLGLSDTQIKSAVRITPQIAFSSIEKTLKPKIEFLQNLGFVGSDLNIDANVEILKNVLPKGTCNDDLPKVLRRCSDVLTRSPYKVLSVNINYLRSCGIVDYQLSTLLKRQPALFIMHESRLKDFVSMAVKAGFSPNGTMFIHGLHSISSISNATYKKKVKLICSFGITEKECMRMFNSAPVLMRTSVGKLEVGLEFFMNEAKVSKSDIVRNPFCLMHAMHGRVLPRYRVLEVLKSKRLTKKLPKLIDSLWMPDEDFLDKFVRRFPDNMNDLFEAFRGNSRR
Homology
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BLAST of CsaV3_4G004910 vs. NCBI nr
Match: XP_004149163.1 (PREDICTED: uncharacterized protein LOC101214031 [Cucumis sativus])

HSP 1 Score: 532.3 bits (1370), Expect = 1.0e-147
Identity = 277/319 (86.83%), Postives = 277/319 (86.83%), Query Frame = 0 

Query: 1   MATRRGIQSTEKPRSVYKYLSDLGLSDTQIKSAVRITPQIAFSSIEKTLKPKI------- 60
           MATRRGIQSTEKPRSVYKYLSDLGLSDTQIKSAVRITPQIAFSSIEKTLKPKI       
Sbjct: 1   MATRRGIQSTEKPRSVYKYLSDLGLSDTQIKSAVRITPQIAFSSIEKTLKPKIXXXXXXX 60

Query: 61  ----------EFLQNLGFVGSDLNIDANVEILKNVLPKGTCNDDLPKVLRRCSDVLTRSP 120
                                              LPKGTCNDDLPKVLRRCSDVLTRSP
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPKGTCNDDLPKVLRRCSDVLTRSP 120

Query: 121 YKVLSVNINYLRSCGIVDYQLSTLLKRQPALFIMHESRLKDFVSMAVKAGFSPNGTMFIH 180
           YKVLSVNINYLRSCGIVDYQLSTLLKRQPALFIMHESRLKDFVSMAVKAGFSPNGTMFIH
Sbjct: 121 YKVLSVNINYLRSCGIVDYQLSTLLKRQPALFIMHESRLKDFVSMAVKAGFSPNGTMFIH 180

Query: 181 GLHSISSISNATYKKKVKLICSFGITEKECMRMFNSAPVLMRTSVGKLEVGLEFFMNEAK 240
           GLHSISSISNATYKKKVKLICSFGITEKECMRMFNSAPVLMRTSVGKLEVGLEFFMNEAK
Sbjct: 181 GLHSISSISNATYKKKVKLICSFGITEKECMRMFNSAPVLMRTSVGKLEVGLEFFMNEAK 240

Query: 241 VSKSDIVRNPFCLMHAMHGRVLPRYRVLEVLKSKRLTKKLPKLIDSLWMPDEDFLDKFVR 300
           VSKSDIVRNPFCLMHAMHGRVLPRYRVLEVLKSKRLTKKLPKLIDSLWMPDEDFLDKFVR
Sbjct: 241 VSKSDIVRNPFCLMHAMHGRVLPRYRVLEVLKSKRLTKKLPKLIDSLWMPDEDFLDKFVR 300

Query: 301 RFPDNMNDLFEAFRGNSRR 303
           RFPDNMNDLFEAFRGNSRR
Sbjct: 301 RFPDNMNDLFEAFRGNSRR 319

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BLAST of CsaV3_4G004910 vs. NCBI nr
Match: KGN53240.1 (hypothetical protein Csa_4G036600 [Cucumis sativus])

HSP 1 Score: 532.3 bits (1370), Expect = 1.0e-147
Identity = 277/319 (86.83%), Postives = 277/319 (86.83%), Query Frame = 0 

Query: 1   MATRRGIQSTEKPRSVYKYLSDLGLSDTQIKSAVRITPQIAFSSIEKTLKPKI------- 60
           MATRRGIQSTEKPRSVYKYLSDLGLSDTQIKSAVRITPQIAFSSIEKTLKPKI       
Sbjct: 88  MATRRGIQSTEKPRSVYKYLSDLGLSDTQIKSAVRITPQIAFSSIEKTLKPKIXXXXXXX 147

Query: 61  ----------EFLQNLGFVGSDLNIDANVEILKNVLPKGTCNDDLPKVLRRCSDVLTRSP 120
                                              LPKGTCNDDLPKVLRRCSDVLTRSP
Sbjct: 148 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPKGTCNDDLPKVLRRCSDVLTRSP 207

Query: 121 YKVLSVNINYLRSCGIVDYQLSTLLKRQPALFIMHESRLKDFVSMAVKAGFSPNGTMFIH 180
           YKVLSVNINYLRSCGIVDYQLSTLLKRQPALFIMHESRLKDFVSMAVKAGFSPNGTMFIH
Sbjct: 208 YKVLSVNINYLRSCGIVDYQLSTLLKRQPALFIMHESRLKDFVSMAVKAGFSPNGTMFIH 267

Query: 181 GLHSISSISNATYKKKVKLICSFGITEKECMRMFNSAPVLMRTSVGKLEVGLEFFMNEAK 240
           GLHSISSISNATYKKKVKLICSFGITEKECMRMFNSAPVLMRTSVGKLEVGLEFFMNEAK
Sbjct: 268 GLHSISSISNATYKKKVKLICSFGITEKECMRMFNSAPVLMRTSVGKLEVGLEFFMNEAK 327

Query: 241 VSKSDIVRNPFCLMHAMHGRVLPRYRVLEVLKSKRLTKKLPKLIDSLWMPDEDFLDKFVR 300
           VSKSDIVRNPFCLMHAMHGRVLPRYRVLEVLKSKRLTKKLPKLIDSLWMPDEDFLDKFVR
Sbjct: 328 VSKSDIVRNPFCLMHAMHGRVLPRYRVLEVLKSKRLTKKLPKLIDSLWMPDEDFLDKFVR 387

Query: 301 RFPDNMNDLFEAFRGNSRR 303
           RFPDNMNDLFEAFRGNSRR
Sbjct: 388 RFPDNMNDLFEAFRGNSRR 406

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BLAST of CsaV3_4G004910 vs. NCBI nr
Match: XP_008453751.1 (PREDICTED: transcription termination factor MTERF5, chloroplastic [Cucumis melo] >XP_008453752.1 PREDICTED: transcription termination factor MTERF5, chloroplastic [Cucumis melo] >XP_008453753.1 PREDICTED: transcription termination factor MTERF5, chloroplastic [Cucumis melo] >XP_008453754.1 PREDICTED: transcription termination factor MTERF5, chloroplastic [Cucumis melo] >XP_008453755.1 PREDICTED: transcription termination factor MTERF5, chloroplastic [Cucumis melo] >XP_008453756.1 PREDICTED: transcription termination factor MTERF5, chloroplastic [Cucumis melo] >XP_008453758.1 PREDICTED: transcription termination factor MTERF5, chloroplastic [Cucumis melo])

HSP 1 Score: 434.5 bits (1116), Expect = 3.0e-118
Identity = 230/317 (72.56%), Postives = 248/317 (78.23%), Query Frame = 0 

Query: 1   MATRRGIQSTEKPRSVYKYLSDLGLSDTQIKSAVRITPQIAFSSIEKTLKPKI------- 60
           MA RRG++STEKPRSVYKYLS+LGLSDTQIKSA+R TPQ+AF+SI+KTLKPKI       
Sbjct: 77  MANRRGLKSTEKPRSVYKYLSELGLSDTQIKSAIRNTPQLAFTSIDKTLKPKIXXXXXXX 136

Query: 61  ----------EFLQNLGFVGSDLNIDANVEILKNVLPKGTCNDDLPKVLRRCSDVLTRSP 120
                                              L K  CN  LP VLRRCS +L RSP
Sbjct: 137 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAKDKCNAGLPTVLRRCSGILMRSP 196

Query: 121 YKVLSVNINYLRSCGIVDYQLSTLLKRQPALFIMHESRLKDFVSMAVKAGFSPNGTMFIH 180
            KVLSVNI+YLRSCG+VDYQL  LLKRQPAL I  ESRLKDFVSMA+KAGFS N  MFIH
Sbjct: 197 DKVLSVNISYLRSCGVVDYQLPMLLKRQPALLITRESRLKDFVSMAIKAGFSINSRMFIH 256

Query: 181 GLHSISSISNATYKKKVKLICSFGITEKECMRMFNSAPVLMRTSVGKLEVGLEFFMNEAK 240
           GL SISSISNAT+KKKV+LICSFGITEKECMRMFNSAPVLMRTS+ KLEVGLEFFMNEAK
Sbjct: 257 GLLSISSISNATFKKKVELICSFGITEKECMRMFNSAPVLMRTSIDKLEVGLEFFMNEAK 316

Query: 241 VSKSDIVRNPFCLMHAMHGRVLPRYRVLEVLKSKRLTKKLPKLIDSLWMPDEDFLDKFVR 300
           VSKS+IVR P CLMHAMH RVLPRYRVLEVLKSKRLTKKLPKLI+SLW  DEDFLD +VR
Sbjct: 317 VSKSEIVRKPSCLMHAMHERVLPRYRVLEVLKSKRLTKKLPKLINSLWKSDEDFLDIYVR 376

[Close]
BLAST of CsaV3_4G004910 vs. NCBI nr
Match: XP_022984673.1 (uncharacterized protein LOC111482884 isoform X1 [Cucurbita maxima] >XP_022984674.1 uncharacterized protein LOC111482884 isoform X2 [Cucurbita maxima] >XP_022984675.1 uncharacterized protein LOC111482884 isoform X3 [Cucurbita maxima])

HSP 1 Score: 419.5 bits (1077), Expect = 9.9e-114
Identity = 216/315 (68.57%), Postives = 252/315 (80.00%), Query Frame = 0 

Query: 1   MATRRGIQSTEKPRSVYKYLSDLGLSDTQIKSAVRITPQIAFSSIEKTLKPKIEFLQNLG 60
           M++RRGI STEKP+SVYKYLS+LG S+  I+S +R+ PQIAFS+IEKTLKPKIEF QNLG
Sbjct: 64  MSSRRGIASTEKPQSVYKYLSELGFSEAHIQSTIRLAPQIAFSNIEKTLKPKIEFFQNLG 123

Query: 61  FVGSDL-----------------NIDANVEILKNVLPKGTCNDDLPKVLRRCSDVLTRSP 120
            VGSDL                  +  +VEILK+V PK  CN DL +VLRRCSD+L RSP
Sbjct: 124 LVGSDLGRFISKHSTLLTISLEKRLMPSVEILKSVFPKDECNSDLLQVLRRCSDMLMRSP 183

Query: 121 YKVLSVNINYLRSCGIVDYQLSTLLKRQPALFIMHESRLKDFVSMAVKAGFSPNGTMFIH 180
           Y  L VNINYL+SCGIV  QLS LLKRQPALF M ES+++D VSM V+ GFS N  MF+H
Sbjct: 184 YTRLPVNINYLQSCGIVGSQLSMLLKRQPALFGMRESQVRDLVSMVVETGFSTNTRMFVH 243

Query: 181 GLHSISSISNATYKKKVKLICSFGITEKECMRMFNSAPVLMRTSVGKLEVGLEFFMNEAK 240
           GLH+ISS+SNAT+KKKV+LICSFGITEKECMRMF SAPVL+RTSVGKL+ GLEFFMNEA+
Sbjct: 244 GLHAISSVSNATFKKKVELICSFGITEKECMRMFTSAPVLIRTSVGKLKRGLEFFMNEAE 303

Query: 241 VSKSDIVRNPFCLMHAMHGRVLPRYRVLEVLKSKRLTKKLPKLIDSLWMPDEDFLDKFVR 299
           VS+SDIVR P CLMHAM GRVLPRYRVL+V+ SKRL+KK  +LID L M DE+FLDKFV 
Sbjct: 304 VSRSDIVRKPTCLMHAMQGRVLPRYRVLQVVNSKRLSKKHLQLIDILGMSDENFLDKFVH 363

[Close]
BLAST of CsaV3_4G004910 vs. NCBI nr
Match: XP_022984676.1 (uncharacterized protein LOC111482884 isoform X4 [Cucurbita maxima])

HSP 1 Score: 416.4 bits (1069), Expect = 8.4e-113
Identity = 214/315 (67.94%), Postives = 250/315 (79.37%), Query Frame = 0 

Query: 1   MATRRGIQSTEKPRSVYKYLSDLGLSDTQIKSAVRITPQIAFSSIEKTLKPKIEFLQNLG 60
           M++RRGI STEKP+SVYKYLS+LG S+  I+S +R+ PQIAFS+IEKTLKPKIEF QNLG
Sbjct: 64  MSSRRGIASTEKPQSVYKYLSELGFSEAHIQSTIRLAPQIAFSNIEKTLKPKIEFFQNLG 123

Query: 61  FVGSDL-----------------NIDANVEILKNVLPKGTCNDDLPKVLRRCSDVLTRSP 120
            VGSDL                  +  +VEILK+V PK  CN D  +V+RRCSD+L RSP
Sbjct: 124 LVGSDLGWFISKHSTLLTISLEKRLMPSVEILKSVFPKDECNSDFLQVMRRCSDMLKRSP 183

Query: 121 YKVLSVNINYLRSCGIVDYQLSTLLKRQPALFIMHESRLKDFVSMAVKAGFSPNGTMFIH 180
           Y  L VNINYL+SCGIV  QLS LLKRQPALF M ES+++D VSM V+ GFS N  MF+H
Sbjct: 184 YTRLLVNINYLQSCGIVGSQLSMLLKRQPALFGMRESQVRDIVSMVVETGFSTNTKMFVH 243

Query: 181 GLHSISSISNATYKKKVKLICSFGITEKECMRMFNSAPVLMRTSVGKLEVGLEFFMNEAK 240
           GLH+ISS+SNAT+KKKV+LICSFGITEKECMRMF SAPVL+RTSVGKL+ GLEFFMNEA+
Sbjct: 244 GLHAISSVSNATFKKKVELICSFGITEKECMRMFTSAPVLIRTSVGKLKRGLEFFMNEAE 303

Query: 241 VSKSDIVRNPFCLMHAMHGRVLPRYRVLEVLKSKRLTKKLPKLIDSLWMPDEDFLDKFVR 299
           VS+SDIVR P CLMHAM GRVLPRYRVL+V+ SKRL+KK  +LID L M DE+FLDKFV 
Sbjct: 304 VSRSDIVRKPTCLMHAMQGRVLPRYRVLQVVNSKRLSKKHLQLIDILGMSDENFLDKFVH 363

[Close]
BLAST of CsaV3_4G004910 vs. TAIR10
Match: AT5G64950.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 199.5 bits (506), Expect = 2.9e-51
Identity = 114/315 (36.19%), Postives = 187/315 (59.37%), Query Frame = 0 

Query: 7   IQSTEKPRSVYKYLSDLGLSDTQIKSAVRITPQIAFSSIEKTLKPKIEFLQNLGFVGSDL 66
           ++S E+PRSV + L     SDTQI+ ++R+ P++ F ++EK L+PK+ F +++GF GS L
Sbjct: 65  LKSLEQPRSVIQMLKSYSFSDTQIQKSIRVHPRMMFYNVEKILEPKLRFFKDIGFTGSGL 124

Query: 67  -----------------NIDANVEILKNVL-PKGTCNDDLPKVLRRCS-DVLTRSPYKVL 126
                             +   VEILK+++ PK   ++DLP +L RC   +L+R P   L
Sbjct: 125 GKFVSQNSSVVGVSLVKKLIPTVEILKSIVAPK---HEDLPVILSRCGWLLLSRDPNLFL 184

Query: 127 SVNINYLRSCGIVDYQLSTLLKRQPALFIMHESRLKDFVSMAVKAGFSPNGTMFIHGLHS 186
             NI+YL +CGIV  QL++LL+RQP +F + E +L+ +VS A+  GF+ N  M +H + S
Sbjct: 185 LPNISYLETCGIVGSQLASLLRRQPRIFNLSEEKLRGYVSRALDLGFTLNSRMLVHAVIS 244

Query: 187 ISSISNATYKKKVKLICSFGITEKECMRMFNSAPVLMRTSVGKLEVGLEFFMNEAKVSKS 246
           +SS+S  T+ +KVKL  + G +E E   +   +P L+R S  KL +G EF++    + + 
Sbjct: 245 LSSLSEKTFDRKVKLFMANGFSEDEITDIIRRSPGLIRCSEDKLTLGFEFYLKRMGLERE 304

Query: 247 DIVRNPFCLMHAMHGRVLPRYRVLEVLKSKRL----TKKLPKLIDSLWMPDEDFLDKFVR 298
            + + P  L + +  RV+PR +VL++L+ K L     KK   ++  + M +E FL+K+V 
Sbjct: 305 ALAKRPCVLSYNLEKRVIPRLKVLQILREKGLLLKEEKKKKNMVGIVEMTEEAFLEKYVV 364

[Close]
BLAST of CsaV3_4G004910 vs. TAIR10
Match: AT1G21150.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 100.1 bits (248), Expect = 2.4e-21
Identity = 74/309 (23.95%), Postives = 130/309 (42.07%), Query Frame = 0 

Query: 9   STEKPRSVYKYLSDLGLSDTQIKSAVRITPQIAFSSIEKTLKPKIEFLQNLGFVGSDL-- 68
           S++KP SV     D G ++ QI S ++  P++   S E  + PK                
Sbjct: 84  SSKKPDSVLALFKDHGFTNDQITSVIKSFPRVLSLSPEDVISPKXXXXXXXXXXXXXXXX 143

Query: 69  ---------------NIDANVEILKNVLPKGTCNDDLPKVLRRCSDVLTRSPYKVLSVNI 128
                           +    + LK++L +    + + K L+R     +      +S+ +
Sbjct: 144 XXXXXXXXXXXXXHKRLIPCYDSLKSILVE---EESVVKCLKRGIRCFSLKITHCVSLRV 203

Query: 129 NYLRSCGIVDYQLSTLLKRQPALFIMHESRLKDFVSMAVKAGFSPNGTMFIHGLHSISSI 188
           +  R  G+ D  +  L++  P  F   E R  + ++     GF P    F+H + +    
Sbjct: 204 SICRELGVPDKSIKWLVQASPFTFFSRERRFNEVLNRVCSYGFDPKKAGFVHAMVAFDCT 263

Query: 189 SNATYKKKVKLICSFGITEKECMRMFNSAPVLMRTSVGKLEVGLEFFMNEAKVSKSDIVR 248
           S +  ++K KL   FG ++++ +      P  +  S  K+   LE+ +N   +   DIV 
Sbjct: 264 SESAMERKFKLFQCFGWSKEDFVAAIMRFPNCVTVSDEKIMYTLEYLVNNIGLQARDIVA 323

Query: 249 NPFCLMHAMHGRVLPRYRVLEVLKSKRLTKKLP-KLIDSLWMPDEDFLDKFVRRFPDNMN 300
            P  L  +M  R+ PR +V+ +L SK L KK        L +   +F+DKFV ++ D M 
Sbjct: 324 RPVVLSLSMEKRIKPRNQVISLLLSKGLVKKEDINYFTILKLKSSEFMDKFVLKYQDEMP 383

[Close]
BLAST of CsaV3_4G004910 vs. TAIR10
Match: AT1G61990.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 79.7 bits (195), Expect = 3.4e-15
Identity = 81/338 (23.96%), Postives = 138/338 (40.83%), Query Frame = 0 

Query: 13  PRSVYKYLSDLGLSDTQIKSAVRITPQIAFSSIEKTLKPKIEFLQNLGFVGSDLNIDANV 72
           P SV       G +D+QI + +   P +  +  +K L  K++ LQ+ G   S++      
Sbjct: 84  PDSVLSLFRSYGFTDSQISTIITDYPLLLVADAKKALGRKLQILQSRGASSSEI-----T 143

Query: 73  EILKNVLPKGTCNDDLPKVLRRCSDVL---TRSPYKVLS-------VNINYLRSCGIVDY 132
           EI+  V P+      +        D++   T S Y++          N++ LR  G+   
Sbjct: 144 EIVSTV-PRILGKKSITVYYDAVKDIIVADTSSSYELPQGSQGNKIRNVSALRELGMPSR 203

Query: 133 QLSTLL--KRQPALFIMHESRLKDFVSMAVKAGFSPNGTMFIHGLHSISSISNATYKKKV 192
            L  LL  K QP   +  +      +   V+ GF P  T F+  L  +  +S  T ++KV
Sbjct: 204 LLLPLLVSKSQP---VCGKENFDASLKKVVEMGFDPTTTKFVLALRMLYQMSEKTIEEKV 263

Query: 193 KLICSFGITEKECMRMFNSAPVLMRTSVGK--------LEVGL----------------- 252
            +  S G T  +   +F   P +++ S  K        L++G                  
Sbjct: 264 VVFRSLGFTVDDVWEIFKKTPSVLKVSKKKILKSAETFLDLGYSRAEFLMMVKRYPPCIE 323

Query: 253 ----------EFFMNEAKVSKSDIVRNPFCLMHAMHGRVLPRYRVLEVLKSKRLTKK--- 301
                     EF + + K  ++ +V +P    ++M  R++PR  +LE L SK L +K   
Sbjct: 324 YSVESVKKKNEFLVKKMKWPRNALVLHPQVFGYSMEKRIIPRCNILEALLSKGLLRKGSE 383

[Close]
BLAST of CsaV3_4G004910 vs. TAIR10
Match: AT5G07900.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 78.2 bits (191), Expect = 9.8e-15
Identity = 65/307 (21.17%), Postives = 118/307 (38.44%), Query Frame = 0 

Query: 7   IQSTEKPRSVYKYLSDLGLSDTQIKSAVRITPQIAFSSIEKTLKPKIEFLQNLGFVGSDL 66
           + S E+P +V   L D G +  QI S V+  P +  ++ E  L PK+ F  ++G   S L
Sbjct: 95  LDSPERPNTVLNLLRDHGFTTAQISSLVKKRPVLLLANAESVLLPKLSFFLSIGVSKSLL 154

Query: 67  --------------NIDANVEILKNVLPKGTCNDDLPKVLRRCSDVLTRSPYKVLSVNIN 126
                                                                       
Sbjct: 155 ARTLASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 214

Query: 127 YLRSCGIVDYQLSTLLKRQPALFIMHESRLKDFVSMAVKAGFSPNGTMFIHGLHSISSIS 186
            +   G+ +  +  LL   P   +      +     A + GF+P  + F+  +H++S   
Sbjct: 215 XMAETGVPEKCIKLLLTHFPEAVMQKNHEFQAIAKQAQEMGFNPQKSTFVLAIHALSGKG 274

Query: 187 N-ATYKKKVKLICSFGITEKECMRMFNSAPVLMRTSVGKLEVGLEFFMNEAKVSKSDIVR 246
           N + + K  ++   +G +E + M  F   P  M  S  K+   +E+F+NE  ++   I +
Sbjct: 275 NKSIWDKCFEVYQRWGWSEDDIMCAFKKHPHCMMLSERKINRTMEYFVNEMNMAPRSIAQ 334

Query: 247 NPFCLMHAMHGRVLPRYRVLEVLKSKRLTKKLPKLIDSLWMPDEDFLDKFVRRFPDNMND 299
            P  L  ++  R++PR  V +VL S  L K+   L   L   ++ FL+K V ++ + + +
Sbjct: 335 CPVVLFFSLEKRIIPRCSVTKVLVSNGLVKEDWSLTSLLVPVEKVFLEKLVIKYEEELPE 394

[Close]
BLAST of CsaV3_4G004910 vs. TAIR10
Match: AT1G62120.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 72.8 bits (177), Expect = 4.1e-13
Identity = 77/338 (22.78%), Postives = 132/338 (39.05%), Query Frame = 0 

Query: 13  PRSVYKYLSDLGLSDTQIKSAVRITPQIAFSSIEKTLKPKIEFLQNLGFVGSDL--NIDA 72
           P SV   L   G +D+QI + +R  P++     EK+L PK++FLQ++G   S+L   + A
Sbjct: 88  PDSVLSLLRSHGFTDSQISNIIRTFPRLLILDAEKSLAPKLQFLQSIGASSSELTETVSA 147

Query: 73  NVEILKNVLPKGTCN-----------DDLPKVLRRCSDVLTRSPYKVLSVNINYLRSCGI 132
             +IL     K               D   K+ + C  +   S  +    N+  LR  G+
Sbjct: 148 VPKILGKRKGKSLSRYYDFVKVIIEADKSSKLEKLCHSLPEGSKQENKIRNLLVLREMGV 207

Query: 133 VDYQLSTLLKRQPALFIMHESRLKDFVSMAVKAGFSPNGTMFIHGLHSISSISNATYKKK 192
               L +LL    A  +  + + K+ +  AV+ GF P    F+  L+ +  +S+   + K
Sbjct: 208 PQRLLFSLL-ISDAGDVCGKEKFKESLKKAVEIGFDPTTATFVKALNVLYGLSDKGIENK 267

Query: 193 VKLICSFGITEKECMRMFNSAPVLM----------------------------------- 252
                  G+   +   MF   P ++                                   
Sbjct: 268 FNACKRLGLAVDDVWAMFKKWPNILTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 327

Query: 253 RTSVGKLEVGLEFFMNEAKVSKSDIVRNPFCLMHAMHGRVLPRYRVLEVLKSKRLTK-KL 300
                 ++   EF + E       +   P  L +++  R +PR  V++VL SK L + +L
Sbjct: 328 XXXXXXMKTKTEFLVTEMNWPLKAVASIPQVLGYSLEKRTVPRCNVIKVLISKGLLESEL 387

[Close]
BLAST of CsaV3_4G004910 vs. Swiss-Prot
Match: sp|Q9FK23|MTEF8_ARATH (Transcription termination factor MTERF8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF8 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 9.1e-10
Identity = 52/247 (21.05%), Postives = 110/247 (44.53%), Query Frame = 0 

Query: 38  PQIAFSSIEKTLKPKIEFLQNLG-----FVGSDL------------NIDANVEILKNVLP 97
           P I  S ++  L P+++F++NL        G+ L            +++  VE LK+   
Sbjct: 239 PVILNSDLDSQLIPRVDFIRNLSGEDDFATGTVLRRLPAILSYSVEHMNGQVEFLKSF-- 298

Query: 98  KGTCNDDLPKVLRRCSDVLTRSPYKVLSVNINYLRSCGIVDYQLSTLLKRQPALFIMHES 157
            G  ++ + K++    +V++ S  + L   I +L+ CG     +   L + P +  + E+
Sbjct: 299 AGLTSEQVFKIVHVFPNVISTSKERKLRPRIEFLKECGFDSPGMFKFLSKAPLILALSEN 358

Query: 158 RLKDFVSMAVKAGFSPNGTMFIHGLHSISSISNATYKKKVKLICSFGITEKECMRMFNSA 217
            L   +   VK G+          + +++  S+   ++ + L  S+G++ ++ + M    
Sbjct: 359 NLSHKLGFLVKIGYKHRTKELAFAMGAVTRTSSDNMQRVIGLYLSYGLSFEDILAMSTKH 418

Query: 218 PVLMRTSVGKLEVGLEFFMNEAKVSKSDIVRNPFCLMHAMHGRVLPRYRVLEVLKSKRLT 268
           P +++ +   LE  LE+ +        +++  P  L + +  R+  RY   E LKS+   
Sbjct: 419 PQVLQYNYTSLEEKLEYLIEYMGREVEELLAFPAFLGYKLDSRIKHRYE--EKLKSRGEN 478

[Close]
BLAST of CsaV3_4G004910 vs. TrEMBL
Match: tr|A0A0A0KUB9|A0A0A0KUB9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G036600 PE=4 SV=1)

HSP 1 Score: 532.3 bits (1370), Expect = 6.9e-148
Identity = 277/319 (86.83%), Postives = 277/319 (86.83%), Query Frame = 0 

Query: 1   MATRRGIQSTEKPRSVYKYLSDLGLSDTQIKSAVRITPQIAFSSIEKTLKPKI------- 60
           MATRRGIQSTEKPRSVYKYLSDLGLSDTQIKSAVRITPQIAFSSIEKTLKPKI       
Sbjct: 88  MATRRGIQSTEKPRSVYKYLSDLGLSDTQIKSAVRITPQIAFSSIEKTLKPKIXXXXXXX 147

Query: 61  ----------EFLQNLGFVGSDLNIDANVEILKNVLPKGTCNDDLPKVLRRCSDVLTRSP 120
                                              LPKGTCNDDLPKVLRRCSDVLTRSP
Sbjct: 148 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPKGTCNDDLPKVLRRCSDVLTRSP 207

Query: 121 YKVLSVNINYLRSCGIVDYQLSTLLKRQPALFIMHESRLKDFVSMAVKAGFSPNGTMFIH 180
           YKVLSVNINYLRSCGIVDYQLSTLLKRQPALFIMHESRLKDFVSMAVKAGFSPNGTMFIH
Sbjct: 208 YKVLSVNINYLRSCGIVDYQLSTLLKRQPALFIMHESRLKDFVSMAVKAGFSPNGTMFIH 267

Query: 181 GLHSISSISNATYKKKVKLICSFGITEKECMRMFNSAPVLMRTSVGKLEVGLEFFMNEAK 240
           GLHSISSISNATYKKKVKLICSFGITEKECMRMFNSAPVLMRTSVGKLEVGLEFFMNEAK
Sbjct: 268 GLHSISSISNATYKKKVKLICSFGITEKECMRMFNSAPVLMRTSVGKLEVGLEFFMNEAK 327

Query: 241 VSKSDIVRNPFCLMHAMHGRVLPRYRVLEVLKSKRLTKKLPKLIDSLWMPDEDFLDKFVR 300
           VSKSDIVRNPFCLMHAMHGRVLPRYRVLEVLKSKRLTKKLPKLIDSLWMPDEDFLDKFVR
Sbjct: 328 VSKSDIVRNPFCLMHAMHGRVLPRYRVLEVLKSKRLTKKLPKLIDSLWMPDEDFLDKFVR 387

Query: 301 RFPDNMNDLFEAFRGNSRR 303
           RFPDNMNDLFEAFRGNSRR
Sbjct: 388 RFPDNMNDLFEAFRGNSRR 406

[Close]
BLAST of CsaV3_4G004910 vs. TrEMBL
Match: tr|A0A1S3BXT8|A0A1S3BXT8_CUCME (transcription termination factor MTERF5, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103494394 PE=4 SV=1)

HSP 1 Score: 434.5 bits (1116), Expect = 2.0e-118
Identity = 230/317 (72.56%), Postives = 248/317 (78.23%), Query Frame = 0 

Query: 1   MATRRGIQSTEKPRSVYKYLSDLGLSDTQIKSAVRITPQIAFSSIEKTLKPKI------- 60
           MA RRG++STEKPRSVYKYLS+LGLSDTQIKSA+R TPQ+AF+SI+KTLKPKI       
Sbjct: 77  MANRRGLKSTEKPRSVYKYLSELGLSDTQIKSAIRNTPQLAFTSIDKTLKPKIXXXXXXX 136

Query: 61  ----------EFLQNLGFVGSDLNIDANVEILKNVLPKGTCNDDLPKVLRRCSDVLTRSP 120
                                              L K  CN  LP VLRRCS +L RSP
Sbjct: 137 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAKDKCNAGLPTVLRRCSGILMRSP 196

Query: 121 YKVLSVNINYLRSCGIVDYQLSTLLKRQPALFIMHESRLKDFVSMAVKAGFSPNGTMFIH 180
            KVLSVNI+YLRSCG+VDYQL  LLKRQPAL I  ESRLKDFVSMA+KAGFS N  MFIH
Sbjct: 197 DKVLSVNISYLRSCGVVDYQLPMLLKRQPALLITRESRLKDFVSMAIKAGFSINSRMFIH 256

Query: 181 GLHSISSISNATYKKKVKLICSFGITEKECMRMFNSAPVLMRTSVGKLEVGLEFFMNEAK 240
           GL SISSISNAT+KKKV+LICSFGITEKECMRMFNSAPVLMRTS+ KLEVGLEFFMNEAK
Sbjct: 257 GLLSISSISNATFKKKVELICSFGITEKECMRMFNSAPVLMRTSIDKLEVGLEFFMNEAK 316

Query: 241 VSKSDIVRNPFCLMHAMHGRVLPRYRVLEVLKSKRLTKKLPKLIDSLWMPDEDFLDKFVR 300
           VSKS+IVR P CLMHAMH RVLPRYRVLEVLKSKRLTKKLPKLI+SLW  DEDFLD +VR
Sbjct: 317 VSKSEIVRKPSCLMHAMHERVLPRYRVLEVLKSKRLTKKLPKLINSLWKSDEDFLDIYVR 376

[Close]
BLAST of CsaV3_4G004910 vs. TrEMBL
Match: tr|D7SW46|D7SW46_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_07s0031g01450 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 2.0e-70
Identity = 149/310 (48.06%), Postives = 204/310 (65.81%), Query Frame = 0 

Query: 8   QSTEKPRSVYKYLSDLGLSDTQIKSAVRITPQIAFSSIEKTLKPKIEFLQNLGFVGSDLN 67
           +STE P+SV  +L DLG S+  I+++VR+ PQI FS I+KTLKPK++F + LG VG+DL 
Sbjct: 55  KSTENPQSVIHFLRDLGFSEAHIRTSVRVGPQILFSDIDKTLKPKVQFFEQLGLVGADLG 114

Query: 68  --IDAN---------------VEILKNVLPKGTCNDDLPKVLRRCSDVLTRSPYKVLSVN 127
             I  N               +EILK  L     N DL +VLRRC+ VL+R+P  +LS N
Sbjct: 115 KFISKNSKVLTISLEKKLVPCIEILKKTLSDDENNGDLIRVLRRCTWVLSRNPELLLS-N 174

Query: 128 INYLRSCGIVDYQLSTLLKRQPALFIMHESRLKDFVSMAVKAGFSPNGTMFIHGLHSISS 187
           I +L SCGIV  QLS LL RQP LF++ +S LKD VS AV  GFS    M ++ L++IS 
Sbjct: 175 IAFLESCGIVGSQLSMLLTRQPRLFVIKQSTLKDLVSRAVDMGFSIESRMLVYALYTISC 234

Query: 188 ISNATYKKKVKLICSFGITEKECMRMFNSAPVLMRTSVGKLEVGLEFFMNEAKVSKSDIV 247
           + + T +KK +L  S+G TE+EC+ MF   P L+R S  KL++G+EFFMN  K  K+ +V
Sbjct: 235 LRDETLRKKFELFRSWGFTEQECIEMFRRTPGLLRASEEKLKLGMEFFMNTMKFEKTLLV 294

Query: 248 RNPFCLMHAMHGRVLPRYRVLEVLKSKRLTKKLPKLIDSLWMPDEDFLDKFVRRFPDNMN 301
             P  LM +M  RV+PRYRVL++LKSKRL K+ P  I+ L + DE+FLDKF+ RF D+  
Sbjct: 295 HRPTILMLSMEDRVIPRYRVLQILKSKRLLKREPSFINVLSLTDEEFLDKFISRFADDAE 354

[Close]
BLAST of CsaV3_4G004910 vs. TrEMBL
Match: tr|A0A2P4IYS7|A0A2P4IYS7_QUESU (Putative inactive receptor kinase OS=Quercus suber OX=58331 GN=CFP56_67309 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 6.0e-67
Identity = 142/304 (46.71%), Postives = 195/304 (64.14%), Query Frame = 0 

Query: 13   PRSVYKYLSDLGLSDTQIKSAVRITPQIAFSSIEKTLKPKIEFLQNLGFVGSDLN--IDA 72
            P+SV  +L +LG S+TQI+SAVR++P I FS I+KTLKPKIEF Q LGFVGSDL   I  
Sbjct: 1016 PQSVVLFLQNLGFSETQIRSAVRVSPHILFSDIDKTLKPKIEFFQQLGFVGSDLGKFISK 1075

Query: 73   N---------------VEILKNVLPKGTCNDDLPKVLRRCSDVLTRSPYKVLSVNINYLR 132
            N               VEILK +L     N  L +VLRRC+ V+   P   L  NI YL+
Sbjct: 1076 NSTLLSVSLERRLIPCVEILKKILCNNENNQCLLRVLRRCNGVVKGDPESRLLGNIAYLK 1135

Query: 133  SCGIVDYQLSTLLKRQPALFIMHESRLKDFVSMAVKAGFSPNGTMFIHGLHSISSISNAT 192
             CGIV  QLS LL RQP LF++ E++L+  VS  +  GF  N  M ++ ++++S +S+ T
Sbjct: 1136 RCGIVGSQLSMLLTRQPWLFVIQENKLRGLVSRVLDMGFVVNSRMLVYAVYTVSCMSHET 1195

Query: 193  YKKKVKLICSFGITEKECMRMFNSAPVLMRTSVGKLEVGLEFFMNEAKVSKSDIVRNPFC 252
            + +K+  I S G +  ECM MF  AP L+R S  KL++G+EFFMN  K+ +S ++R P C
Sbjct: 1196 FMRKLDFIRSSGFSSDECMEMFRKAPGLLRASEEKLKLGIEFFMNTIKLERSVLIRLPSC 1255

Query: 253  LMHAMHGRVLPRYRVLEVLKSKRLTKKLPKLIDSLWMPDEDFLDKFVRRFPDNMNDLFEA 300
            LM +M  RV+PRYRVL+++KSKRL KK P  +  L + +E FL KF+ +F D+  DL  A
Sbjct: 1256 LMFSMEERVIPRYRVLQIMKSKRLLKKEPSFLHMLNLTEEVFLTKFIAKFGDHTADLLVA 1315

[Close]
BLAST of CsaV3_4G004910 vs. TrEMBL
Match: tr|A0A2P4IZ02|A0A2P4IZ02_QUESU (Isoform 2 of probable inactive receptor kinase OS=Quercus suber OX=58331 GN=CFP56_76115 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 6.0e-67
Identity = 142/304 (46.71%), Postives = 195/304 (64.14%), Query Frame = 0 

Query: 13  PRSVYKYLSDLGLSDTQIKSAVRITPQIAFSSIEKTLKPKIEFLQNLGFVGSDLN--IDA 72
           P+SV  +L +LG S+TQI+SAVR++P I FS I+KTLKPKIEF Q LGFVGSDL   I  
Sbjct: 660 PQSVVLFLQNLGFSETQIRSAVRVSPHILFSDIDKTLKPKIEFFQQLGFVGSDLGKFISK 719

Query: 73  N---------------VEILKNVLPKGTCNDDLPKVLRRCSDVLTRSPYKVLSVNINYLR 132
           N               VEILK +L     N  L +VLRRC+ V+   P   L  NI YL+
Sbjct: 720 NSTLLSVSLERRLIPCVEILKKILCNNENNQCLLRVLRRCNGVVKGDPESRLLGNIAYLK 779

Query: 133 SCGIVDYQLSTLLKRQPALFIMHESRLKDFVSMAVKAGFSPNGTMFIHGLHSISSISNAT 192
            CGIV  QLS LL RQP LF++ E++L+  VS  +  GF  N  M ++ ++++S +S+ T
Sbjct: 780 RCGIVGSQLSMLLTRQPWLFVIQENKLRGLVSRVLDMGFVVNSRMLVYAVYTVSCMSHET 839

Query: 193 YKKKVKLICSFGITEKECMRMFNSAPVLMRTSVGKLEVGLEFFMNEAKVSKSDIVRNPFC 252
           + +K+  I S G +  ECM MF  AP L+R S  KL++G+EFFMN  K+ +S ++R P C
Sbjct: 840 FMRKLDFIRSSGFSSDECMEMFRKAPGLLRASEEKLKLGIEFFMNTIKLERSVLIRLPSC 899

Query: 253 LMHAMHGRVLPRYRVLEVLKSKRLTKKLPKLIDSLWMPDEDFLDKFVRRFPDNMNDLFEA 300
           LM +M  RV+PRYRVL+++KSKRL KK P  +  L + +E FL KF+ +F D+  DL  A
Sbjct: 900 LMFSMEERVIPRYRVLQIMKSKRLLKKEPSFLHMLNLTEEVFLTKFIAKFGDHTADLLVA 959

The following BLAST results are available for this feature:
BLAST of CsaV3_4G004910 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004149163.11.0e-14786.83PREDICTED: uncharacterized protein LOC101214031 [Cucumis sativus][more]
KGN53240.11.0e-14786.83hypothetical protein Csa_4G036600 [Cucumis sativus][more]
XP_008453751.13.0e-11872.56PREDICTED: transcription termination factor MTERF5, chloroplastic [Cucumis melo]... [more]
XP_022984673.19.9e-11468.57uncharacterized protein LOC111482884 isoform X1 [Cucurbita maxima] >XP_022984674... [more]
XP_022984676.18.4e-11367.94uncharacterized protein LOC111482884 isoform X4 [Cucurbita maxima][more]
BLAST of CsaV3_4G004910 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G64950.12.9e-5136.19Mitochondrial transcription termination factor family protein[more]
AT1G21150.12.4e-2123.95Mitochondrial transcription termination factor family protein[more]
AT1G61990.13.4e-1523.96Mitochondrial transcription termination factor family protein[more]
AT5G07900.19.8e-1521.17Mitochondrial transcription termination factor family protein[more]
AT1G62120.14.1e-1322.78Mitochondrial transcription termination factor family protein[more]
BLAST of CsaV3_4G004910 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FK23|MTEF8_ARATH9.1e-1021.05Transcription termination factor MTERF8, chloroplastic OS=Arabidopsis thaliana O... [more]
BLAST of CsaV3_4G004910 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KUB9|A0A0A0KUB9_CUCSA6.9e-14886.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G036600 PE=4 SV=1[more]
tr|A0A1S3BXT8|A0A1S3BXT8_CUCME2.0e-11872.56transcription termination factor MTERF5, chloroplastic OS=Cucumis melo OX=3656 G... [more]
tr|D7SW46|D7SW46_VITVI2.0e-7048.06Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_07s0031g01450 PE=4 SV=... [more]
tr|A0A2P4IYS7|A0A2P4IYS7_QUESU6.0e-6746.71Putative inactive receptor kinase OS=Quercus suber OX=58331 GN=CFP56_67309 PE=4 ... [more]
tr|A0A2P4IZ02|A0A2P4IZ02_QUESU6.0e-6746.71Isoform 2 of probable inactive receptor kinase OS=Quercus suber OX=58331 GN=CFP5... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003690double-stranded DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR038538MTERF_sf
IPR003690MTERF
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006996 organelle organization
cellular_component GO:0005575 cellular_component
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003690 double-stranded DNA binding
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G004910.1CsaV3_4G004910.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 194..225
e-value: 170.0
score: 9.8
coord: 89..120
e-value: 0.62
score: 19.1
coord: 31..62
e-value: 0.01
score: 25.0
coord: 226..257
e-value: 240.0
score: 8.7
coord: 125..155
e-value: 130.0
score: 10.7
coord: 159..189
e-value: 1800.0
score: 1.8
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 18..66
e-value: 9.1E-7
score: 28.1
coord: 68..157
e-value: 2.4E-6
score: 26.7
coord: 170..278
e-value: 1.0E-12
score: 47.6
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3DG3DSA:1.25.70.10coord: 7..66
e-value: 6.3E-7
score: 30.8
coord: 67..293
e-value: 7.6E-25
score: 89.6
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 7..299
NoneNo IPR availablePANTHERPTHR13068:SF18EMB|CAB62602.1coord: 7..299