CmaCh16G006670 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTACGCGCTGAGATCATCGTTCTCTATTTCCTCTCGCCATAATCCTCCCTCCTTGCTCCGAATTGATCCTCTCTTGTACTGTTTCTTCTCTTCTTCTTCCCACAGCCAAGCCTCTGCTTCATATGGAATCGTCGTTCAATACCTTATTGATACCTTTGAACTCTCCCCCGCCAGAGCGGTGTCGATTATGAGCAGCCGTAGAGGCATTGCATCAACGGAAAAGCCTCAATCCGTTTACAAATATCTTTCAGAGCTCGGATTCTCCGAAGCTCACATTCAATCGACGATTCGCCTTGCGCCGCAGATCGCGTTTTCCAACATCGAAAAGACTCTGAAGCCGAAGATCGAGTTCTTCCAGAATCTTGGCTTGGTCGGCTCCGATTTGGGTTGGTTCATTTCCAAGCATTCTACGCTTTTGACTATTAGTTTGGAGAAGAGATTGATGCCTAGTGTTGAGATTCTTAAGAGTGTTTTCCCCAAGGATGAGTGTAATAGCGATTTCCTGCAAGTTATGCGGCGATGTTCTGATATGCTTAAGCGATCTCCGTATACAAGGTTGCTTGTCAATATTAATTACTTACAAAGTTGTGGGATTGTTGGTTCTCAACTCTCTATGTTACTGAAGAGGCAACCTGCACTTTTTGGTATGCGTGAATCTCAAGTTAGAGATATTGTTTCTATGGTTGTAGAGACTGGTTTTTCTACAAATACTAAAATGTTTGTTCATGGACTTCATGCTATCAGTAGTGTAAGTAATGCGACCTTCAAGAAGAAAGTGGAATTGATTTGCAGCTTTGGAATAACTGAGAAGGAATGTATGAGAATGTTTACTTCTGCTCCTGTTTTGATAAGAACCTCCGTTGGTAAACTTAAACGAGGCCTAGAATTTTTTATGAATGAGGCAGAAGTCAGCAGATCAGATATTGTTCGTAAACCTACTTGTTTGATGCACGCCATGCAGGGGAGGGTGCTCCCTCGNCGAAAAGACTCTGAAGCCGAAGATCGAGTTCTTCCAGAATCTTGGCTTGGTCGGCTCCGATTTGGGTAGGTTCATTTCCAAGCATTCTACGCTTTTGACTATTAGTTTGGAAAAGAGATTGATGCCTAGTGTTGAGATTCTTAAGAGTGTTTTCCCCAAGGATGAGTGTAATAGCGATCTCCTACAAGTTTTGCGGCGATGTTCTGATATGCTTATGCGATCTCCGTATACAAGGTTGCCTGTCAATATTAATTACTTACAAAGTTGTGGGATTGTTGGTTCTCAACTCTCTATGTTACTGAAGAGGCAACCTGCACTTTTTGGTATGCGTGAATCTCAAGTTAGAGATCTTGTTTCTATGGTTGTAGAGACGGGTTTTTCTACAAATACTAGAATGTTTGTTCATGGACTTCATGCTATCAGTAGTGTAAGTAATGCGACCTTCAAGAAGAAAGTGGAATTGATTTGCAGCTTTGGAATAACTGAGAAAGAATGTATGAGAATGTTTACTTCTGCTCCTGTTTTGATAAGAACCTCCGTTGGTAAACTTAAACGAGGTCTAGAATTCTTTATGAATGAGGCAGAAGTCAGCAGATCAGATATTGTTCGTAAACCTACTTGTTTGATGCACGCCATGCAGGGGAGGGTGCTCCCTCGGTATAGAGTTCTTCAGGTCGTAAACTCGAAGAGGCTATCNCGAAAAGACTCTGAAGCCGAAGATCGAGTTCTTCCAGAATCTTGGCTTGGTCGGCTCCGATTTGGGTTGGTTCATTTCCAAGCATTCTACGCTTTTGACTATTAGTTTGGAGAAGAGATTGATGCCTAGTGTTGAGATTCTTAAGAGTGTTTTCCCCAAGGATGAGTGTAATAGCGATTTCCTGCAAGTTATGCGGCGATGTTCTGATATGCTTAAGCGATCTCCGTATACAAGGTTGCTTGTCAATATTAATTACTTACAAAGTTGTGGGATTGTTGGTTCTCAACTCTCTATGTTACTGAAGAGGCAACCTGCACTTTTTGGTATGCGTGAATCTCAAGTTAGAGATATTGTTTCTATGGTTGTAGAGACTGGTTTTTCTACAAATACTAAAATGTTTGTTCATGGACTTCATGCTATCAGTAGTGTAAGTAATGCGACCTTCAAGAAGAAAGTGGAATTGATTTGCAGCTTTGGAATAACTGAGAAGGAATGTATGAGAATGTTTACTTCTGCTCCTGTTTTGATAAGAACCTCCGTTGGTAAACTTAAACGAGGCCTAGAATTTTTTATGAATGAGGCAGAAGTCAGCAGATCAGATATTGTTCGTAAACCTACTTGTTTGATGCACGCCATGCAGGGGAGGGTGCTCCCTCGGTATAGAGTTCTTCAGGTCGTAAACTCGAAGAGGCTATCGAAGAAACACCTGCAATTGATCGATATATTGGGGATGTCTGATGAGAATTTCTTGGATAAATTCGTGCACAGGTTTCCTGATCATGTGACAGAATTGTTGGCGGCCTTTAGAGGTCAATGTATGGATGAATTGCAGCCTAAGGAGTTGGAAACATGA ATGTACGCGCTGAGATCATCGTTCTCTATTTCCTCTCGCCATAATCCTCCCTCCTTGCTCCGAATTGATCCTCTCTTGTACTGTTTCTTCTCTTCTTCTTCCCACAGCCAAGCCTCTGCTTCATATGGAATCGTCGTTCAATACCTTATTGATACCTTTGAACTCTCCCCCGCCAGAGCGGTGTCGATTATGAGCAGCCGTAGAGGCATTGCATCAACGGAAAAGCCTCAATCCGTTTACAAATATCTTTCAGAGCTCGGATTCTCCGAAGCTCACATTCAATCGACGATTCGCCTTGCGCCGCAGATCGCGTTTTCCAACATCGAAAAGACTCTGAAGCCGAAGATCGAGTTCTTCCAGAATCTTGGCTTGGTCGGCTCCGATTTGGGTTGGTTCATTTCCAAGCATTCTACGCTTTTGACTATTAGTTTGGAGAAGAGATTGATGCCTAGTGTTGAGATTCTTAAGAGTGTTTTCCCCAAGGATGAGTGTAATAGCGATTTCCTGCAAGTTATGCGGCGATGTTCTGATATGCTTAAGCGATCTCCGTATACAAGGTTGCTTGTCAATATTAATTACTTACAAAGTTGTGGGATTGTTGGTTCTCAACTCTCTATGTTACTGAAGAGGCAACCTGCACTTTTTGGTATGCGTGAATCTCAAGTTAGAGATATTGTTTCTATGGTTGTAGAGACTGGTTTTTCTACAAATACTAAAATGTTTGTTCATGGACTTCATGCTATCAGTAGTGTAAGTAATGCGACCTTCAAGAAGAAAGTGGAATTGATTTGCAGCTTTGGAATAACTGAGAAGGAATGTATGAGAATGTTTACTTCTGCTCCTGTTTTGATAAGAACCTCCGTTGGTAAACTTAAACGAGGCCTAGAATTTTTTATGAATGAGGCAGAAGTCAGCAGATCAGATATTGTTCGTAAACCTACTTGTTTGATGCACGCCATGCAGGGGAGGGTGCTCCCTCGNCGAAAAGACTCTGAAGCCGAAGATCGAGTTCTTCCAGAATCTTGGCTTGGTCGGCTCCGATTTGGTTTGGAAAAGAGATTGATGCCTAGTGTTGAGATTCTTAAGAGTGTTTTCCCCAAGGATGAGTGTAATAGCGATCTCCTACAAGTTTTGCGGCGATGTTCTGATATGCTTATGCGATCTCCGTATACAAGGTTGCCTGTCAATATTAATTACTTACAAAGTTGTGGGATTGTTGGTTCTCAACTCTCTATGTTACTGAAGAGGCAACCTGCACTTTTTGGTATGCGTGAATCTCAAGTTAGAGATCTTGTTTCTATGGTTGTAGAGACGGGTTTTTCTACAAATACTAGAATGTTTGTTCATGGACTTCATGCTATCAGTAGTGTAAGTAATGCGACCTTCAAGAAGAAAGTGGAATTGATTTGCAGCTTTGGAATAACTGAGAAAGAATGTATGAGAATGTTTACTTCTGCTCCTGTTTTGATAAGAACCTCCGTTGGTAAACTTAAACGAGGTCTAGAATTCTTTATGAATGAGGCAGAAGTCAGCAGATCAGATATTGTTCGTAAACCTACTTGTTTGATGCACGCCATGCAGGGGAGGGTGCTCCCTCGGTATAGAGTTCTTCAGGTCACTCTGAAGCCGAAGATCGAGTTCTTCCAGAATCTTGGCTTGGTCGGCTCCGATTTGGGTTGGTTCATTTCCAAGCATTCTACGCTTTTGACTATTAGTTTGGAGAAGAGATTGATGCCTAGTGTTGAGATTCTTAAGAGTGTTTTCCCCAAGGATGAGTGTAATAGCGATTTCCTGCAAGTTATGCGGCGATGTTCTGATATGCTTAAGCGATCTCCGTATACAAGGTTGCTTGTCAATATTAATTACTTACAAAGTTGTGGGATTGTTGGTTCTCAACTCTCTATGTTACTGAAGAGGCAACCTGCACTTTTTGGTATGCGTGAATCTCAAGTTAGAGATATTGTTTCTATGGTTGTAGAGACTGGTTTTTCTACAAATACTAAAATGTTTGTTCATGGACTTCATGCTATCAGTAGTGTAAGTAATGCGACCTTCAAGAAGAAAGTGGAATTGATTTGCAGCTTTGGAATAACTGAGAAGGAATGTATGAGAATGTTTACTTCTGCTCCTGTTTTGATAAGAACCTCCGTTGGTAAACTTAAACGAGGCCTAGAATTTTTTATGAATGAGGCAGAAGTCAGCAGATCAGATATTGTTCGTAAACCTACTTGTTTGATGCACGCCATGCAGGGGAGGGTGCTCCCTCGGTATAGAGTTCTTCAGGTCGTAAACTCGAAGAGGCTATCGAAGAAACACCTGCAATTGATCGATATATTGGGGATGTCTGATGAGAATTTCTTGGATAAATTCGTGCACAGGTTTCCTGATCATGTGACAGAATTGTTGGCGGCCTTTAGAGGTCAATGTATGGATGAATTGCAGCCTAAGGAGTTGGAAACATGA ATGTACGCGCTGAGATCATCGTTCTCTATTTCCTCTCGCCATAATCCTCCCTCCTTGCTCCGAATTGATCCTCTCTTGTACTGTTTCTTCTCTTCTTCTTCCCACAGCCAAGCCTCTGCTTCATATGGAATCGTCGTTCAATACCTTATTGATACCTTTGAACTCTCCCCCGCCAGAGCGGTGTCGATTATGAGCAGCCGTAGAGGCATTGCATCAACGGAAAAGCCTCAATCCGTTTACAAATATCTTTCAGAGCTCGGATTCTCCGAAGCTCACATTCAATCGACGATTCGCCTTGCGCCGCAGATCGCGTTTTCCAACATCGAAAAGACTCTGAAGCCGAAGATCGAGTTCTTCCAGAATCTTGGCTTGGTCGGCTCCGATTTGGGTTGGTTCATTTCCAAGCATTCTACGCTTTTGACTATTAGTTTGGAGAAGAGATTGATGCCTAGTGTTGAGATTCTTAAGAGTGTTTTCCCCAAGGATGAGTGTAATAGCGATTTCCTGCAAGTTATGCGGCGATGTTCTGATATGCTTAAGCGATCTCCGTATACAAGGTTGCTTGTCAATATTAATTACTTACAAAGTTGTGGGATTGTTGGTTCTCAACTCTCTATGTTACTGAAGAGGCAACCTGCACTTTTTGGTATGCGTGAATCTCAAGTTAGAGATATTGTTTCTATGGTTGTAGAGACTGGTTTTTCTACAAATACTAAAATGTTTGTTCATGGACTTCATGCTATCAGTAGTGTAAGTAATGCGACCTTCAAGAAGAAAGTGGAATTGATTTGCAGCTTTGGAATAACTGAGAAGGAATGTATGAGAATGTTTACTTCTGCTCCTGTTTTGATAAGAACCTCCGTTGGTAAACTTAAACGAGGCCTAGAATTTTTTATGAATGAGGCAGAAGTCAGCAGATCAGATATTGTTCGTAAACCTACTTGTTTGATGCACGCCATGCAGGGGAGGGTGCTCCCTCGNCGAAAAGACTCTGAAGCCGAAGATCGAGTTCTTCCAGAATCTTGGCTTGGTCGGCTCCGATTTGGTTTGGAAAAGAGATTGATGCCTAGTGTTGAGATTCTTAAGAGTGTTTTCCCCAAGGATGAGTGTAATAGCGATCTCCTACAAGTTTTGCGGCGATGTTCTGATATGCTTATGCGATCTCCGTATACAAGGTTGCCTGTCAATATTAATTACTTACAAAGTTGTGGGATTGTTGGTTCTCAACTCTCTATGTTACTGAAGAGGCAACCTGCACTTTTTGGTATGCGTGAATCTCAAGTTAGAGATCTTGTTTCTATGGTTGTAGAGACGGGTTTTTCTACAAATACTAGAATGTTTGTTCATGGACTTCATGCTATCAGTAGTGTAAGTAATGCGACCTTCAAGAAGAAAGTGGAATTGATTTGCAGCTTTGGAATAACTGAGAAAGAATGTATGAGAATGTTTACTTCTGCTCCTGTTTTGATAAGAACCTCCGTTGGTAAACTTAAACGAGGTCTAGAATTCTTTATGAATGAGGCAGAAGTCAGCAGATCAGATATTGTTCGTAAACCTACTTGTTTGATGCACGCCATGCAGGGGAGGGTGCTCCCTCGGTATAGAGTTCTTCAGGTCACTCTGAAGCCGAAGATCGAGTTCTTCCAGAATCTTGGCTTGGTCGGCTCCGATTTGGGTTGGTTCATTTCCAAGCATTCTACGCTTTTGACTATTAGTTTGGAGAAGAGATTGATGCCTAGTGTTGAGATTCTTAAGAGTGTTTTCCCCAAGGATGAGTGTAATAGCGATTTCCTGCAAGTTATGCGGCGATGTTCTGATATGCTTAAGCGATCTCCGTATACAAGGTTGCTTGTCAATATTAATTACTTACAAAGTTGTGGGATTGTTGGTTCTCAACTCTCTATGTTACTGAAGAGGCAACCTGCACTTTTTGGTATGCGTGAATCTCAAGTTAGAGATATTGTTTCTATGGTTGTAGAGACTGGTTTTTCTACAAATACTAAAATGTTTGTTCATGGACTTCATGCTATCAGTAGTGTAAGTAATGCGACCTTCAAGAAGAAAGTGGAATTGATTTGCAGCTTTGGAATAACTGAGAAGGAATGTATGAGAATGTTTACTTCTGCTCCTGTTTTGATAAGAACCTCCGTTGGTAAACTTAAACGAGGCCTAGAATTTTTTATGAATGAGGCAGAAGTCAGCAGATCAGATATTGTTCGTAAACCTACTTGTTTGATGCACGCCATGCAGGGGAGGGTGCTCCCTCGGTATAGAGTTCTTCAGGTCGTAAACTCGAAGAGGCTATCGAAGAAACACCTGCAATTGATCGATATATTGGGGATGTCTGATGAGAATTTCTTGGATAAATTCGTGCACAGGTTTCCTGATCATGTGACAGAATTGTTGGCGGCCTTTAGAGGTCAATGTATGGATGAATTGCAGCCTAAGGAGTTGGAAACATGA MYALRSSFSISSRHNPPSLLRIDPLLYCFFSSSSHSQASASYGIVVQYLIDTFELSPARAVSIMSSRRGIASTEKPQSVYKYLSELGFSEAHIQSTIRLAPQIAFSNIEKTLKPKIEFFQNLGLVGSDLGWFISKHSTLLTISLEKRLMPSVEILKSVFPKDECNSDFLQVMRRCSDMLKRSPYTRLLVNINYLQSCGIVGSQLSMLLKRQPALFGMRESQVRDIVSMVVETGFSTNTKMFVHGLHAISSVSNATFKKKVELICSFGITEKECMRMFTSAPVLIRTSVGKLKRGLEFFMNEAEVSRSDIVRKPTCLMHAMQGRVLPRRKDSEAEDRVLPESWLGRLRFGLEKRLMPSVEILKSVFPKDECNSDLLQVLRRCSDMLMRSPYTRLPVNINYLQSCGIVGSQLSMLLKRQPALFGMRESQVRDLVSMVVETGFSTNTRMFVHGLHAISSVSNATFKKKVELICSFGITEKECMRMFTSAPVLIRTSVGKLKRGLEFFMNEAEVSRSDIVRKPTCLMHAMQGRVLPRYRVLQVTLKPKIEFFQNLGLVGSDLGWFISKHSTLLTISLEKRLMPSVEILKSVFPKDECNSDFLQVMRRCSDMLKRSPYTRLLVNINYLQSCGIVGSQLSMLLKRQPALFGMRESQVRDIVSMVVETGFSTNTKMFVHGLHAISSVSNATFKKKVELICSFGITEKECMRMFTSAPVLIRTSVGKLKRGLEFFMNEAEVSRSDIVRKPTCLMHAMQGRVLPRYRVLQVVNSKRLSKKHLQLIDILGMSDENFLDKFVHRFPDHVTELLAAFRGQCMDELQPKELET
BLAST of CmaCh16G006670 vs. Swiss-Prot
Match: MTEF5_ARATH (Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana GN=MTERF5 PE=2 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 3.3e-06 Identity = 51/200 (25.50%), Postives = 90/200 (45.00%), Query Frame = 1
BLAST of CmaCh16G006670 vs. Swiss-Prot
Match: MTEF2_ARATH (Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana GN=MTERF2 PE=3 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 4.3e-06 Identity = 51/210 (24.29%), Postives = 92/210 (43.81%), Query Frame = 1
BLAST of CmaCh16G006670 vs. TrEMBL
Match: A0A0A0KUB9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G036600 PE=4 SV=1) HSP 1 Score: 441.8 bits (1135), Expect = 1.8e-120 Identity = 238/351 (67.81%), Postives = 273/351 (77.78%), Query Frame = 1
BLAST of CmaCh16G006670 vs. TrEMBL
Match: D7SW46_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g01450 PE=4 SV=1) HSP 1 Score: 293.5 bits (750), Expect = 8.0e-76 Identity = 157/308 (50.97%), Postives = 216/308 (70.13%), Query Frame = 1
BLAST of CmaCh16G006670 vs. TrEMBL
Match: B9T3X3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0169990 PE=4 SV=1) HSP 1 Score: 293.1 bits (749), Expect = 1.0e-75 Identity = 148/282 (52.48%), Postives = 205/282 (72.70%), Query Frame = 1
BLAST of CmaCh16G006670 vs. TrEMBL
Match: M5W835_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015928mg PE=4 SV=1) HSP 1 Score: 288.5 bits (737), Expect = 2.6e-74 Identity = 142/283 (50.18%), Postives = 203/283 (71.73%), Query Frame = 1
BLAST of CmaCh16G006670 vs. TrEMBL
Match: A0A067F1I9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g047553mg PE=4 SV=1) HSP 1 Score: 271.2 bits (692), Expect = 4.2e-69 Identity = 142/303 (46.86%), Postives = 211/303 (69.64%), Query Frame = 1
BLAST of CmaCh16G006670 vs. TAIR10
Match: AT5G64950.1 (AT5G64950.1 Mitochondrial transcription termination factor family protein) HSP 1 Score: 214.9 bits (546), Expect = 1.8e-55 Identity = 123/311 (39.55%), Postives = 192/311 (61.74%), Query Frame = 1
BLAST of CmaCh16G006670 vs. TAIR10
Match: AT5G07900.1 (AT5G07900.1 Mitochondrial transcription termination factor family protein) HSP 1 Score: 134.8 bits (338), Expect = 2.4e-31 Identity = 97/342 (28.36%), Postives = 167/342 (48.83%), Query Frame = 1
BLAST of CmaCh16G006670 vs. TAIR10
Match: AT1G21150.1 (AT1G21150.1 Mitochondrial transcription termination factor family protein) HSP 1 Score: 118.6 bits (296), Expect = 1.8e-26 Identity = 77/266 (28.95%), Postives = 132/266 (49.62%), Query Frame = 1
BLAST of CmaCh16G006670 vs. TAIR10
Match: AT1G61970.1 (AT1G61970.1 Mitochondrial transcription termination factor family protein) HSP 1 Score: 90.5 bits (223), Expect = 5.2e-18 Identity = 85/360 (23.61%), Postives = 154/360 (42.78%), Query Frame = 1
BLAST of CmaCh16G006670 vs. TAIR10
Match: AT1G62120.1 (AT1G62120.1 Mitochondrial transcription termination factor family protein) HSP 1 Score: 87.4 bits (215), Expect = 4.4e-17 Identity = 85/364 (23.35%), Postives = 157/364 (43.13%), Query Frame = 1
BLAST of CmaCh16G006670 vs. NCBI nr
Match: gi|700198082|gb|KGN53240.1| (hypothetical protein Csa_4G036600 [Cucumis sativus]) HSP 1 Score: 441.8 bits (1135), Expect = 2.6e-120 Identity = 238/351 (67.81%), Postives = 273/351 (77.78%), Query Frame = 1
BLAST of CmaCh16G006670 vs. NCBI nr
Match: gi|659107586|ref|XP_008453750.1| (PREDICTED: uncharacterized protein LOC103494394 [Cucumis melo]) HSP 1 Score: 433.7 bits (1114), Expect = 7.1e-118 Identity = 225/340 (66.18%), Postives = 272/340 (80.00%), Query Frame = 1
BLAST of CmaCh16G006670 vs. NCBI nr
Match: gi|449462880|ref|XP_004149163.1| (PREDICTED: uncharacterized protein LOC101214031 [Cucumis sativus]) HSP 1 Score: 382.5 bits (981), Expect = 1.9e-102 Identity = 192/264 (72.73%), Postives = 222/264 (84.09%), Query Frame = 1
BLAST of CmaCh16G006670 vs. NCBI nr
Match: gi|1009146593|ref|XP_015890954.1| (PREDICTED: uncharacterized protein LOC107425470 [Ziziphus jujuba]) HSP 1 Score: 304.3 bits (778), Expect = 6.5e-79 Identity = 158/302 (52.32%), Postives = 217/302 (71.85%), Query Frame = 1
BLAST of CmaCh16G006670 vs. NCBI nr
Match: gi|694409455|ref|XP_009379362.1| (PREDICTED: uncharacterized protein LOC103967783 [Pyrus x bretschneideri]) HSP 1 Score: 302.4 bits (773), Expect = 2.5e-78 Identity = 152/315 (48.25%), Postives = 218/315 (69.21%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
|