CsaV3_4G000420 (gene) Cucumber (Chinese Long) v3

NameCsaV3_4G000420
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Description40S ribosomal protein S29
Locationchr4 : 253062 .. 254281 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACACTCGAACGTTTGGAACTCTCATCCTAAGAACTATGGACCTGGTTCTCGCACTTGGTAAGCAAATATCTTCTCACTCATCTACTTTTTATTGGTGGAACATGAATCTCGAACACAATGTTTCCTTTTTTTTTTTTTTGTGTCTAGTTTATTTCAACGACTTGAGAGTTCATCAACTGATTAGCTCATATTAACTTTGCGCGCTTCGTAATGGGACCTGAAGAATATTGTTTGATTGAAGATTTATTTATTATGTATTACTTTTCTTGTTTTGATAGATAACCAGATACCTACGTTTCAGTTCGATTTTTAATATTTTAACATGGCTTTAAGTTTAATCTGTTGTTCTAAAGGTTTTTCCAACTTGGATTCGATTTTGTGATGCTTAAAAGTTTGTGTTGACTTTTGGGGTTTCTGTTATCGCGTTGTAAAAGGCTTCGCTAATTGCAGAAGATTTATAATTTGAACCCGGATTTACATATCGATCGATTATGTCATGGTTTTGTTAAGGCGGATGAAAGGTTATAGCTGATGTTATGTGATGTATGGGATCTGTAGTAGGCGAGAAAATCTTTATACTTTATGCGTATTTTATCCTTCTCTCCTTTAATCCGAATGAATCACTTTGCTTGGTTGAGTTTTTTTAGTTCCTACGTCTATTAGATCAATTTTTGTCGGTTACCCAGAAGTTATTGAGTCTACCTAAGAGTAATGGAACACATTTTTATCCTTAATGGATCTCTTAGGCTTCATTCGGTAGCCTTTTTGTTTTTGGTTTTTGGATTTTGCAAATTAAGCAGATTTCCTCCCACTTTTGCTTACCTTGGTGTGGAAAATAGTTGAATATTTAGCCAAATTTTTAGTAACTATTTTTTTTTTTGGTTTTCAAATTTTGGCTTGGTTTTTTAAATCATTGGTTAAAAGTAAATAACATAACAAGAAATTTAAATTTGAAGTAGTGTTTGTAGGCTCAATTTTTTTTTTTTTTAAAAAAAGACCTAATGGCTAGGAAATGAGGCCTTGGTGGTTAAAGGTTGTCTATAGTATTTGTTGACTTTTGAGAAAGCTGAAATTCAATAGCTCCTTTCTTTGAATCCTCTTCTCAGTCGTGTGTGCGGAAATCCCCATGGGTTGATCAGGAAGTATGGACTTATGTGTTGCAGACAATGCTTCCGCAGCAATGCCAAGGAAATTGGTTTCATCAAGGCAAGTTAA

mRNA sequence

ATGGGACACTCGAACGTTTGGAACTCTCATCCTAAGAACTATGGACCTGGTTCTCGCACTTGTCGTGTGTGCGGAAATCCCCATGGGTTGATCAGGAAGTATGGACTTATGTGTTGCAGACAATGCTTCCGCAGCAATGCCAAGGAAATTGGTTTCATCAAGGCAAGTTAA

Coding sequence (CDS)

ATGGGACACTCGAACGTTTGGAACTCTCATCCTAAGAACTATGGACCTGGTTCTCGCACTTGTCGTGTGTGCGGAAATCCCCATGGGTTGATCAGGAAGTATGGACTTATGTGTTGCAGACAATGCTTCCGCAGCAATGCCAAGGAAATTGGTTTCATCAAGGCAAGTTAA

Protein sequence

MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS
BLAST of CsaV3_4G000420 vs. NCBI nr
Match: KGN52774.1 (hypothetical protein Csa_4G000930 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 1.3e-27
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0

Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS 57
          MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS 56

BLAST of CsaV3_4G000420 vs. NCBI nr
Match: KDP41637.1 (hypothetical protein JCGZ_16044 [Jatropha curcas])

HSP 1 Score: 129.4 bits (324), Expect = 3.9e-27
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 0

Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS 57
          MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK S
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVS 56

BLAST of CsaV3_4G000420 vs. NCBI nr
Match: BAU00845.1 (hypothetical protein VIGAN_10248000 [Vigna angularis var. angularis])

HSP 1 Score: 128.3 bits (321), Expect = 8.6e-27
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0

Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS 57
          MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK +
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN 56

BLAST of CsaV3_4G000420 vs. NCBI nr
Match: CBI27789.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 127.5 bits (319), Expect = 1.5e-26
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0

Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 55
          MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 54

BLAST of CsaV3_4G000420 vs. NCBI nr
Match: KGN43857.1 (hypothetical protein Csa_7G071460 [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 1.5e-26
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0

Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 55
          MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 54

BLAST of CsaV3_4G000420 vs. TAIR10
Match: AT3G43980.1 (Ribosomal protein S14p/S29e family protein)

HSP 1 Score: 117.1 bits (292), Expect = 3.6e-27
Identity = 50/54 (92.59%), Postives = 50/54 (92.59%), Query Frame = 0

Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 55
          MGHSNVWNSHPK YGPGSR CRVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Sbjct: 1  MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54

BLAST of CsaV3_4G000420 vs. TAIR10
Match: AT3G44010.1 (Ribosomal protein S14p/S29e family protein)

HSP 1 Score: 117.1 bits (292), Expect = 3.6e-27
Identity = 50/54 (92.59%), Postives = 50/54 (92.59%), Query Frame = 0

Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 55
          MGHSNVWNSHPK YGPGSR CRVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Sbjct: 1  MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54

BLAST of CsaV3_4G000420 vs. TAIR10
Match: AT4G33865.1 (Ribosomal protein S14p/S29e family protein)

HSP 1 Score: 117.1 bits (292), Expect = 3.6e-27
Identity = 50/54 (92.59%), Postives = 50/54 (92.59%), Query Frame = 0

Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 55
          MGHSNVWNSHPK YGPGSR CRVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Sbjct: 1  MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54

BLAST of CsaV3_4G000420 vs. Swiss-Prot
Match: sp|Q680P8|RS29_ARATH (40S ribosomal protein S29 OS=Arabidopsis thaliana OX=3702 GN=RPS29A PE=3 SV=2)

HSP 1 Score: 117.1 bits (292), Expect = 6.5e-26
Identity = 50/54 (92.59%), Postives = 50/54 (92.59%), Query Frame = 0

Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 55
          MGHSNVWNSHPK YGPGSR CRVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Sbjct: 1  MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54

BLAST of CsaV3_4G000420 vs. Swiss-Prot
Match: sp|Q5I7K3|RS29_WHEAT (40S ribosomal protein S29 OS=Triticum aestivum OX=4565 GN=RPS29 PE=1 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.1e-25
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 0

Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 55
          MGHSNVWNSHPKNYG GSR CRVCGN HGLIRKYGLMCCRQCFRS+AK+IGFIK
Sbjct: 1  MGHSNVWNSHPKNYGAGSRVCRVCGNSHGLIRKYGLMCCRQCFRSDAKDIGFIK 54

BLAST of CsaV3_4G000420 vs. Swiss-Prot
Match: sp|Q7XYB0|RS29_GRIJA (40S ribosomal protein S29 OS=Griffithsia japonica OX=83288 GN=RPS29 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 4.5e-19
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 0

Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 55
          MGH N+W SHP+ YG GSR+C++CGN HGLIRKY +  CRQCFR  AK+IGFIK
Sbjct: 1  MGHQNIWYSHPRKYGKGSRSCKICGNKHGLIRKYSMNICRQCFREYAKDIGFIK 54

BLAST of CsaV3_4G000420 vs. Swiss-Prot
Match: sp|Q4PM47|RS29_IXOSC (40S ribosomal protein S29 OS=Ixodes scapularis OX=6945 GN=RpS29 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.9e-18
Identity = 38/54 (70.37%), Postives = 42/54 (77.78%), Query Frame = 0

Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 55
          MGH N+W SHP+ YGPGSR CRVC N HGLIRKYGL  CR+CFR  A +IGF K
Sbjct: 1  MGHENIWYSHPRKYGPGSRYCRVCANHHGLIRKYGLNICRRCFRQYAADIGFKK 54

BLAST of CsaV3_4G000420 vs. Swiss-Prot
Match: sp|Q6F473|RS29_PLUXY (40S ribosomal protein S29 OS=Plutella xylostella OX=51655 GN=RpS29 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 6.5e-18
Identity = 37/54 (68.52%), Postives = 42/54 (77.78%), Query Frame = 0

Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 55
          MGH+N+W SHP+ YG GSR+CR C N HGLIRKYGL  CRQCFR  A +IGF K
Sbjct: 1  MGHANIWYSHPRKYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYANDIGFKK 54

BLAST of CsaV3_4G000420 vs. TrEMBL
Match: tr|A0A0A0KV31|A0A0A0KV31_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000930 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 8.8e-28
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0

Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS 57
          MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS 56

BLAST of CsaV3_4G000420 vs. TrEMBL
Match: tr|F6HXU9|F6HXU9_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_09s0002g00970 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.5e-27
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 0

Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS 57
          MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK S
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVS 56

BLAST of CsaV3_4G000420 vs. TrEMBL
Match: tr|A0A067KZM9|A0A067KZM9_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_16044 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.5e-27
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 0

Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS 57
          MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK S
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVS 56

BLAST of CsaV3_4G000420 vs. TrEMBL
Match: tr|A0A0S3T7T0|A0A0S3T7T0_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.10G248000 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.7e-27
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0

Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS 57
          MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK +
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN 56

BLAST of CsaV3_4G000420 vs. TrEMBL
Match: tr|A0A2P5BZY0|A0A2P5BZY0_9ROSA (Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_136200 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 9.7e-27
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0

Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 55
          MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 54

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN52774.11.3e-27100.00hypothetical protein Csa_4G000930 [Cucumis sativus][more]
KDP41637.13.9e-2798.21hypothetical protein JCGZ_16044 [Jatropha curcas][more]
BAU00845.18.6e-2796.43hypothetical protein VIGAN_10248000 [Vigna angularis var. angularis][more]
CBI27789.31.5e-26100.00unnamed protein product, partial [Vitis vinifera][more]
KGN43857.11.5e-26100.00hypothetical protein Csa_7G071460 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
AT3G43980.13.6e-2792.59Ribosomal protein S14p/S29e family protein[more]
AT3G44010.13.6e-2792.59Ribosomal protein S14p/S29e family protein[more]
AT4G33865.13.6e-2792.59Ribosomal protein S14p/S29e family protein[more]
Match NameE-valueIdentityDescription
sp|Q680P8|RS29_ARATH6.5e-2692.5940S ribosomal protein S29 OS=Arabidopsis thaliana OX=3702 GN=RPS29A PE=3 SV=2[more]
sp|Q5I7K3|RS29_WHEAT1.1e-2590.7440S ribosomal protein S29 OS=Triticum aestivum OX=4565 GN=RPS29 PE=1 SV=1[more]
sp|Q7XYB0|RS29_GRIJA4.5e-1968.5240S ribosomal protein S29 OS=Griffithsia japonica OX=83288 GN=RPS29 PE=3 SV=1[more]
sp|Q4PM47|RS29_IXOSC2.9e-1870.3740S ribosomal protein S29 OS=Ixodes scapularis OX=6945 GN=RpS29 PE=3 SV=1[more]
sp|Q6F473|RS29_PLUXY6.5e-1868.5240S ribosomal protein S29 OS=Plutella xylostella OX=51655 GN=RpS29 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
tr|A0A0A0KV31|A0A0A0KV31_CUCSA8.8e-28100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000930 PE=4 SV=1[more]
tr|F6HXU9|F6HXU9_VITVI2.5e-2798.21Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_09s0002g00970 PE=3 SV=... [more]
tr|A0A067KZM9|A0A067KZM9_JATCU2.5e-2798.21Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_16044 PE=3 SV=1[more]
tr|A0A0S3T7T0|A0A0S3T7T0_PHAAN5.7e-2796.43Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.10G... [more]
tr|A0A2P5BZY0|A0A2P5BZY0_9ROSA9.7e-27100.00Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_136200 PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR001209Ribosomal_S14
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005634 nucleus
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003677 DNA binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0008270 zinc ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G000420.1CsaV3_4G000420.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:4.10.830.10coord: 1..55
e-value: 5.6E-34
score: 117.7
NoneNo IPR availablePANTHERPTHR12010:SF9SUBFAMILY NOT NAMEDcoord: 1..54
NoneNo IPR availablePANTHERPTHR1201040S RIBOSOMAL PROTEIN S29coord: 1..54
NoneNo IPR availableSUPERFAMILYSSF57716Glucocorticoid receptor-like (DNA-binding domain)coord: 13..55
IPR001209Ribosomal protein S14PFAMPF00253Ribosomal_S14coord: 7..56
e-value: 4.1E-19
score: 68.0

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CsaV3_4G000420CsaV3_4G034910Cucumber (Chinese Long) v3cuccucB165