Carg19680 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19680
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	40s ribosomal protein s29
Location	Cucurbita_argyrosperma_scaffold_133 : 123524 .. 126250 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGCACTCCAACGTGTGGAACTCTCATCCGAAGAGCTATGGACCTGGTTCTCGCACCTGGTAAGCAAATGTCTTCTCACTCCTCTGGTTTCCGAGAAAATTGATGGAGGAAGGATCTGGAACATTAGTTTCGTTTTCTGTTTTTGTCTGGTTCATTTGAACGAGTTGGAAGTTCATCTACTGAGTAAATAATGTTTAAGCTTGTTTCTATTGCTAAAGTTTGTTCTTGCGGGGTTTGTAATGAAACCTGAAGAATATTGTGCGGCTGAGTACGTATATGCATTACTTTTCTTGGTAAAGGATCGATTAGATAATCAGACGCCTAGGCGTTCGGTTAGCTTTTCTCTTTTTTTCTTTTTTCTTTTTAATTTCAACATGACTTTTAGCTGTTGTGTTGTCCTCAGGATTTTCCCAACTTGGATGAGATTATGAGATGCTTAGATTTTGTGCTGATTTTGGGGTTTCCTGTTGTTACTGCTCTGTAAGAGTCGTTACACTTGCAGACAATTTCTATTTCGAACCTGTATTTACATAGTGACCGTATCATATATCGTTTTAGGTATAGTTTCGGGTGAAAAGTTATAACCGATGTTCTGTGATGGATGGGTTTCTGTTTTGTGGAGTTATTTGAATTTCGAAGTCTATCTTGATGATGAACTGTTCCTCATGGATGCCCGTAGTATGAGTAAAAATTATTCTTGTATATGAAAAGAAGTCTGATCTTTTCTTTTGGAGCTGTGGACTGAAACCTTTAAGGCTATAACCCCAAGAAGTGTAGATCATTTTGGCAATTACCCATAAGTTATCTAGTCTAGCCATTAGTAACTGAACACTGTATTATCCTTAGTGGATGTCGTAGTGGTTGATGTTGTATTATAAATTGGCTTTGGAGAAAGCTGAATTTCAATAAAATTCCTTTCTTTCAATCCTCATTTCAGTCGTGTGTGCGGAAATCCCCATGGGTTGATCAGAAAGTATGGACTTATGTGCTGCAGACAATGCTTCCGTAGCAATGCCAAGGAAATTGGGTTCATTAAGGCAAGTGGTTTTTGTACTCTATGATTATTTGATGAGATATACGCATTATCTTCTGCATTCTCTGAACTTGGAACTTTCCCATTTGTGCAGTACCGCTAAGAAGCTAACATCTCTGGAAGAGAGGTTGGGTTGAATTTATTGAAGAAGATTTTTCAATGTTTAGCAATGTTTTCTCTCTTGTTTACTCGGTATCGAATATGAAATGATTGTTAGACGACGATTTTGACACTTGGTTCTGGACTAAATTTAACGCTTCTTAATTGAGCTTCCTCTTGATGTTATTTTGACAATTATTCCTTCTGTTCTTCAGTTTCTAAGTATGTTTGATGTGTGATGCCTCTTATGCGTTCATATCGTTTATGAGCTTAGGATTTAGAAATATATGAATTAAAGATGGTTTAAGCCATGAGGGGTTACTTTTCTTTGTATGGTTACGAGAACTGCATTCTTGTGATTTTACCTAATTTGCAAACCACATGTTTCTAAATTTGGGAATATAGGCTTGTTTATGATCGTAGTTAATTGAACGAATGATTTATTAATTAAGACAAATAAATTATTCTAGCTAAAATACCATTTTGGCCCTATATTTTGGGTTGTCGATTCTAATGTGAAGGATAGAAATTCTGATGAGATCCAGTGTAGATTTAACTTTGAAGGATAGATAGGTCGATTCTGATGAGATCCAGTGTAGATCTAACTTTCTATCCGCTCTAAGGGATCCAAGCAATTTGGGGGGTCGGGAGGGACTACCTCCTTGAGAATTGAAACATTCCTCATCAGTATATGAACAACTATCTCGACCAAGAACTACACGCTCCTTTCATTCTGGTGTGATGGAGGGGTTATAAGATATCAACTACCCTTCTAAATATATTTAAAAACTTTCAAAATTATGATAAACACTTTCAAAATGAATGCAAAGACAACGTTTATTATTAGATAATGATTCTCATCCATCTTTGATAGGATTTCACCATATAAGCAACAAAACAACAAAGACATTTGATGTTTGAAATTTATCTTTTTTTTTTTTTTTTTTTTCTGGTTTTGTTTTGGTGGGGTCGGCCCTTAAATAGTAATAATTGATATACACTACTACTACTACGGACTCTTAACCTATATATATATATATACTTCGTTCTTGCTCATTTTAGCTACTAAGGGTCACTCATCTGAAACACAGACCTGTTTGAATCTAAACCACCAAAAATGGAACCTCTAAGAAACTGAATACCTTCTGTTCCTCGAAGGCGTTGACTTTGCTTCCTCTTGATTAGCAGACCCGAGGCTCTCCGACGAATCCGAGCTGCTGTTTTCACCATACCCTCCTCCTTTACTTGACCATAGCTTAGTGAAAAGCTTCTTTGACTTCAGCATGCCTTTCATCTTACTCAGAGCTGCTTTGTCAATACCATTTTTACCAACTCCATTCCTCTCACTACCTCCTCTACCATTAGCAACCCTTAAGGAAGCCAGCTCCCCTTTGAGGGCCTTCAGCTCCTCAGCCATGGCTACTGCATCCCAGTCTTCCTCAGGGTTCGTCGTGGCGGATCTTGAGCTGCCGTGTGACCCACTTGTTAGATCCTTGATCCCTTTAGGTAGGTCGGGAGTGCTGCTGCCTGATGACGCCGACGCCCTGACTTGCTCGAAAAATAATACCTGCACAACCATACGTAGAGGGAGC

mRNA sequence

ATGGGGCACTCCAACGTGTGGAACTCTCATCCGAAGAGCTATGGACCTGGTTCTCGCACCTGTCGTGTGTGCGGAAATCCCCATGGGTTGATCAGAAAGTATGGACTTATGTGCTGCAGACAATGCTTCCGTAGCAATGCCAAGGAAATTGGGTTCATTAAGGCAAGTGACCCGAGGCTCTCCGACGAATCCGAGCTGCTGTTTTCACCATACCCTCCTCCTTTACTTGACCATAGCTTAGTGAAAAGCTTCTTTGACTTCAGCATGCCTTTCATCTTACTCAGAGCTGCTTTGTCAATACCATTTTTACCAACTCCATTCCTCTCACTACCTCCTCTACCATTAGCAACCCTTAAGGAAGCCAGCTCCCCTTTGAGGGCCTTCAGCTCCTCAGCCATGGCTACTGCATCCCAGTCTTCCTCAGGGTTCGTCGTGGCGGATCTTGAGCTGCCGTGTGACCCACTTGTTAGATCCTTGATCCCTTTAGGTAGGTCGGGAGTGCTGCTGCCTGATGACGCCGACGCCCTGACTTGCTCGAAAAATAATACCTGCACAACCATACGTAGAGGGAGC

Coding sequence (CDS)

ATGGGGCACTCCAACGTGTGGAACTCTCATCCGAAGAGCTATGGACCTGGTTCTCGCACCTGTCGTGTGTGCGGAAATCCCCATGGGTTGATCAGAAAGTATGGACTTATGTGCTGCAGACAATGCTTCCGTAGCAATGCCAAGGAAATTGGGTTCATTAAGGCAAGTGACCCGAGGCTCTCCGACGAATCCGAGCTGCTGTTTTCACCATACCCTCCTCCTTTACTTGACCATAGCTTAGTGAAAAGCTTCTTTGACTTCAGCATGCCTTTCATCTTACTCAGAGCTGCTTTGTCAATACCATTTTTACCAACTCCATTCCTCTCACTACCTCCTCTACCATTAGCAACCCTTAAGGAAGCCAGCTCCCCTTTGAGGGCCTTCAGCTCCTCAGCCATGGCTACTGCATCCCAGTCTTCCTCAGGGTTCGTCGTGGCGGATCTTGAGCTGCCGTGTGACCCACTTGTTAGATCCTTGATCCCTTTAGGTAGGTCGGGAGTGCTGCTGCCTGATGACGCCGACGCCCTGACTTGCTCGAAAAATAATACCTGCACAACCATACGTAGAGGGAGC

Protein sequence

MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKASDPRLSDESELLFSPYPPPLLDHSLVKSFFDFSMPFILLRAALSIPFLPTPFLSLPPLPLATLKEASSPLRAFSSSAMATASQSSSGFVVADLELPCDPLVRSLIPLGRSGVLLPDDADALTCSKNNTCTTIRRGS

Homology

[Close]

BLAST of Carg19680 vs. NCBI nr
Match: KGN52774.1 (hypothetical protein Csa_4G000930 [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 2.9e-26
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS 57
          MGHSNVWNSHPK+YGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS 56

[Close]

BLAST of Carg19680 vs. NCBI nr
Match: POF26576.1 (40s ribosomal protein s29 [Quercus suber])

HSP 1 Score: 127.5 bits (319), Expect = 4.9e-26
Identity = 58/71 (81.69%), Postives = 61/71 (85.92%), Query Frame = 0


Query: 1   MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKASDPRL 60
           MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK   P+ 
Sbjct: 38  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKRFWPK- 97

Query: 61  SDESELLFSPY 72
            D   L+ S +
Sbjct: 98  QDPIRLVLSKF 107

[Close]

BLAST of Carg19680 vs. NCBI nr
Match: KDP41637.1 (hypothetical protein JCGZ_16044 [Jatropha curcas])

HSP 1 Score: 126.7 bits (317), Expect = 8.4e-26
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS 57
          MGHSNVWNSHPK+YGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK S
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVS 56

[Close]

BLAST of Carg19680 vs. NCBI nr
Match: OAY23015.1 (hypothetical protein MANES_18G044900 [Manihot esculenta])

HSP 1 Score: 126.7 bits (317), Expect = 8.4e-26
Identity = 55/64 (85.94%), Postives = 58/64 (90.62%), Query Frame = 0


Query: 1  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKASDPRL 60
          MGHSNVWNSHPK+YGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK     +
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVFVKEM 60

Query: 61 SDES 65
           +ES
Sbjct: 61 VNES 64

[Close]

BLAST of Carg19680 vs. NCBI nr
Match: XP_007157215.1 (hypothetical protein PHAVU_002G052200g, partial [Phaseolus vulgaris] >ESW29209.1 hypothetical protein PHAVU_002G052200g, partial [Phaseolus vulgaris])

HSP 1 Score: 126.3 bits (316), Expect = 1.1e-25
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 55
          MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
Sbjct: 2  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 55

[Close]

BLAST of Carg19680 vs. TAIR10
Match: AT3G43980.1 (Ribosomal protein S14p/S29e family protein)

HSP 1 Score: 116.7 bits (291), Expect = 1.6e-26
Identity = 50/54 (92.59%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 1  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 55
          MGHSNVWNSHPK YGPGSR CRVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Sbjct: 1  MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54

[Close]

BLAST of Carg19680 vs. TAIR10
Match: AT3G44010.1 (Ribosomal protein S14p/S29e family protein)

HSP 1 Score: 116.7 bits (291), Expect = 1.6e-26
Identity = 50/54 (92.59%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 1  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 55
          MGHSNVWNSHPK YGPGSR CRVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Sbjct: 1  MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54

[Close]

BLAST of Carg19680 vs. TAIR10
Match: AT4G33865.1 (Ribosomal protein S14p/S29e family protein)

HSP 1 Score: 116.7 bits (291), Expect = 1.6e-26
Identity = 50/54 (92.59%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 1  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 55
          MGHSNVWNSHPK YGPGSR CRVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Sbjct: 1  MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54

[Close]

BLAST of Carg19680 vs. Swiss-Prot
Match: sp|Q680P8|RS29_ARATH (40S ribosomal protein S29 OS=Arabidopsis thaliana OX=3702 GN=RPS29A PE=3 SV=2)

HSP 1 Score: 116.7 bits (291), Expect = 2.8e-25
Identity = 50/54 (92.59%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 1  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 55
          MGHSNVWNSHPK YGPGSR CRVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Sbjct: 1  MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54

[Close]

BLAST of Carg19680 vs. Swiss-Prot
Match: sp|Q5I7K3|RS29_WHEAT (40S ribosomal protein S29 OS=Triticum aestivum OX=4565 GN=RPS29 PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.8e-24
Identity = 48/54 (88.89%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 1  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 55
          MGHSNVWNSHPK+YG GSR CRVCGN HGLIRKYGLMCCRQCFRS+AK+IGFIK
Sbjct: 1  MGHSNVWNSHPKNYGAGSRVCRVCGNSHGLIRKYGLMCCRQCFRSDAKDIGFIK 54

[Close]

BLAST of Carg19680 vs. Swiss-Prot
Match: sp|Q7XYB0|RS29_GRIJA (40S ribosomal protein S29 OS=Griffithsia japonica OX=83288 GN=RPS29 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.0e-18
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 1  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 55
          MGH N+W SHP+ YG GSR+C++CGN HGLIRKY +  CRQCFR  AK+IGFIK
Sbjct: 1  MGHQNIWYSHPRKYGKGSRSCKICGNKHGLIRKYSMNICRQCFREYAKDIGFIK 54

[Close]

BLAST of Carg19680 vs. Swiss-Prot
Match: sp|Q4PM47|RS29_IXOSC (40S ribosomal protein S29 OS=Ixodes scapularis OX=6945 GN=RpS29 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-17
Identity = 38/54 (70.37%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 1  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 55
          MGH N+W SHP+ YGPGSR CRVC N HGLIRKYGL  CR+CFR  A +IGF K
Sbjct: 1  MGHENIWYSHPRKYGPGSRYCRVCANHHGLIRKYGLNICRRCFRQYAADIGFKK 54

[Close]

BLAST of Carg19680 vs. Swiss-Prot
Match: sp|Q6F473|RS29_PLUXY (40S ribosomal protein S29 OS=Plutella xylostella OX=51655 GN=RpS29 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.8e-17
Identity = 37/54 (68.52%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 1  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 55
          MGH+N+W SHP+ YG GSR+CR C N HGLIRKYGL  CRQCFR  A +IGF K
Sbjct: 1  MGHANIWYSHPRKYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYANDIGFKK 54

[Close]

BLAST of Carg19680 vs. TrEMBL
Match: tr|A0A0A0KV31|A0A0A0KV31_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000930 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.9e-26
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS 57
          MGHSNVWNSHPK+YGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS 56

[Close]

BLAST of Carg19680 vs. TrEMBL
Match: tr|A0A2P4N9W8|A0A2P4N9W8_QUESU (40s ribosomal protein s29 OS=Quercus suber OX=58331 GN=CFP56_65091 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.2e-26
Identity = 58/71 (81.69%), Postives = 61/71 (85.92%), Query Frame = 0


Query: 1   MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKASDPRL 60
           MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK   P+ 
Sbjct: 38  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKRFWPK- 97

Query: 61  SDESELLFSPY 72
            D   L+ S +
Sbjct: 98  QDPIRLVLSKF 107

[Close]

BLAST of Carg19680 vs. TrEMBL
Match: tr|F6HXU9|F6HXU9_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_09s0002g00970 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 5.5e-26
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS 57
          MGHSNVWNSHPK+YGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK S
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVS 56

[Close]

BLAST of Carg19680 vs. TrEMBL
Match: tr|A0A067KZM9|A0A067KZM9_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_16044 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 5.5e-26
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS 57
          MGHSNVWNSHPK+YGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK S
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVS 56

[Close]

BLAST of Carg19680 vs. TrEMBL
Match: tr|A0A2C9U073|A0A2C9U073_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_18G044900 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 5.5e-26
Identity = 55/64 (85.94%), Postives = 58/64 (90.62%), Query Frame = 0


Query: 1  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKASDPRL 60
          MGHSNVWNSHPK+YGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK     +
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVFVKEM 60

Query: 61 SDES 65
           +ES
Sbjct: 61 VNES 64

The following BLAST results are available for this feature:

BLAST of Carg19680 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52774.1	2.9e-26	98.21	hypothetical protein Csa_4G000930 [Cucumis sativus]	[more]
POF26576.1	4.9e-26	81.69	40s ribosomal protein s29 [Quercus suber]	[more]
KDP41637.1	8.4e-26	96.43	hypothetical protein JCGZ_16044 [Jatropha curcas]	[more]
OAY23015.1	8.4e-26	85.94	hypothetical protein MANES_18G044900 [Manihot esculenta]	[more]
XP_007157215.1	1.1e-25	100.00	hypothetical protein PHAVU_002G052200g, partial [Phaseolus vulgaris] >ESW29209.1...	[more]

BLAST of Carg19680 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G43980.1	1.6e-26	92.59	Ribosomal protein S14p/S29e family protein	[more]
AT3G44010.1	1.6e-26	92.59	Ribosomal protein S14p/S29e family protein	[more]
AT4G33865.1	1.6e-26	92.59	Ribosomal protein S14p/S29e family protein	[more]

BLAST of Carg19680 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q680P8\|RS29_ARATH	2.8e-25	92.59	40S ribosomal protein S29 OS=Arabidopsis thaliana OX=3702 GN=RPS29A PE=3 SV=2	[more]
sp\|Q5I7K3\|RS29_WHEAT	1.8e-24	88.89	40S ribosomal protein S29 OS=Triticum aestivum OX=4565 GN=RPS29 PE=1 SV=1	[more]
sp\|Q7XYB0\|RS29_GRIJA	2.0e-18	68.52	40S ribosomal protein S29 OS=Griffithsia japonica OX=83288 GN=RPS29 PE=3 SV=1	[more]
sp\|Q4PM47\|RS29_IXOSC	1.3e-17	70.37	40S ribosomal protein S29 OS=Ixodes scapularis OX=6945 GN=RpS29 PE=3 SV=1	[more]
sp\|Q6F473\|RS29_PLUXY	2.8e-17	68.52	40S ribosomal protein S29 OS=Plutella xylostella OX=51655 GN=RpS29 PE=3 SV=1	[more]

BLAST of Carg19680 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KV31\|A0A0A0KV31_CUCSA	1.9e-26	98.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000930 PE=4 SV=1	[more]
tr\|A0A2P4N9W8\|A0A2P4N9W8_QUESU	3.2e-26	81.69	40s ribosomal protein s29 OS=Quercus suber OX=58331 GN=CFP56_65091 PE=4 SV=1	[more]
tr\|F6HXU9\|F6HXU9_VITVI	5.5e-26	96.43	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_09s0002g00970 PE=3 SV=...	[more]
tr\|A0A067KZM9\|A0A067KZM9_JATCU	5.5e-26	96.43	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_16044 PE=3 SV=1	[more]
tr\|A0A2C9U073\|A0A2C9U073_MANES	5.5e-26	85.94	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_18G044900 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0015935	small ribosomal subunit
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR023676	Ribosomal_S14_type-Z_arc
IPR001209	Ribosomal_S14

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19680-RA	Carg19680-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:4.10.830.10		coord: 1..55 e-value: 3.7E-32 score: 111.9
None	No IPR available	PANTHER	PTHR12010:SF9	SUBFAMILY NOT NAMED	coord: 1..66
None	No IPR available	PANTHER	PTHR12010	40S RIBOSOMAL PROTEIN S29	coord: 1..66
IPR001209	Ribosomal protein S14	PFAM	PF00253	Ribosomal_S14	coord: 7..56 e-value: 6.4E-17 score: 61.0
IPR023676	Ribosomal protein S14, type Z, archaeal	HAMAP	MF_01364_A	Ribosomal_S14_2_A	coord: 2..57 score: 16.039

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19680	Cla016086	Watermelon (97103) v1	carwmB0289
Carg19680	Csa4G000930	Cucumber (Chinese Long) v2	carcuB0322
Carg19680	Csa7G071460	Cucumber (Chinese Long) v2	carcuB0323
Carg19680	MELO3C017993	Melon (DHL92) v3.5.1	carmeB0297
Carg19680	MELO3C018512	Melon (DHL92) v3.5.1	carmeB0295
Carg19680	CSPI07G06930	Wild cucumber (PI 183967)	carcpiB0329
Carg19680	CSPI04G00470	Wild cucumber (PI 183967)	carcpiB0328
Carg19680	Cucsa.097460	Cucumber (Gy14) v1	carcgyB0343
Carg19680	Cucsa.219230	Cucumber (Gy14) v1	carcgyB0344
Carg19680	Cucsa.352700	Cucumber (Gy14) v1	carcgyB0348
Carg19680	CmaCh04G004540	Cucurbita maxima (Rimu)	carcmaB0408
Carg19680	CmaCh19G005590	Cucurbita maxima (Rimu)	carcmaB0407
Carg19680	CmaCh11G017050	Cucurbita maxima (Rimu)	carcmaB0405
Carg19680	CmaCh16G003270	Cucurbita maxima (Rimu)	carcmaB0406
Carg19680	CmoCh04G004860	Cucurbita moschata (Rifu)	carcmoB0403
Carg19680	CmoCh16G003450	Cucurbita moschata (Rifu)	carcmoB0402
Carg19680	Lsi03G005680	Bottle gourd (USVL1VR-Ls)	carlsiB267
Carg19680	Cp4.1LG04g07680	Cucurbita pepo (Zucchini)	carcpeB0409
Carg19680	MELO3C017993.2	Melon (DHL92) v3.6.1	carmedB0308
Carg19680	MELO3C018512.2	Melon (DHL92) v3.6.1	carmedB0306
Carg19680	CsaV3_4G000420	Cucumber (Chinese Long) v3	carcucB0328
Carg19680	CsaV3_7G007910	Cucumber (Chinese Long) v3	carcucB0329
Carg19680	Cla97C10G193430	Watermelon (97103) v2	carwmbB0302
Carg19680	Cla97C02G033720	Watermelon (97103) v2	carwmbB0303
Carg19680	Cla97C05G102190	Watermelon (97103) v2	carwmbB0305

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg19680	Carg08125	Silver-seed gourd	carcarB324

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19680	Cucumber (Gy14) v2	carcgybB0309
Carg19680	Cucurbita moschata (Rifu)	carcmoB0401
Carg19680	Cucurbita pepo (Zucchini)	carcpeB0407
Carg19680	Cucurbita pepo (Zucchini)	carcpeB0408
Carg19680	Bottle gourd (USVL1VR-Ls)	carlsiB269
Carg19680	Watermelon (Charleston Gray)	carwcgB0287
Carg19680	Watermelon (Charleston Gray)	carwcgB0288
Carg19680	Watermelon (97103) v1	carwmB0287
Carg19680	Wax gourd	carwgoB0381
Carg19680	Wax gourd	carwgoB0383