CsaV3_3G040730 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G040730
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptiontRNA-splicing endonuclease, subunit Sen54
Locationchr3 : 33384738 .. 33385040 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGCTACAGATTGGGAAAGCTCATCAGGAGGAGCTAGTGGTGATGACGACAATTACGAGCAAGACATAAAAGATGAAGAAGAACGTCTCTTCGCATCTGGATACTTGCGCAAGCTGCAGTTTAGGTTGAGAATTTCAAGAATTTGAACTCCTCCAAATCCTTCAATAGGATGTTTCTATTTGCTTATTATCAAGTGTTTGTTTCAATAATTTATTTGTCTCCCTAGGAAGCATGCTTCAACTGTTCGATGGAATGATCGAATGGGAATGGCAGAAGTTGTAGAGAACAAGAGCAGATAG

mRNA sequence

ATGGAGGCTACAGATTGGGAAAGCTCATCAGGAGGAGCTAGTGGTGATGACGACAATTACGAGCAAGACATAAAAGATGAAGAAGAACGTCTCTTCGCATCTGGATACTTGCGCAAGCTGCAGTTTAGGAAGCATGCTTCAACTGTTCGATGGAATGATCGAATGGGAATGGCAGAAGTTGTAGAGAACAAGAGCAGATAG

Coding sequence (CDS)

ATGGAGGCTACAGATTGGGAAAGCTCATCAGGAGGAGCTAGTGGTGATGACGACAATTACGAGCAAGACATAAAAGATGAAGAAGAACGTCTCTTCGCATCTGGATACTTGCGCAAGCTGCAGTTTAGGAAGCATGCTTCAACTGTTCGATGGAATGATCGAATGGGAATGGCAGAAGTTGTAGAGAACAAGAGCAGATAG

Protein sequence

MEATDWESSSGGASGDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEVVENKSR
Homology
[Close]
BLAST of CsaV3_3G040730 vs. NCBI nr
Match: KGN59498.1 (hypothetical protein Csa_3G822480 [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 1.4e-28
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1  MEATDWESSSGGASGDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEV 60
          MEATDWESSSGGASGDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEV
Sbjct: 1  MEATDWESSSGGASGDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEV 60

Query: 61 VENKSR 67
          VENKSR
Sbjct: 61 VENKSR 66

[Close]
BLAST of CsaV3_3G040730 vs. NCBI nr
Match: XP_022156818.1 (uncharacterized protein LOC111023660 [Momordica charantia])

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-20
Identity = 52/64 (81.25%), Postives = 59/64 (92.19%), Query Frame = 0 

Query: 1  MEATDWESSSGGASGDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEV 60
          MEATDWESSSGGASGDD+ YEQD++DEEE L ASG +RKLQFRKHAST RWND+MGMAEV
Sbjct: 1  MEATDWESSSGGASGDDEIYEQDVEDEEECLCASGNMRKLQFRKHASTARWNDQMGMAEV 60

Query: 61 VENK 65
          +EN+
Sbjct: 61 LENR 64

[Close]
BLAST of CsaV3_3G040730 vs. NCBI nr
Match: XP_011653726.1 (PREDICTED: uncharacterized protein LOC101210680 isoform X1 [Cucumis sativus] >KGN54460.1 hypothetical protein Csa_4G334710 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 3.1e-20
Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = 0 

Query: 1  MEATDWESSSGGAS--GDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMA 60
          MEAT+WESSSGGAS  GD+DNYEQDI DEEE L ASG LRKLQFRKHAST RWND+MGMA
Sbjct: 1  MEATNWESSSGGASDTGDEDNYEQDINDEEECLSASGCLRKLQFRKHASTARWNDQMGMA 60

Query: 61 EVVENK 65
          EV+ENK
Sbjct: 61 EVLENK 66

[Close]
BLAST of CsaV3_3G040730 vs. NCBI nr
Match: XP_011653727.1 (PREDICTED: uncharacterized protein LOC101210680 isoform X2 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 3.1e-20
Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = 0 

Query: 1  MEATDWESSSGGAS--GDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMA 60
          MEAT+WESSSGGAS  GD+DNYEQDI DEEE L ASG LRKLQFRKHAST RWND+MGMA
Sbjct: 1  MEATNWESSSGGASDTGDEDNYEQDINDEEECLSASGCLRKLQFRKHASTARWNDQMGMA 60

Query: 61 EVVENK 65
          EV+ENK
Sbjct: 61 EVLENK 66

[Close]
BLAST of CsaV3_3G040730 vs. NCBI nr
Match: XP_016902999.1 (PREDICTED: uncharacterized protein LOC103501474 [Cucumis melo])

HSP 1 Score: 102.1 bits (253), Expect = 7.7e-19
Identity = 53/66 (80.30%), Postives = 58/66 (87.88%), Query Frame = 0 

Query: 1  MEATDWESSSGGAS--GDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMA 60
          MEAT+W+SSSGGAS  GD+DNYEQDI DEEE L AS  LRKLQFRKHAST RWND+MGMA
Sbjct: 1  MEATNWKSSSGGASDTGDEDNYEQDINDEEECLSASRCLRKLQFRKHASTARWNDQMGMA 60

Query: 61 EVVENK 65
          EV+ENK
Sbjct: 61 EVLENK 66

[Close]
BLAST of CsaV3_3G040730 vs. TrEMBL
Match: tr|A0A0A0LCN1|A0A0A0LCN1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822480 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 9.3e-29
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1  MEATDWESSSGGASGDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEV 60
          MEATDWESSSGGASGDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEV
Sbjct: 1  MEATDWESSSGGASGDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEV 60

Query: 61 VENKSR 67
          VENKSR
Sbjct: 61 VENKSR 66

[Close]
BLAST of CsaV3_3G040730 vs. TrEMBL
Match: tr|A0A0A0KXV5|A0A0A0KXV5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G334710 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.1e-20
Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = 0 

Query: 1  MEATDWESSSGGAS--GDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMA 60
          MEAT+WESSSGGAS  GD+DNYEQDI DEEE L ASG LRKLQFRKHAST RWND+MGMA
Sbjct: 1  MEATNWESSSGGASDTGDEDNYEQDINDEEECLSASGCLRKLQFRKHASTARWNDQMGMA 60

Query: 61 EVVENK 65
          EV+ENK
Sbjct: 61 EVLENK 66

[Close]
BLAST of CsaV3_3G040730 vs. TrEMBL
Match: tr|A0A1S4E447|A0A1S4E447_CUCME (uncharacterized protein LOC103501474 OS=Cucumis melo OX=3656 GN=LOC103501474 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 5.1e-19
Identity = 53/66 (80.30%), Postives = 58/66 (87.88%), Query Frame = 0 

Query: 1  MEATDWESSSGGAS--GDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMA 60
          MEAT+W+SSSGGAS  GD+DNYEQDI DEEE L AS  LRKLQFRKHAST RWND+MGMA
Sbjct: 1  MEATNWKSSSGGASDTGDEDNYEQDINDEEECLSASRCLRKLQFRKHASTARWNDQMGMA 60

Query: 61 EVVENK 65
          EV+ENK
Sbjct: 61 EVLENK 66

[Close]
BLAST of CsaV3_3G040730 vs. TrEMBL
Match: tr|A0A2P4LTY7|A0A2P4LTY7_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_04798 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-09
Identity = 38/68 (55.88%), Postives = 48/68 (70.59%), Query Frame = 0 

Query: 1  MEATDWESSSGGASGDDDNYEQDIK--DEEERLFASGYLRKLQFRKHASTVRWNDRMGMA 60
          MEA DWE+SSGG+S D + Y QD K  D+EE  F SG++ K+QFRK  S   W + +GMA
Sbjct: 1  MEAVDWENSSGGSS-DTETYLQDTKYEDDEELHFTSGFISKMQFRKDKSRAHWINEIGMA 60

Query: 61 EVVENKSR 67
          EVVENK +
Sbjct: 61 EVVENKGK 67

[Close]
BLAST of CsaV3_3G040730 vs. TrEMBL
Match: tr|A0A2P4LEF6|A0A2P4LEF6_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_73670 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.8e-09
Identity = 39/68 (57.35%), Postives = 47/68 (69.12%), Query Frame = 0 

Query: 1  MEATDWESSSGGASGDDDNYEQDIK--DEEERLFASGYLRKLQFRKHASTVRWNDRMGMA 60
          MEA DWE+SSGG+S D + Y QD K  D+EE  F SG+  KLQFRK  S   W + +GMA
Sbjct: 5  MEAVDWENSSGGSS-DTEAYLQDTKYEDDEELHFTSGFTSKLQFRKDKSRAHWINEIGMA 64

Query: 61 EVVENKSR 67
          EVVENK +
Sbjct: 65 EVVENKGK 71

The following BLAST results are available for this feature:
BLAST of CsaV3_3G040730 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN59498.11.4e-28100.00hypothetical protein Csa_3G822480 [Cucumis sativus][more]
XP_022156818.11.1e-2081.25uncharacterized protein LOC111023660 [Momordica charantia][more]
XP_011653726.13.1e-2083.33PREDICTED: uncharacterized protein LOC101210680 isoform X1 [Cucumis sativus] >KG... [more]
XP_011653727.13.1e-2083.33PREDICTED: uncharacterized protein LOC101210680 isoform X2 [Cucumis sativus][more]
XP_016902999.17.7e-1980.30PREDICTED: uncharacterized protein LOC103501474 [Cucumis melo][more]
BLAST of CsaV3_3G040730 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G040730 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G040730 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LCN1|A0A0A0LCN1_CUCSA9.3e-29100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822480 PE=4 SV=1[more]
tr|A0A0A0KXV5|A0A0A0KXV5_CUCSA2.1e-2083.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G334710 PE=4 SV=1[more]
tr|A0A1S4E447|A0A1S4E447_CUCME5.1e-1980.30uncharacterized protein LOC103501474 OS=Cucumis melo OX=3656 GN=LOC103501474 PE=... [more]
tr|A0A2P4LTY7|A0A2P4LTY7_QUESU1.3e-0955.88Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_04798 PE=4 SV=1[more]
tr|A0A2P4LEF6|A0A2P4LEF6_QUESU2.8e-0957.35Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_73670 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G040730.1CsaV3_3G040730.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G040730CSPI03G38330Wild cucumber (PI 183967)cpicucB145
CsaV3_3G040730CsGy3G035870Cucumber (Gy14) v2cgybcucB117
CsaV3_3G040730Cla002926Watermelon (97103) v1cucwmB208
CsaV3_3G040730ClCG10G015700Watermelon (Charleston Gray)cucwcgB199
CsaV3_3G040730Lsi03G015550Bottle gourd (USVL1VR-Ls)cuclsiB203
CsaV3_3G040730MELO3C030712.2Melon (DHL92) v3.6.1cucmedB211
CsaV3_3G040730Cla97C10G198600Watermelon (97103) v2cucwmbB187
CsaV3_3G040730Bhi11G002396Wax gourdcucwgoB225
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G040730Silver-seed gourdcarcucB0350
CsaV3_3G040730Cucumber (Gy14) v1cgycucB523
CsaV3_3G040730Cucurbita maxima (Rimu)cmacucB0279
CsaV3_3G040730Cucurbita maxima (Rimu)cmacucB0982
CsaV3_3G040730Cucurbita moschata (Rifu)cmocucB0270
CsaV3_3G040730Cucurbita moschata (Rifu)cmocucB0965
CsaV3_3G040730Cucurbita pepo (Zucchini)cpecucB0747
CsaV3_3G040730Melon (DHL92) v3.5.1cucmeB218