CsaV3_3G039720 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G039720
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Remorin
Location	chr3 : 32631873 .. 32634642 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTAATTAAACATAATTTTTGTTAAAGAAATGTGTTCCATTATTCCACGTAGTACATTTTGTGGCTGATAATTCTCCAATTTTCACAAATTACAAAAGCCCCCTTGAAAAAACTATATTTCCAAAAAGGTCCTTTTTTCTCTTTTTTCTCTTTTTTCACTCTTTCTTTCCCAACTTCCCATTACTCTTTCAAACGCACTCTCTTTACATTTCTTCAAATTCCGTCATGTTCAACGATCAGCCACCACCATCAACTTCCACCGCCGCCCATGCCGGAGAAGATAACGAAGACGTTCAAATCCGTGATATCCACGCTCTGACCTCTCCACAGCCACCGCCGGTGAACGCCAATCGGAACCGCCGCGGGGAGGCTAATTGGGAAACCACGAGTCAAAGATCGACTTCAATTGTCAGCGAAGCTAGTAGCTCAAGCGAGAATTTCACCTCCATGAGTCGAGAGTTCAATGCTCTGGTTATTGCTGGTGCGGAGATCGGCGACGGTTATCGTCATGATCGATCGATTAACGAAGCTCCGAATAACTTGAGCCGAATTGGAGAGGAAGAGGATACTACGCCAGAGGTGGAAACGAACCCGTTAGCGATTGTACCGGATGGTCATCCGTTCGATGATCTAACAACATCGTCGGCGATCTCGAGAACGGAGAATCGCGACGGCGGTGCGGCGGCGACTAGAGAGATTTCGTTACATATGGTGAAGAAAGAGGAAGTGGAAACGAAGATTAGCGCATGGCAAAACGCGAAGATTGCGAAGATTAACAATCGGTACAAGAGAGAAGATGCTGTGATTAGTGGATGGGAAAGGGAGCAGGTTCAGAAGGCATCTTCATGGATGAAGAAGATTGAGGTACGTGATCAATACTTGAAAATAATGCCAATTTCAAATTTTTGCATGCAATCTGTTTGATGAAATGCCTACCTAGGTAGGTTATTGCATCATATTTAGTTGATTCATTGATTGATTGATGAATTTCCTCTATTCTAGATTTCCATATACTACTTTTTTTCTTCATTTACGTAATTATGATCATCACTTGGAACACTGTTTGTCAAAGTTACTTGTCAGTTTGGTTAACCAAAAAAAAAACAAAAAAGATTAAATTCATAATGCTTAGTTTTGGACTAAACATGTGAAAGCTTTTTGAATCTTGAACAGTTTTGAACAAAAAATTTCTATTTATTTCATTCTAATTTGTTAACACTTCAAAATTTAACTTCCTTTCTTTGTTTGATTCAATAGAAATTTAACTGATGATGAACCTTCAAATATGGTTTGTTTTCTTCCTCAATAAACAAACAAACAACCAAAGGAAATGCCCATTAAAAGTTTTTTTAGAATAAAAAACAGAGCAATTATTAGATATCTCAATGCCCCAACACACAAAAATAAAATTACTAAATTTTAGAAAAAAGAAAATTTCATTATGTGGGCGGAGAGATTGGAAGCATATAAAATGGATGCACCCAAAATTTCTTTTGTTAGAAATAAATGTTTGTGAAGCTTAAAATATTAATGTCACAACCTCAAAGAATATATATATTAATTGAAATAAATGTTTGCTTTCAAAAATAAAAAATAAAACAAATAAAGGTTTGTAATTGCTATATAAACAAATAAAACAAAAATAATAAATAATAATAAATGGGTTTAATGAATTTTGTTATATTTTATAAATAATTTTAATATTTTACTATTAAAAAATCCTCCTTAAATTAAATACAAAAATTAAATATTAATGTTATACATTTGTTCAATGACAAAATTCGAAGAAAAATTGCTACTCATTAGTCTATTTTTATAAACTAAAGTCCACGAACTAAGTCGTTAGGGTTTAGGACAACTAAAAATTGAGAGTAAAAATGAAAGTATGTTTGTGGTTTGATAAAACCTTTCATAAATGGAAACTATTTATAAGGATTAAGTTGTAACTTCTAAAATTACAGATACTAAATTCAAATTTCTTTCATACTATATAGAAACTAAATTTATAATTTAGTATAAAAACATTATTATCTTCATCATTCTATTATATGGTGGGTGAAAAGGCAGCACATTATATATGTGTGTATGTGAATATTGGATGAAGCACTAAGAATATTTTGAATATATATGGCAGAGGAAGTTGGAAGAGAAGAGAGCAAAAGCATTAGAAAAGATGGAGAATGAAGTAGCAAAAGCACATAGAAAAGCAGAGGAAAGAAGAGCATCAGCAGAGGCAAAGAGAGGAACAAAAGTGGCCAAAGTCATTGAAATTTCAAACTTGATGAGAGCTGTTGGAAGGCCACCCGCTAAGCGCTCGTTCTTCTAAAAACATATTCGAAAGCTATTCTAAAACCGTTAAAGTCACTTTTGTCATACTCATCATCATGAAATCCCAATGAATTTGTAATTAATTAAGGAGATGGACAAAACCCATCTAAAAAAGAGTTAGATTTTTTTCTTCTTGAAACAAAGGAATGATATATTATTAATGCATTATCTCTCCCAAATATCAAATATCTTAGATTAAAGTTGGATTTAGTGTGAGGAAGTTGTAAGTAAGAAATGGACATTGAGTACTTTGAGTGAATGTTATTTTAAGATTTTCTTTCTTGGGTTGGTTTTGGTTGTAAGTTGTAAGTGTGTTTTTATGAGAACTTATAAGGAATAATTCATGTCCTTAGTGATCTTTTTGTATAGTAAAAGATATATGGTTGGATATTACAATTTTCTTTCCTTCATCCTTTAGTTTCATTTGTAATTCATATTTGAG

mRNA sequence

ATGTTCAACGATCAGCCACCACCATCAACTTCCACCGCCGCCCATGCCGGAGAAGATAACGAAGACGTTCAAATCCGTGATATCCACGCTCTGACCTCTCCACAGCCACCGCCGGTGAACGCCAATCGGAACCGCCGCGGGGAGGCTAATTGGGAAACCACGAGTCAAAGATCGACTTCAATTGTCAGCGAAGCTAGTAGCTCAAGCGAGAATTTCACCTCCATGAGTCGAGAGTTCAATGCTCTGGTTATTGCTGGTGCGGAGATCGGCGACGGTTATCGTCATGATCGATCGATTAACGAAGCTCCGAATAACTTGAGCCGAATTGGAGAGGAAGAGGATACTACGCCAGAGGTGGAAACGAACCCGTTAGCGATTGTACCGGATGGTCATCCGTTCGATGATCTAACAACATCGTCGGCGATCTCGAGAACGGAGAATCGCGACGGCGGTGCGGCGGCGACTAGAGAGATTTCGTTACATATGGTGAAGAAAGAGGAAGTGGAAACGAAGATTAGCGCATGGCAAAACGCGAAGATTGCGAAGATTAACAATCGGTACAAGAGAGAAGATGCTGTGATTAGTGGATGGGAAAGGGAGCAGGTTCAGAAGGCATCTTCATGGATGAAGAAGATTGAGAGGAAGTTGGAAGAGAAGAGAGCAAAAGCATTAGAAAAGATGGAGAATGAAGTAGCAAAAGCACATAGAAAAGCAGAGGAAAGAAGAGCATCAGCAGAGGCAAAGAGAGGAACAAAAGTGGCCAAAGTCATTGAAATTTCAAACTTGATGAGAGCTGTTGGAAGGCCACCCGCTAAGCGCTCGTTCTTCTAA

Coding sequence (CDS)

ATGTTCAACGATCAGCCACCACCATCAACTTCCACCGCCGCCCATGCCGGAGAAGATAACGAAGACGTTCAAATCCGTGATATCCACGCTCTGACCTCTCCACAGCCACCGCCGGTGAACGCCAATCGGAACCGCCGCGGGGAGGCTAATTGGGAAACCACGAGTCAAAGATCGACTTCAATTGTCAGCGAAGCTAGTAGCTCAAGCGAGAATTTCACCTCCATGAGTCGAGAGTTCAATGCTCTGGTTATTGCTGGTGCGGAGATCGGCGACGGTTATCGTCATGATCGATCGATTAACGAAGCTCCGAATAACTTGAGCCGAATTGGAGAGGAAGAGGATACTACGCCAGAGGTGGAAACGAACCCGTTAGCGATTGTACCGGATGGTCATCCGTTCGATGATCTAACAACATCGTCGGCGATCTCGAGAACGGAGAATCGCGACGGCGGTGCGGCGGCGACTAGAGAGATTTCGTTACATATGGTGAAGAAAGAGGAAGTGGAAACGAAGATTAGCGCATGGCAAAACGCGAAGATTGCGAAGATTAACAATCGGTACAAGAGAGAAGATGCTGTGATTAGTGGATGGGAAAGGGAGCAGGTTCAGAAGGCATCTTCATGGATGAAGAAGATTGAGAGGAAGTTGGAAGAGAAGAGAGCAAAAGCATTAGAAAAGATGGAGAATGAAGTAGCAAAAGCACATAGAAAAGCAGAGGAAAGAAGAGCATCAGCAGAGGCAAAGAGAGGAACAAAAGTGGCCAAAGTCATTGAAATTTCAAACTTGATGAGAGCTGTTGGAAGGCCACCCGCTAAGCGCTCGTTCTTCTAA

Protein sequence

MFNDQPPPSTSTAAHAGEDNEDVQIRDIHALTSPQPPPVNANRNRRGEANWETTSQRSTSIVSEASSSSENFTSMSREFNALVIAGAEIGDGYRHDRSINEAPNNLSRIGEEEDTTPEVETNPLAIVPDGHPFDDLTTSSAISRTENRDGGAAATREISLHMVKKEEVETKISAWQNAKIAKINNRYKREDAVISGWEREQVQKASSWMKKIERKLEEKRAKALEKMENEVAKAHRKAEERRASAEAKRGTKVAKVIEISNLMRAVGRPPAKRSFF

Homology

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BLAST of CsaV3_3G039720 vs. NCBI nr
Match: XP_004136616.1 (PREDICTED: remorin [Cucumis sativus] >KGN59395.1 Remorin [Cucumis sativus])

HSP 1 Score: 380.2 bits (975), Expect = 6.1e-102
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0


Query: 1   MFNDQPPPSTSTAAHAGEDNEDVQIRDIHALTSPQPPPVNANRNRRGEANWETTSQRSTS 60
           MFNDQPPPSTSTAAHAGEDNEDVQIRDIHALTSPQPPPVNANRNRRGEANWETTSQRSTS
Sbjct: 1   MFNDQPPPSTSTAAHAGEDNEDVQIRDIHALTSPQPPPVNANRNRRGEANWETTSQRSTS 60

Query: 61  IVSEASSSSENFTSMSREFNALVIAGAEIGDGYRHDRSINEAPNNLSRIGEEEDTTPEVE 120
           IVSEASSSSENFTSMSREFNALVIAGAEIGDGYRHDRSINEAPNNLSRIGEEEDTTPEVE
Sbjct: 61  IVSEASSSSENFTSMSREFNALVIAGAEIGDGYRHDRSINEAPNNLSRIGEEEDTTPEVE 120

Query: 121 TNPLAIVPDGHPFDDLTTSSAISRTENRDGGAAATREISLHMVKKEEVETKISAWQNAKI 180
           TNPLAIVPDGHPFDDLTTSSAISRTENRDGGAAATREISLHMVKKEEVETKISAWQNAKI
Sbjct: 121 TNPLAIVPDGHPFDDLTTSSAISRTENRDGGAAATREISLHMVKKEEVETKISAWQNAKI 180

Query: 181 AKINNRYKREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           AKINNRYKREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 AKINNRYKREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF 277
           XXXXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF
Sbjct: 241 XXXXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF 276

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BLAST of CsaV3_3G039720 vs. NCBI nr
Match: XP_008443194.1 (PREDICTED: remorin [Cucumis melo] >ADN33984.1 remorin [Cucumis melo subsp. melo])

HSP 1 Score: 338.2 bits (866), Expect = 2.7e-89
Identity = 259/278 (93.17%), Postives = 260/278 (93.53%), Query Frame = 0


Query: 1   MFNDQP--PPSTSTAAHAGEDNEDVQIRDIHALTSPQPPPVNANRNRRGEANWETTSQRS 60
           MFNDQP          HA EDNEDVQIRDIHALTSPQPPPV ANRNRRGEANWETTSQRS
Sbjct: 1   MFNDQPXXXXXXXXXXHAEEDNEDVQIRDIHALTSPQPPPVTANRNRRGEANWETTSQRS 60

Query: 61  TSIVSEASSSSENFTSMSREFNALVIAGAEIGDGYRHDRSINEAPNNLSRIGEEEDTTPE 120
            SI SEASSSSENFTSMSREFNALVIAGAEIGDGYRHDRSINEAPNNLSRIGEEEDTTPE
Sbjct: 61  ASIASEASSSSENFTSMSREFNALVIAGAEIGDGYRHDRSINEAPNNLSRIGEEEDTTPE 120

Query: 121 VETNPLAIVPDGHPFDDLTTSSAISRTENRDGGAAATREISLHMVKKEEVETKISAWQNA 180
           VETNPLAIVPDGHPFDDLTTS+    TENRDGGAAATREISLHMVKKEEVETKISAWQNA
Sbjct: 121 VETNPLAIVPDGHPFDDLTTSAISRATENRDGGAAATREISLHMVKKEEVETKISAWQNA 180

Query: 181 KIAKINNRYKREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           KIAKINNRYKREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 KIAKINNRYKREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF 277
           XXXXXXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF 278

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BLAST of CsaV3_3G039720 vs. NCBI nr
Match: XP_023522006.1 (remorin 4.1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023526480.1 remorin 4.1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 286.6 bits (732), Expect = 9.2e-74
Identity = 242/280 (86.43%), Postives = 246/280 (87.86%), Query Frame = 0


Query: 1   MFNDQPPPSTSTAAHAGEDNEDVQIRDIHALTSPQPPPVNANRNRRGEANWETTSQRSTS 60
           MFNDQ P  TS A+H G  N+D QIRDIHALTSPQPPPV ANRNRRGEA WETTSQRSTS
Sbjct: 1   MFNDQAPAVTSRASHGG--NDDDQIRDIHALTSPQPPPVTANRNRRGEA-WETTSQRSTS 60

Query: 61  IVSEASSSSENFTSMSREFNALVIAGAEIGDGYRHDRSINEAPNNLSRIGEEEDTTPEVE 120
           + SE   SSENFTSMSREFNALVIAGAEIGD YRHDR INEAPNNLSRI EEE  TPE E
Sbjct: 61  MASE-GGSSENFTSMSREFNALVIAGAEIGDDYRHDRPINEAPNNLSRIREEE-YTPEEE 120

Query: 121 TNPLAIVPDGHPFDDLTTSSAISRTENRDG----GAAATREISLHMVKKEEVETKISAWQ 180
            NPLAIVPDGHPFDD     AISR ENR G    G AATREISLHMVKKEEVETKISAWQ
Sbjct: 121 MNPLAIVPDGHPFDDRLAPLAISRQENRRGGGGSGTAATREISLHMVKKEEVETKISAWQ 180

Query: 181 NAKIAKINNRYKREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           NAKIAKINNR+KREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 NAKIAKINNRFKREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF 277
           XXXXXXXXXXXXXXXXXXXXX ISNLMRAVGRPPAKRSFF
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXEISNLMRAVGRPPAKRSFF 275

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BLAST of CsaV3_3G039720 vs. NCBI nr
Match: XP_022983669.1 (remorin 4.1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 283.9 bits (725), Expect = 5.9e-73
Identity = 242/278 (87.05%), Postives = 247/278 (88.85%), Query Frame = 0


Query: 1   MFNDQPPPSTSTAAHAGEDNEDVQIRDIHALTSPQPPPVNANRNRRGEANWETTSQRSTS 60
           MFNDQ P  TS A+H G+D  D QIRDIHALTSPQPPPV ANRNRRGEA WETTSQRSTS
Sbjct: 1   MFNDQAPAVTSRASHGGDD--DDQIRDIHALTSPQPPPVTANRNRRGEA-WETTSQRSTS 60

Query: 61  IVSEASSSSENFTSMSREFNALVIAGAEIGDGYRHDRSINEAPNNLSRIGEEEDTTPEVE 120
           + SE   SSENFTSMSREFNALVIAGAEIGD YR DR INEAPNNLSRI EEE  TPE E
Sbjct: 61  MASE-GGSSENFTSMSREFNALVIAGAEIGDDYRRDRPINEAPNNLSRIREEE-YTPEEE 120

Query: 121 TNPLAIVPDGHPFDDLTTSSAISRTENRDGGA--AATREISLHMVKKEEVETKISAWQNA 180
            NPLAIVPDGHPFDD     AISR ENR GG+  AATREISLHMVKKEEVETKISAWQNA
Sbjct: 121 MNPLAIVPDGHPFDDHLAPLAISRQENRRGGSGTAATREISLHMVKKEEVETKISAWQNA 180

Query: 181 KIAKINNRYKREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           KIAKINNR+KREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 KIAKINNRFKREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF 277
           XXXXXXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF 273

[Close]

BLAST of CsaV3_3G039720 vs. NCBI nr
Match: XP_022934075.1 (remorin 4.1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 283.5 bits (724), Expect = 7.8e-73
Identity = 241/279 (86.38%), Postives = 245/279 (87.81%), Query Frame = 0


Query: 1   MFNDQPPPSTSTAAHAGEDNEDVQIRDIHALTSPQPPPVNANRNRRGEANWETTSQRSTS 60
           MFNDQ P  TS A+H G  N+D QIRDIHALTSPQPPPV ANRNRRGEA WETTSQRSTS
Sbjct: 1   MFNDQAPAVTSRASHGG--NDDDQIRDIHALTSPQPPPVTANRNRRGEA-WETTSQRSTS 60

Query: 61  IVSEASSSSENFTSMSREFNALVIAGAEIGDGYRHDRSINEAPNNLSRIGEEEDTTPEVE 120
           + SE   SSENFTSMSREFNALVIAGAEIGD YRHDR INEAPNNLSRI EEE  TPE E
Sbjct: 61  MASE-GGSSENFTSMSREFNALVIAGAEIGDDYRHDRPINEAPNNLSRIREEE-YTPEEE 120

Query: 121 TNPLAIVPDGHPFDDLTTSSAISRTENRDG---GAAATREISLHMVKKEEVETKISAWQN 180
            NPLAIVPDGHPFDD     AISR E R G   G AATREISLHMVKKEEVETKISAWQN
Sbjct: 121 MNPLAIVPDGHPFDDHLAPLAISRQEYRRGGGSGTAATREISLHMVKKEEVETKISAWQN 180

Query: 181 AKIAKINNRYKREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           AKIAKINNR+KREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 AKIAKINNRFKREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF 277
           XXXXXXXXXXXXXXXXXXXX ISNLMRAVGRPPAKRSFF
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXEISNLMRAVGRPPAKRSFF 274

[Close]

BLAST of CsaV3_3G039720 vs. TAIR10
Match: AT3G57540.1 (Remorin family protein)

HSP 1 Score: 101.7 bits (252), Expect = 7.6e-22
Identity = 73/204 (35.78%), Postives = 108/204 (52.94%), Query Frame = 0


Query: 4   DQPPPSTSTAAHAGEDNED------VQIRDIHALTSPQPPPVNANRNRRGEANWETTSQR 63
           ++ P +++T+     D  D      + +RDIHA+T+           +RG      +  R
Sbjct: 8   ERSPENSTTSTTDASDRRDETPSSEIVVRDIHAMTTTTE---LTRPQQRGSGGGYLSPSR 67

Query: 64  STSIVSEASSSSENFTSMSREFNALVIAGAEIGDGYR-------HDRSINEAPNNLSRIG 123
           S +     +SS ENFT++SREFNALVIAG+ + +          H   I +  N L+RIG
Sbjct: 68  SIAFSDGTTSSGENFTTVSREFNALVIAGSSMDNNSNGTNQSGGHRDVIRDERNELTRIG 127

Query: 124 EEEDT-----TPEVETNPLAIVPDGHPFDDLTTSSAISRTENRDGGAAATREISLHMVKK 183
           E +D       PE ++NP AIVPD +   D + ++ +  +         T   S+  VK+
Sbjct: 128 ENDDVGDHGQVPEEDSNPWAIVPDDYNNRDGSENNIVLASSGGQNRMVTT--ASVQRVKR 187

Query: 184 EEVETKISAWQNAKIAKINNRYKR 190
           EEVE KI+AWQ AK+AKINNR+KR
Sbjct: 188 EEVEAKITAWQTAKVAKINNRFKR 206

[Close]

BLAST of CsaV3_3G039720 vs. TAIR10
Match: AT2G41870.1 (Remorin family protein)

HSP 1 Score: 97.1 bits (240), Expect = 1.9e-20
Identity = 74/192 (38.54%), Postives = 104/192 (54.17%), Query Frame = 0


Query: 9   STSTAAHAGEDNEDVQIRDIHALTSPQPPPVNANRNRRGEA------NWETTSQRSTSIV 68
           S    ++  ++  +  +R++HALT   P P + +R                +  RS + +
Sbjct: 10  SPDATSNDRDETPETVVREVHALT---PAPEDNSRTMTATLPPPPAFRGYFSPPRSATTM 69

Query: 69  SEASSSSENFTSMSREFNALVIAGAEIGDGYRHDRSI----NEAPNNLSRIGEEEDTTPE 128
           SE     ENFT++SREFNALVIAG+ + +     R +    +E  + L RI   EDT  E
Sbjct: 70  SE----GENFTTISREFNALVIAGSSMENNELMTRDVTQREDERQDELMRI--HEDTDHE 129

Query: 129 VETNPLAIVPDGHPFDDLTTSSAISRTENRDGGAAATREISLHMVKKEEVETKISAWQNA 188
            ETNPLAIVPD +P   L   S     ++R G        ++  VK+EEVE KI+AWQ A
Sbjct: 130 EETNPLAIVPDQYPGSGLDPGSDNGPGQSRVGS-------TVQRVKREEVEAKITAWQTA 185

Query: 189 KIAKINNRYKRE 191
           K+AKINNR+KRE
Sbjct: 190 KLAKINNRFKRE 185

[Close]

BLAST of CsaV3_3G039720 vs. Swiss-Prot
Match: sp|Q7XII4|REM41_ORYSJ (Remorin 4.1 OS=Oryza sativa subsp. japonica OX=39947 GN=REM4.1 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.4e-11
Identity = 59/150 (39.33%), Postives = 81/150 (54.00%), Query Frame = 0


Query: 50  NWETTS-QRSTSIVSEASSS--SENFTSMSREFNALV-----IAGAEIGDGYRHDRSINE 109
           +WE+ +  R TSI S  S +  SE F +MSREF+A+V                   S   
Sbjct: 84  SWESAAGSRHTSIRSVGSDTAPSELFPTMSREFSAMVXXXXXXXXXXXXXXXXXXXSRAG 143

Query: 110 APNNLSRIGEEEDTTPEVETNPLAIVPDGHPFDDLTTS--SAISRTENRDGGAAATREIS 169
             + L RIGE+E      ETNPLAIVPD +P      +  +  +  +    G     E+S
Sbjct: 144 VDDALGRIGEDE----LEETNPLAIVPDSNPIPSPRRAHLALPAPGDVSSAGGGHGDEVS 203

Query: 170 LHMVKKEEVETKISAWQNAKIAKINNRYKR 190
           +  VKKEEVE+KI+AWQ A++AK+NNR+KR
Sbjct: 204 VGQVKKEEVESKIAAWQIAEVAKVNNRFKR 229

[Close]

BLAST of CsaV3_3G039720 vs. TrEMBL
Match: tr|A0A0A0LBJ6|A0A0A0LBJ6_CUCSA (Remorin OS=Cucumis sativus OX=3659 GN=Csa_3G816080 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 4.0e-102
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0


Query: 1   MFNDQPPPSTSTAAHAGEDNEDVQIRDIHALTSPQPPPVNANRNRRGEANWETTSQRSTS 60
           MFNDQPPPSTSTAAHAGEDNEDVQIRDIHALTSPQPPPVNANRNRRGEANWETTSQRSTS
Sbjct: 1   MFNDQPPPSTSTAAHAGEDNEDVQIRDIHALTSPQPPPVNANRNRRGEANWETTSQRSTS 60

Query: 61  IVSEASSSSENFTSMSREFNALVIAGAEIGDGYRHDRSINEAPNNLSRIGEEEDTTPEVE 120
           IVSEASSSSENFTSMSREFNALVIAGAEIGDGYRHDRSINEAPNNLSRIGEEEDTTPEVE
Sbjct: 61  IVSEASSSSENFTSMSREFNALVIAGAEIGDGYRHDRSINEAPNNLSRIGEEEDTTPEVE 120

Query: 121 TNPLAIVPDGHPFDDLTTSSAISRTENRDGGAAATREISLHMVKKEEVETKISAWQNAKI 180
           TNPLAIVPDGHPFDDLTTSSAISRTENRDGGAAATREISLHMVKKEEVETKISAWQNAKI
Sbjct: 121 TNPLAIVPDGHPFDDLTTSSAISRTENRDGGAAATREISLHMVKKEEVETKISAWQNAKI 180

Query: 181 AKINNRYKREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           AKINNRYKREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 AKINNRYKREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF 277
           XXXXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF
Sbjct: 241 XXXXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF 276

[Close]

BLAST of CsaV3_3G039720 vs. TrEMBL
Match: tr|A0A1S3B6Z9|A0A1S3B6Z9_CUCME (remorin OS=Cucumis melo OX=3656 GN=LOC103486850 PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 1.8e-89
Identity = 259/278 (93.17%), Postives = 260/278 (93.53%), Query Frame = 0


Query: 1   MFNDQP--PPSTSTAAHAGEDNEDVQIRDIHALTSPQPPPVNANRNRRGEANWETTSQRS 60
           MFNDQP          HA EDNEDVQIRDIHALTSPQPPPV ANRNRRGEANWETTSQRS
Sbjct: 1   MFNDQPXXXXXXXXXXHAEEDNEDVQIRDIHALTSPQPPPVTANRNRRGEANWETTSQRS 60

Query: 61  TSIVSEASSSSENFTSMSREFNALVIAGAEIGDGYRHDRSINEAPNNLSRIGEEEDTTPE 120
            SI SEASSSSENFTSMSREFNALVIAGAEIGDGYRHDRSINEAPNNLSRIGEEEDTTPE
Sbjct: 61  ASIASEASSSSENFTSMSREFNALVIAGAEIGDGYRHDRSINEAPNNLSRIGEEEDTTPE 120

Query: 121 VETNPLAIVPDGHPFDDLTTSSAISRTENRDGGAAATREISLHMVKKEEVETKISAWQNA 180
           VETNPLAIVPDGHPFDDLTTS+    TENRDGGAAATREISLHMVKKEEVETKISAWQNA
Sbjct: 121 VETNPLAIVPDGHPFDDLTTSAISRATENRDGGAAATREISLHMVKKEEVETKISAWQNA 180

Query: 181 KIAKINNRYKREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           KIAKINNRYKREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 KIAKINNRYKREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF 277
           XXXXXXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF 278

[Close]

BLAST of CsaV3_3G039720 vs. TrEMBL
Match: tr|E5GBY5|E5GBY5_CUCME (Remorin OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 1.8e-89
Identity = 259/278 (93.17%), Postives = 260/278 (93.53%), Query Frame = 0


Query: 1   MFNDQP--PPSTSTAAHAGEDNEDVQIRDIHALTSPQPPPVNANRNRRGEANWETTSQRS 60
           MFNDQP          HA EDNEDVQIRDIHALTSPQPPPV ANRNRRGEANWETTSQRS
Sbjct: 1   MFNDQPXXXXXXXXXXHAEEDNEDVQIRDIHALTSPQPPPVTANRNRRGEANWETTSQRS 60

Query: 61  TSIVSEASSSSENFTSMSREFNALVIAGAEIGDGYRHDRSINEAPNNLSRIGEEEDTTPE 120
            SI SEASSSSENFTSMSREFNALVIAGAEIGDGYRHDRSINEAPNNLSRIGEEEDTTPE
Sbjct: 61  ASIASEASSSSENFTSMSREFNALVIAGAEIGDGYRHDRSINEAPNNLSRIGEEEDTTPE 120

Query: 121 VETNPLAIVPDGHPFDDLTTSSAISRTENRDGGAAATREISLHMVKKEEVETKISAWQNA 180
           VETNPLAIVPDGHPFDDLTTS+    TENRDGGAAATREISLHMVKKEEVETKISAWQNA
Sbjct: 121 VETNPLAIVPDGHPFDDLTTSAISRATENRDGGAAATREISLHMVKKEEVETKISAWQNA 180

Query: 181 KIAKINNRYKREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           KIAKINNRYKREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 KIAKINNRYKREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF 277
           XXXXXXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF 278

[Close]

BLAST of CsaV3_3G039720 vs. TrEMBL
Match: tr|A0A251NAQ6|A0A251NAQ6_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G064800 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 3.3e-35
Identity = 188/294 (63.95%), Postives = 215/294 (73.13%), Query Frame = 0


Query: 3   NDQPPPSTSTAAHAGEDNEDVQ-IRDIHALTSPQPPPVNANRNRRGEANWETTSQRSTSI 62
           NDQ   ++       +  ED Q IRDIHALT P  PP  ANR RR EA WET+S RS+S+
Sbjct: 2   NDQGAGTSQGIQDHDDHVEDEQIIRDIHALTPPHAPPQLANRGRRREA-WETSSHRSSSL 61

Query: 63  --VSEASSSSENFTSMSREFNALVIAGAEIGDG---YRHDRSINEAPNNLSRIGEEEDTT 122
              S   + SENF+S+SREF+ALV+AG+ IG       +D ++N   NNL RIG EED  
Sbjct: 62  SMASSEGAPSENFSSISREFSALVVAGSAIGTNNSTNENDSAVNHGNNNLGRIG-EEDNM 121

Query: 123 PEVETNPLAIVPDGH-PFDDLT-------------TSSAISRTENRDGGAAATREISLHM 182
           PE E NPLAIVPD + P D +              +SS+I+ T++  GG    + IS+H 
Sbjct: 122 PEEELNPLAIVPDNYNPSDPIASPRQAGARNYAVGSSSSIAGTQDHQGG---DQVISVHR 181

Query: 183 VKKEEVETKISAWQNAKIAKINNRYKREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 242
           VKKEEVETKISAWQN KIAK+NNR+KREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 182 VKKEEVETKISAWQNNKIAKLNNRFKREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 241

Query: 243 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF 277
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  NLMRAVGR PAK+SFF
Sbjct: 242 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLMRAVGRAPAKKSFF 290

[Close]

BLAST of CsaV3_3G039720 vs. TrEMBL
Match: tr|A0A068VG41|A0A068VG41_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00004146001 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.8e-34
Identity = 103/195 (52.82%), Postives = 133/195 (68.21%), Query Frame = 0


Query: 3   NDQPPPSTSTAAHAGEDNEDVQIRDIHALTSPQPPPVNANRNRRGEANWETTSQRSTSI- 62
           NDQ   +T T+    ++ ED  IRDIHALT P+PP  +ANR+R     WET S RS+S+ 
Sbjct: 2   NDQRTIAT-TSRDEEQEPEDDHIRDIHALTPPRPP--SANRSR----PWETNSHRSSSLS 61

Query: 63  VSEASSSSENFTSMSREFNALVIAGAEI-GDGYRHDRSINEAPNNLSRIGEEEDTTPEVE 122
           ++   +SSENF+SMSREFNALV+AG+ I  +G   D ++N + NNL RIGEEE   PE E
Sbjct: 62  MASEGASSENFSSMSREFNALVLAGSTIANNGSEVDGTVNSSNNNLGRIGEEE--IPE-E 121

Query: 123 TNPLAIVPDGHPFDDLTTSSAISRTENRDGGAAAT-----REISLHMVKKEEVETKISAW 182
           TNPLAIVPD HP   LT+S        R+G + +      RE+S+  VKKEEVE+KI+AW
Sbjct: 122 TNPLAIVPDPHPLGPLTSS------PRREGASESLAHGNHREVSIQRVKKEEVESKINAW 180

Query: 183 QNAKIAKINNRYKRE 191
           Q AK+AK+NNR+KRE
Sbjct: 182 QTAKVAKVNNRFKRE 180

The following BLAST results are available for this feature:

BLAST of CsaV3_3G039720 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136616.1	6.1e-102	100.00	PREDICTED: remorin [Cucumis sativus] >KGN59395.1 Remorin [Cucumis sativus]	[more]
XP_008443194.1	2.7e-89	93.17	PREDICTED: remorin [Cucumis melo] >ADN33984.1 remorin [Cucumis melo subsp. melo]	[more]
XP_023522006.1	9.2e-74	86.43	remorin 4.1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023526480.1 remorin...	[more]
XP_022983669.1	5.9e-73	87.05	remorin 4.1-like isoform X2 [Cucurbita maxima]	[more]
XP_022934075.1	7.8e-73	86.38	remorin 4.1-like isoform X2 [Cucurbita moschata]	[more]

BLAST of CsaV3_3G039720 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G57540.1	7.6e-22	35.78	Remorin family protein	[more]
AT2G41870.1	1.9e-20	38.54	Remorin family protein	[more]

BLAST of CsaV3_3G039720 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q7XII4\|REM41_ORYSJ	3.4e-11	39.33	Remorin 4.1 OS=Oryza sativa subsp. japonica OX=39947 GN=REM4.1 PE=1 SV=1	[more]

BLAST of CsaV3_3G039720 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LBJ6\|A0A0A0LBJ6_CUCSA	4.0e-102	100.00	Remorin OS=Cucumis sativus OX=3659 GN=Csa_3G816080 PE=4 SV=1	[more]
tr\|A0A1S3B6Z9\|A0A1S3B6Z9_CUCME	1.8e-89	93.17	remorin OS=Cucumis melo OX=3656 GN=LOC103486850 PE=4 SV=1	[more]
tr\|E5GBY5\|E5GBY5_CUCME	1.8e-89	93.17	Remorin OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A251NAQ6\|A0A251NAQ6_PRUPE	3.3e-35	63.95	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G064800 PE=4 SV=1	[more]
tr\|A0A068VG41\|A0A068VG41_COFCA	2.8e-34	52.82	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00004146001 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005516	Remorin_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G039720.1	CsaV3_3G039720.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 209..248
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 231..250
None	No IPR available	PANTHER	PTHR31471	FAMILY NOT NAMED	coord: 12..276
None	No IPR available	PANTHER	PTHR31471:SF7	DNA BINDING PROTEIN-RELATED	coord: 12..276
IPR005516	Remorin, C-terminal	PFAM	PF03763	Remorin_C	coord: 167..271 e-value: 1.4E-29 score: 102.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G039720	CSPI03G37370	Wild cucumber (PI 183967)	cpicucB145
CsaV3_3G039720	Cucsa.337370	Cucumber (Gy14) v1	cgycucB523
CsaV3_3G039720	CmaCh14G004760	Cucurbita maxima (Rimu)	cmacucB0279
CsaV3_3G039720	CmaCh06G000520	Cucurbita maxima (Rimu)	cmacucB0976
CsaV3_3G039720	CmoCh14G004810	Cucurbita moschata (Rifu)	cmocucB0270
CsaV3_3G039720	CmoCh06G000430	Cucurbita moschata (Rifu)	cmocucB0962
CsaV3_3G039720	Cp4.1LG03g04130	Cucurbita pepo (Zucchini)	cpecucB0747
CsaV3_3G039720	Cp4.1LG08g13480	Cucurbita pepo (Zucchini)	cpecucB1060
CsaV3_3G039720	CsGy3G034870	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G039720	Carg01274	Silver-seed gourd	carcucB0178
CsaV3_3G039720	Carg03516	Silver-seed gourd	carcucB0279
CsaV3_3G039720	Cla017458	Watermelon (97103) v1	cucwmB208
CsaV3_3G039720	MELO3C009714	Melon (DHL92) v3.5.1	cucmeB218
CsaV3_3G039720	ClCG10G016620	Watermelon (Charleston Gray)	cucwcgB199
CsaV3_3G039720	Lsi03G016540	Bottle gourd (USVL1VR-Ls)	cuclsiB203
CsaV3_3G039720	MELO3C009714.2	Melon (DHL92) v3.6.1	cucmedB211
CsaV3_3G039720	Cla97C10G199510	Watermelon (97103) v2	cucwmbB187
CsaV3_3G039720	Bhi11G002283	Wax gourd	cucwgoB227

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G039720	Wax gourd	cucwgoB338
CsaV3_3G039720	Cucurbita maxima (Rimu)	cmacucB0791
CsaV3_3G039720	Cucurbita pepo (Zucchini)	cpecucB0072
CsaV3_3G039720	Cucurbita pepo (Zucchini)	cpecucB0761
CsaV3_3G039720	Bottle gourd (USVL1VR-Ls)	cuclsiB182