Carg01274 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg01274
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Remorin
Location	Cucurbita_argyrosperma_scaffold_002 : 1888727 .. 1890485 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTATATTCTCAAAGGGACTTTTTCTCTCTTTCCCCTTCCTTCACTCAAAATCTTCTCATTACTCATAAAAACACTCTCTGCATTTCTTCAATTCCCACCATGTTCAACGATCAAGCACTACCAGCAGGAACCTCCAGACCTACTCATGCCGGAGGCGATGAAGATCAAATCCGCGAAATCCACGCTCTGATTCCCACACCACCACCGCCGGTGACGGAGAATCGGAACCGCCGCGGAGAGGCTTGGGAAACGGCGAGCCAGAGATCGACTTCAATGGCGAGCGAAGGCGCTTCCAGTGAGAATTTTACTTCCATAAGTAGAGAGTTCAATGCTCTGGTGATCGCCGGCGCGGAGATTGGTGACGGTTATCGCCAGGACCGGCCGATTAACGAAGCTCCGAATAACTTGGGCAGGATTGGAGAGGAAGATCAGGCTACGCCTGAGGAGGAGACGAATCCGTTAGCGATCGTGCCGGACGGTCATCCGTTTGATGATCAATTAACGCCGTCGTCAATCACAAGACAGGAGAACAATAGCGGCGGAGGAGCAGCTGCGACAAGAGAGATTTCGTTGCAGATGGTGAAGAAGGAGGAGGTGGAGACGAAGATTAGCGCATGGCAGAACGCGAAGATTGCGAAGATTAACAATCGGTTCAAGAGAGAAGATGCAGTGATCAGTGGATGGGAGAGGGAGCAGGTTCAGAAGGCATCTTCATGGATGAAGAAGGTCGAGGTACGTGATTTGAAATTGAAAATGGCGATTTCTGTTTGAAGAAATGCGTTGTGTTAGTTGATGGATTGATTCAATAATTAATTGCTCTACTTTGTTTTTAGAGGTCATTCATAATCAATTAGTTATTGCATGAGTGTGTGGTTGAACATGTGAACGTTTTTTTCAATCTGATTCACTTTTTAACCACAACTTTCCTTCCTATTTCATTCTACTTTTTCACCTTTTCAATATTCTATTTTTCTCTCTCTAAAATCTGAGTAAAAAACACGTTTAGTTTTACTGTCCTTTTTTTAAAAATTCCTTTGGTTGATTCTTCAATACAAGTCTAGATTCATTTGAAACCTAACGCATCATCTACTACAAGAAGTGAAAATCACTTTTGATTTCTAAATTTTTTGTGAAACTAATAGCGTGCTTCTGGGATGTAGAACAATTTAGTTTTAAACTCAGCTGTTCACTTTAAATTCTGCCACACTTTGTTTGTTATAGTGAGACATATTATTCAAATCATTAATTTGATACCAAATGTGTTAAGAAACCATGTTACCTAATAACCAAAATTAACACTTAATTTAGATGAGAGTTTTCATAGTAGATGATTAAGTTAAATAAAAATAACATGAAAATTTGGAAGTTAAAAAGAATGAACATATAGTTCCATGATTCATACATTATGAATGGGATGAAGTGAGAATTTGAATATGTGCAGAGGAGGTTGGAAGAGAGGAGGGCAAAAGCGCTTGAAAAGATGGAGAATGAAGTAGCGAAGGCGCGCAGAAAAGCAGAGGAAAGAAGAGCATCGGCTGAGGCCAAGAGGGGAACAAAAGTTGCGAAGGTCATTGAAATATCAAACTTGATGAGAGCAGTTGGAAGGCCACCAGCCAAGCGCTCCTTCTTCTGAATTCCTCTCTCTTTTGATGAGAGCAGTTGGAATTTGTTTCTCTTTGTAATTAATTAAGGAGATGGATAATCAAAACCCTCCAAAAACAGTTTTACATTTTTCTTTTACTTGAAAGAACAAAGGA

mRNA sequence

AATTATATTCTCAAAGGGACTTTTTCTCTCTTTCCCCTTCCTTCACTCAAAATCTTCTCATTACTCATAAAAACACTCTCTGCATTTCTTCAATTCCCACCATGTTCAACGATCAAGCACTACCAGCAGGAACCTCCAGACCTACTCATGCCGGAGGCGATGAAGATCAAATCCGCGAAATCCACGCTCTGATTCCCACACCACCACCGCCGGTGACGGAGAATCGGAACCGCCGCGGAGAGGCTTGGGAAACGGCGAGCCAGAGATCGACTTCAATGGCGAGCGAAGGCGCTTCCAGTGAGAATTTTACTTCCATAAGTAGAGAGTTCAATGCTCTGGTGATCGCCGGCGCGGAGATTGGTGACGGTTATCGCCAGGACCGGCCGATTAACGAAGCTCCGAATAACTTGGGCAGGATTGGAGAGGAAGATCAGGCTACGCCTGAGGAGGAGACGAATCCGTTAGCGATCGTGCCGGACGGTCATCCGTTTGATGATCAATTAACGCCGTCGTCAATCACAAGACAGGAGAACAATAGCGGCGGAGGAGCAGCTGCGACAAGAGAGATTTCGTTGCAGATGGTGAAGAAGGAGGAGGTGGAGACGAAGATTAGCGCATGGCAGAACGCGAAGATTGCGAAGATTAACAATCGGTTCAAGAGAGAAGATGCAGTGATCAGTGGATGGGAGAGGGAGCAGGTTCAGAAGGCATCTTCATGGATGAAGAAGGTCGAGAGGAGGTTGGAAGAGAGGAGGGCAAAAGCGCTTGAAAAGATGGAGAATGAAGTAGCGAAGGCGCGCAGAAAAGCAGAGGAAAGAAGAGCATCGGCTGAGGCCAAGAGGGGAACAAAAGTTGCGAAGGTCATTGAAATATCAAACTTGATGAGAGCAGTTGGAAGGCCACCAGCCAAGCGCTCCTTCTTCTGAATTCCTCTCTCTTTTGATGAGAGCAGTTGGAATTTGTTTCTCTTTGTAATTAATTAAGGAGATGGATAATCAAAACCCTCCAAAAACAGTTTTACATTTTTCTTTTACTTGAAAGAACAAAGGA

Coding sequence (CDS)

ATGTTCAACGATCAAGCACTACCAGCAGGAACCTCCAGACCTACTCATGCCGGAGGCGATGAAGATCAAATCCGCGAAATCCACGCTCTGATTCCCACACCACCACCGCCGGTGACGGAGAATCGGAACCGCCGCGGAGAGGCTTGGGAAACGGCGAGCCAGAGATCGACTTCAATGGCGAGCGAAGGCGCTTCCAGTGAGAATTTTACTTCCATAAGTAGAGAGTTCAATGCTCTGGTGATCGCCGGCGCGGAGATTGGTGACGGTTATCGCCAGGACCGGCCGATTAACGAAGCTCCGAATAACTTGGGCAGGATTGGAGAGGAAGATCAGGCTACGCCTGAGGAGGAGACGAATCCGTTAGCGATCGTGCCGGACGGTCATCCGTTTGATGATCAATTAACGCCGTCGTCAATCACAAGACAGGAGAACAATAGCGGCGGAGGAGCAGCTGCGACAAGAGAGATTTCGTTGCAGATGGTGAAGAAGGAGGAGGTGGAGACGAAGATTAGCGCATGGCAGAACGCGAAGATTGCGAAGATTAACAATCGGTTCAAGAGAGAAGATGCAGTGATCAGTGGATGGGAGAGGGAGCAGGTTCAGAAGGCATCTTCATGGATGAAGAAGGTCGAGAGGAGGTTGGAAGAGAGGAGGGCAAAAGCGCTTGAAAAGATGGAGAATGAAGTAGCGAAGGCGCGCAGAAAAGCAGAGGAAAGAAGAGCATCGGCTGAGGCCAAGAGGGGAACAAAAGTTGCGAAGGTCATTGAAATATCAAACTTGATGAGAGCAGTTGGAAGGCCACCAGCCAAGCGCTCCTTCTTCTGA

Protein sequence

MFNDQALPAGTSRPTHAGGDEDQIREIHALIPTPPPPVTENRNRRGEAWETASQRSTSMASEGASSENFTSISREFNALVIAGAEIGDGYRQDRPINEAPNNLGRIGEEDQATPEEETNPLAIVPDGHPFDDQLTPSSITRQENNSGGGAAATREISLQMVKKEEVETKISAWQNAKIAKINNRFKREDAVISGWEREQVQKASSWMKKVERRLEERRAKALEKMENEVAKARRKAEERRASAEAKRGTKVAKVIEISNLMRAVGRPPAKRSFF

Homology

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BLAST of Carg01274 vs. NCBI nr
Match: XP_022971493.1 (remorin 4.1-like [Cucurbita maxima])

HSP 1 Score: 339.7 bits (870), Expect = 9.0e-90
Identity = 267/274 (97.45%), Postives = 267/274 (97.45%), Query Frame = 0


Query: 1   MFNDQALPAGTSRPTHAGGDEDQIREIHALIPTPPPPVTENRNRRGEAWETASQRSTSMA 60
           MFNDQALPAGTSRPTH G DEDQIREIHAL PT PPPVTENRNRRGEAWETASQRSTSMA
Sbjct: 1   MFNDQALPAGTSRPTHGGDDEDQIREIHALTPTRPPPVTENRNRRGEAWETASQRSTSMA 60

Query: 61  SEGASSENFTSISREFNALVIAGAEIGDGYRQDRPINEAPNNLGRIGEEDQATPEEETNP 120
           SEGASSENFTSISREFNALVIAGAEIGDGYRQDRPINEAPNNL RIGEEDQATPEEETNP
Sbjct: 61  SEGASSENFTSISREFNALVIAGAEIGDGYRQDRPINEAPNNLSRIGEEDQATPEEETNP 120

Query: 121 LAIVPDGHPFDDQLTPSSITRXXXXXXXXXXXXREISLQMVKKEEVETKISAWQNAKIAK 180
           LAIVPDGHPFDDQLTPSSITR XXXXXXXXXX REISLQMVKKEEVETKISAWQNAKIAK
Sbjct: 121 LAIVPDGHPFDDQLTPSSITRQXXXXXXXXXXTREISLQMVKKEEVETKISAWQNAKIAK 180

Query: 181 INNRFKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           INNRFKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 INNRFKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF 275
           XXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF
Sbjct: 241 XXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF 274

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BLAST of Carg01274 vs. NCBI nr
Match: XP_023540943.1 (remorin 4.1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 324.7 bits (831), Expect = 3.0e-85
Identity = 260/274 (94.89%), Postives = 260/274 (94.89%), Query Frame = 0


Query: 1   MFNDQALPAGTSRPTHAGGDEDQIREIHALIPTPPPPVTENRNRRGEAWETASQRSTSMA 60
           MFNDQALPAGTSRPTHAG  EDQIREIHAL PTP   VTENRNRRGEAWETASQRSTSMA
Sbjct: 1   MFNDQALPAGTSRPTHAGDGEDQIREIHALTPTPXXXVTENRNRRGEAWETASQRSTSMA 60

Query: 61  SEGASSENFTSISREFNALVIAGAEIGDGYRQDRPINEAPNNLGRIGEEDQATPEEETNP 120
           SEGASSENFTSISREFNALVIAGAEIGDGYRQDRPINE PNNL RIGEEDQATPEEETNP
Sbjct: 61  SEGASSENFTSISREFNALVIAGAEIGDGYRQDRPINEPPNNLSRIGEEDQATPEEETNP 120

Query: 121 LAIVPDGHPFDDQLTPSSITRXXXXXXXXXXXXREISLQMVKKEEVETKISAWQNAKIAK 180
           LAIVPDGHPFDDQLT SSITR   XXXXXXXX REISLQMVKKEEVETKISAWQNAKIAK
Sbjct: 121 LAIVPDGHPFDDQLTLSSITRQENXXXXXXXXTREISLQMVKKEEVETKISAWQNAKIAK 180

Query: 181 INNRFKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           INNRFK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 INNRFKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF 275
           XXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF
Sbjct: 241 XXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF 274

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BLAST of Carg01274 vs. NCBI nr
Match: XP_022939640.1 (remorin 4.1-like [Cucurbita moschata])

HSP 1 Score: 323.9 bits (829), Expect = 5.1e-85
Identity = 263/274 (95.99%), Postives = 263/274 (95.99%), Query Frame = 0


Query: 1   MFNDQALPAGTSRPTHAGGDEDQIREIHALIPTPPPPVTENRNRRGEAWETASQRSTSMA 60
           MFNDQALPAGTSRPTHAG DEDQIREIHAL PT     TENRNRRGEAWETASQRSTSMA
Sbjct: 1   MFNDQALPAGTSRPTHAGDDEDQIREIHALTPTXXXXXTENRNRRGEAWETASQRSTSMA 60

Query: 61  SEGASSENFTSISREFNALVIAGAEIGDGYRQDRPINEAPNNLGRIGEEDQATPEEETNP 120
           SEGASSENFTSISREFNALVIAGAEIGDGYRQDRPINEAPNNL RIGEEDQATPEEETNP
Sbjct: 61  SEGASSENFTSISREFNALVIAGAEIGDGYRQDRPINEAPNNLSRIGEEDQATPEEETNP 120

Query: 121 LAIVPDGHPFDDQLTPSSITRXXXXXXXXXXXXREISLQMVKKEEVETKISAWQNAKIAK 180
           LAIVPDGHPFDDQLTPSSITRXXXXXXXXXXXXREISLQMVKKEEVETKISAWQNAKIAK
Sbjct: 121 LAIVPDGHPFDDQLTPSSITRXXXXXXXXXXXXREISLQMVKKEEVETKISAWQNAKIAK 180

Query: 181 INNRFKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           INNRFKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 INNRFKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF 275
           XXXXXXXXXXXXXXXX   LMRAVGRPPAKRSFF
Sbjct: 241 XXXXXXXXXXXXXXXXXXXLMRAVGRPPAKRSFF 274

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BLAST of Carg01274 vs. NCBI nr
Match: XP_022983669.1 (remorin 4.1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 275.8 bits (704), Expect = 1.6e-70
Identity = 231/275 (84.00%), Postives = 239/275 (86.91%), Query Frame = 0


Query: 1   MFNDQALPAGTSRPTHAGGDEDQIREIHALIPTPPPPVTENRNRRGEAWETASQRSTSMA 60
           MFNDQA PA TSR +H G D+DQIR+IHAL    PPPVT NRNRRGEAWET SQRSTSMA
Sbjct: 1   MFNDQA-PAVTSRASHGGDDDDQIRDIHALTSPQPPPVTANRNRRGEAWETTSQRSTSMA 60

Query: 61  SEGASSENFTSISREFNALVIAGAEIGDGYRQDRPINEAPNNLGRIGEEDQATPEEETNP 120
           SEG SSENFTS+SREFNALVIAGAEIGD YR+DRPINEAPNNL RI EE+  TPEEE NP
Sbjct: 61  SEGGSSENFTSMSREFNALVIAGAEIGDDYRRDRPINEAPNNLSRIREEEY-TPEEEMNP 120

Query: 121 LAIVPDGHPFDDQLTPSSITR-XXXXXXXXXXXXREISLQMVKKEEVETKISAWQNAKIA 180
           LAIVPDGHPFDD L P +I+R             REISL MVKKEEVETKISAWQNAKIA
Sbjct: 121 LAIVPDGHPFDDHLAPLAISRQENRRGGSGTAATREISLHMVKKEEVETKISAWQNAKIA 180

Query: 181 KINNRFKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           KINNRFKR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 KINNRFKREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF 275
           XXXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF
Sbjct: 241 XXXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF 273

[Close]

BLAST of Carg01274 vs. NCBI nr
Match: XP_022934075.1 (remorin 4.1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 275.4 bits (703), Expect = 2.1e-70
Identity = 230/276 (83.33%), Postives = 237/276 (85.87%), Query Frame = 0


Query: 1   MFNDQALPAGTSRPTHAGGDEDQIREIHALIPTPPPPVTENRNRRGEAWETASQRSTSMA 60
           MFNDQA PA TSR +H G D+DQIR+IHAL    PPPVT NRNRRGEAWET SQRSTSMA
Sbjct: 1   MFNDQA-PAVTSRASHGGNDDDQIRDIHALTSPQPPPVTANRNRRGEAWETTSQRSTSMA 60

Query: 61  SEGASSENFTSISREFNALVIAGAEIGDGYRQDRPINEAPNNLGRIGEEDQATPEEETNP 120
           SEG SSENFTS+SREFNALVIAGAEIGD YR DRPINEAPNNL RI EE+  TPEEE NP
Sbjct: 61  SEGGSSENFTSMSREFNALVIAGAEIGDDYRHDRPINEAPNNLSRIREEEY-TPEEEMNP 120

Query: 121 LAIVPDGHPFDDQLTPSSITR--XXXXXXXXXXXXREISLQMVKKEEVETKISAWQNAKI 180
           LAIVPDGHPFDD L P +I+R              REISL MVKKEEVETKISAWQNAKI
Sbjct: 121 LAIVPDGHPFDDHLAPLAISRQEYRRGGGSGTAATREISLHMVKKEEVETKISAWQNAKI 180

Query: 181 AKINNRFKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           AKINNRFKR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 AKINNRFKREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF 275
           XXXXXXXXXXXXXXXXX ISNLMRAVGRPPAKRSFF
Sbjct: 241 XXXXXXXXXXXXXXXXXEISNLMRAVGRPPAKRSFF 274

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BLAST of Carg01274 vs. TAIR10
Match: AT2G41870.1 (Remorin family protein)

HSP 1 Score: 98.2 bits (243), Expect = 8.3e-21
Identity = 79/183 (43.17%), Postives = 97/183 (53.01%), Query Frame = 0


Query: 21  EDQIREIHALIPT------------PPPPVTENRNRRGEAWETASQRSTSMASEGASSEN 80
           E  +RE+HAL P             PPPP       RG     +  RS +  SEG   EN
Sbjct: 23  ETVVREVHALTPAPEDNSRTMTATLPPPPAF-----RG---YFSPPRSATTMSEG---EN 82

Query: 81  FTSISREFNALVIAGAEIGDGYRQDRPI----NEAPNNLGRIGEEDQATPEEETNPLAIV 140
           FT+ISREFNALVIAG+ + +     R +    +E  + L RI E+     EEETNPLAIV
Sbjct: 83  FTTISREFNALVIAGSSMENNELMTRDVTQREDERQDELMRIHED--TDHEEETNPLAIV 142

Query: 141 PDGHPFDDQLTPSSITRXXXXXXXXXXXXREISLQMVKKEEVETKISAWQNAKIAKINNR 188
           PD +P    L P S                  ++Q VK+EEVE KI+AWQ AK+AKINNR
Sbjct: 143 PDQYP-GSGLDPGSDNGPGQSRVGS-------TVQRVKREEVEAKITAWQTAKLAKINNR 184

[Close]

BLAST of Carg01274 vs. TAIR10
Match: AT3G57540.1 (Remorin family protein)

HSP 1 Score: 92.4 bits (228), Expect = 4.5e-19
Identity = 74/192 (38.54%), Postives = 97/192 (50.52%), Query Frame = 0


Query: 11  TSRPTHAGGDEDQIREIHALIPTPPPPVTENRNRRGEAWETASQRSTSMASEGASS-ENF 70
           + R       E  +R+IHA+  T    +T  + R       +  RS + +    SS ENF
Sbjct: 22  SDRRDETPSSEIVVRDIHAM--TTTTELTRPQQRGSGGGYLSPSRSIAFSDGTTSSGENF 81

Query: 71  TSISREFNALVIAGAEIGD---------GYRQDRPINEAPNNLGRIGEEDQA-----TPE 130
           T++SREFNALVIAG+ + +         G+R    I +  N L RIGE D        PE
Sbjct: 82  TTVSREFNALVIAGSSMDNNSNGTNQSGGHRD--VIRDERNELTRIGENDDVGDHGQVPE 141

Query: 131 EETNPLAIVPDGHPFDDQLTPSSITRXXXXXXXXXXXXREISLQMVKKEEVETKISAWQN 188
           E++NP AIVPD +   D    S                   S+Q VK+EEVE KI+AWQ 
Sbjct: 142 EDSNPWAIVPDDYNNRD---GSENNIVLASSGGQNRMVTTASVQRVKREEVEAKITAWQT 201

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BLAST of Carg01274 vs. Swiss-Prot
Match: sp|Q7XII4|REM41_ORYSJ (Remorin 4.1 OS=Oryza sativa subsp. japonica OX=39947 GN=REM4.1 PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.6e-13
Identity = 59/150 (39.33%), Postives = 81/150 (54.00%), Query Frame = 0


Query: 48  AWETAS-QRSTSMASEG---ASSENFTSISREFNALVIAGAEIGDGYRQDRPINE----- 107
           +WE+A+  R TS+ S G   A SE F ++SREF+A+V                       
Sbjct: 84  SWESAAGSRHTSIRSVGSDTAPSELFPTMSREFSAMVXXXXXXXXXXXXXXXXXXXSRAG 143

Query: 108 APNNLGRIGEEDQATPEEETNPLAIVPDGHPF-DDQLTPSSITRXXXXXXXXXXXXREIS 167
             + LGRIGE++     EETNPLAIVPD +P    +    ++               E+S
Sbjct: 144 VDDALGRIGEDEL----EETNPLAIVPDSNPIPSPRRAHLALPAPGDVSSAGGGHGDEVS 203

Query: 168 LQMVKKEEVETKISAWQNAKIAKINNRFKR 188
           +  VKKEEVE+KI+AWQ A++AK+NNRFKR
Sbjct: 204 VGQVKKEEVESKIAAWQIAEVAKVNNRFKR 229

[Close]

BLAST of Carg01274 vs. TrEMBL
Match: tr|A0A0A0LBJ6|A0A0A0LBJ6_CUCSA (Remorin OS=Cucumis sativus OX=3659 GN=Csa_3G816080 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 7.3e-64
Identity = 224/278 (80.58%), Postives = 233/278 (83.81%), Query Frame = 0


Query: 1   MFNDQALPAGTSRPTHAGGDED--QIREIHALIPTPPPPVTENRNRRGEA-WETASQRST 60
           MFNDQ  P  TS   HAG D +  QIR+IHAL    PPPV  NRNRRGEA WET SQRST
Sbjct: 1   MFNDQP-PPSTSTAAHAGEDNEDVQIRDIHALTSPQPPPVNANRNRRGEANWETTSQRST 60

Query: 61  SMASE-GASSENFTSISREFNALVIAGAEIGDGYRQDRPINEAPNNLGRIGEEDQATPEE 120
           S+ SE  +SSENFTS+SREFNALVIAGAEIGDGYR DR INEAPNNL RIGEE+  TPE 
Sbjct: 61  SIVSEASSSSENFTSMSREFNALVIAGAEIGDGYRHDRSINEAPNNLSRIGEEEDTTPEV 120

Query: 121 ETNPLAIVPDGHPFDDQLTPSSITRXXXXXXXXXXXXREISLQMVKKEEVETKISAWQNA 180
           ETNPLAIVPDGHPFDD  T S+I+R            REISL MVKKEEVETKISAWQNA
Sbjct: 121 ETNPLAIVPDGHPFDDLTTSSAISR-TENRDGGAAATREISLHMVKKEEVETKISAWQNA 180

Query: 181 KIAKINNRFKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           KIAKINNR+KR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 KIAKINNRYKREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF 275
           XXXXXXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF 276

[Close]

BLAST of Carg01274 vs. TrEMBL
Match: tr|A0A1S3B6Z9|A0A1S3B6Z9_CUCME (remorin OS=Cucumis melo OX=3656 GN=LOC103486850 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.5e-61
Identity = 222/279 (79.57%), Postives = 231/279 (82.80%), Query Frame = 0


Query: 1   MFNDQ-ALPAGTSRPTHAGGDED--QIREIHALIPTPPPPVTENRNRRGEA-WETASQRS 60
           MFNDQ           HA  D +  QIR+IHAL    PPPVT NRNRRGEA WET SQRS
Sbjct: 1   MFNDQPXXXXXXXXXXHAEEDNEDVQIRDIHALTSPQPPPVTANRNRRGEANWETTSQRS 60

Query: 61  TSMASE-GASSENFTSISREFNALVIAGAEIGDGYRQDRPINEAPNNLGRIGEEDQATPE 120
            S+ASE  +SSENFTS+SREFNALVIAGAEIGDGYR DR INEAPNNL RIGEE+  TPE
Sbjct: 61  ASIASEASSSSENFTSMSREFNALVIAGAEIGDGYRHDRSINEAPNNLSRIGEEEDTTPE 120

Query: 121 EETNPLAIVPDGHPFDDQLTPSSITRXXXXXXXXXXXXREISLQMVKKEEVETKISAWQN 180
            ETNPLAIVPDGHPFDD LT S+I+R            REISL MVKKEEVETKISAWQN
Sbjct: 121 VETNPLAIVPDGHPFDD-LTTSAISRATENRDGGAAATREISLHMVKKEEVETKISAWQN 180

Query: 181 AKIAKINNRFKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           AKIAKINNR+KR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 AKIAKINNRYKREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF 275
           XXXXXXXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF 278

[Close]

BLAST of Carg01274 vs. TrEMBL
Match: tr|E5GBY5|E5GBY5_CUCME (Remorin OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.5e-61
Identity = 222/279 (79.57%), Postives = 231/279 (82.80%), Query Frame = 0


Query: 1   MFNDQ-ALPAGTSRPTHAGGDED--QIREIHALIPTPPPPVTENRNRRGEA-WETASQRS 60
           MFNDQ           HA  D +  QIR+IHAL    PPPVT NRNRRGEA WET SQRS
Sbjct: 1   MFNDQPXXXXXXXXXXHAEEDNEDVQIRDIHALTSPQPPPVTANRNRRGEANWETTSQRS 60

Query: 61  TSMASE-GASSENFTSISREFNALVIAGAEIGDGYRQDRPINEAPNNLGRIGEEDQATPE 120
            S+ASE  +SSENFTS+SREFNALVIAGAEIGDGYR DR INEAPNNL RIGEE+  TPE
Sbjct: 61  ASIASEASSSSENFTSMSREFNALVIAGAEIGDGYRHDRSINEAPNNLSRIGEEEDTTPE 120

Query: 121 EETNPLAIVPDGHPFDDQLTPSSITRXXXXXXXXXXXXREISLQMVKKEEVETKISAWQN 180
            ETNPLAIVPDGHPFDD LT S+I+R            REISL MVKKEEVETKISAWQN
Sbjct: 121 VETNPLAIVPDGHPFDD-LTTSAISRATENRDGGAAATREISLHMVKKEEVETKISAWQN 180

Query: 181 AKIAKINNRFKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           AKIAKINNR+KR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 AKIAKINNRYKREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF 275
           XXXXXXXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF 278

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BLAST of Carg01274 vs. TrEMBL
Match: tr|A0A068VG41|A0A068VG41_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00004146001 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 2.6e-37
Identity = 105/188 (55.85%), Postives = 125/188 (66.49%), Query Frame = 0


Query: 3   NDQALPAGTSRPTHAGGDEDQIREIHALIPTPPPPVTENRNRRGEAWETASQRST--SMA 62
           NDQ   A TSR      ++D IR+IHAL  TPP P + NR+R    WET S RS+  SMA
Sbjct: 2   NDQRTIATTSRDEEQEPEDDHIRDIHAL--TPPRPPSANRSR---PWETNSHRSSSLSMA 61

Query: 63  SEGASSENFTSISREFNALVIAGAEI-GDGYRQDRPINEAPNNLGRIGEEDQATPEEETN 122
           SEGASSENF+S+SREFNALV+AG+ I  +G   D  +N + NNLGRIGEE+     EETN
Sbjct: 62  SEGASSENFSSMSREFNALVLAGSTIANNGSEVDGTVNSSNNNLGRIGEEE---IPEETN 121

Query: 123 PLAIVPDGHPFDDQLTPSSITRXXXXXXXXXXXXREISLQMVKKEEVETKISAWQNAKIA 182
           PLAIVPD HP       SS  R            RE+S+Q VKKEEVE+KI+AWQ AK+A
Sbjct: 122 PLAIVPDPHPLGP--LTSSPRREGASESLAHGNHREVSIQRVKKEEVESKINAWQTAKVA 179

Query: 183 KINNRFKR 188
           K+NNRFKR
Sbjct: 182 KVNNRFKR 179

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BLAST of Carg01274 vs. TrEMBL
Match: tr|A0A251NAQ6|A0A251NAQ6_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G064800 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 4.2e-35
Identity = 188/292 (64.38%), Postives = 206/292 (70.55%), Query Frame = 0


Query: 3   NDQALPAGTSRPTHAGG----DEDQIREIHALIPTPPPPVTENRNRRGEAWETASQRSTS 62
           NDQ   AGTS+          DE  IR+IHAL P   PP   NR RR EAWET+S RS+S
Sbjct: 2   NDQG--AGTSQGIQDHDDHVEDEQIIRDIHALTPPHAPPQLANRGRRREAWETSSHRSSS 61

Query: 63  M---ASEGASSENFTSISREFNALVIAGAEIGDG---YRQDRPINEAPNNLGRIGEEDQA 122
           +   +SEGA SENF+SISREF+ALV+AG+ IG        D  +N   NNLGRIGEED  
Sbjct: 62  LSMASSEGAPSENFSSISREFSALVVAGSAIGTNNSTNENDSAVNHGNNNLGRIGEEDN- 121

Query: 123 TPEEETNPLAIVPDGH-PFDDQLTPSSI---------TRXXXXXXXXXXXXREISLQMVK 182
            PEEE NPLAIVPD + P D   +P            +             + IS+  VK
Sbjct: 122 MPEEELNPLAIVPDNYNPSDPIASPRQAGARNYAVGSSSSIAGTQDHQGGDQVISVHRVK 181

Query: 183 KEEVETKISAWQNAKIAKINNRFKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 242
           KEEVETKISAWQN KIAK+NNRFKR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 182 KEEVETKISAWQNNKIAKLNNRFKREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 241

Query: 243 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISNLMRAVGRPPAKRSFF 275
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  NLMRAVGR PAK+SFF
Sbjct: 242 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLMRAVGRAPAKKSFF 290

The following BLAST results are available for this feature:

BLAST of Carg01274 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022971493.1	9.0e-90	97.45	remorin 4.1-like [Cucurbita maxima]	[more]
XP_023540943.1	3.0e-85	94.89	remorin 4.1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022939640.1	5.1e-85	95.99	remorin 4.1-like [Cucurbita moschata]	[more]
XP_022983669.1	1.6e-70	84.00	remorin 4.1-like isoform X2 [Cucurbita maxima]	[more]
XP_022934075.1	2.1e-70	83.33	remorin 4.1-like isoform X2 [Cucurbita moschata]	[more]

BLAST of Carg01274 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G41870.1	8.3e-21	43.17	Remorin family protein	[more]
AT3G57540.1	4.5e-19	38.54	Remorin family protein	[more]

BLAST of Carg01274 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q7XII4\|REM41_ORYSJ	3.6e-13	39.33	Remorin 4.1 OS=Oryza sativa subsp. japonica OX=39947 GN=REM4.1 PE=1 SV=1	[more]

BLAST of Carg01274 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LBJ6\|A0A0A0LBJ6_CUCSA	7.3e-64	80.58	Remorin OS=Cucumis sativus OX=3659 GN=Csa_3G816080 PE=4 SV=1	[more]
tr\|A0A1S3B6Z9\|A0A1S3B6Z9_CUCME	1.5e-61	79.57	remorin OS=Cucumis melo OX=3656 GN=LOC103486850 PE=4 SV=1	[more]
tr\|E5GBY5\|E5GBY5_CUCME	1.5e-61	79.57	Remorin OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A068VG41\|A0A068VG41_COFCA	2.6e-37	55.85	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00004146001 PE=4 ...	[more]
tr\|A0A251NAQ6\|A0A251NAQ6_PRUPE	4.2e-35	64.38	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G064800 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005516	Remorin_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01274-RA	Carg01274-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 207..246
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..68
None	No IPR available	PANTHER	PTHR31471	FAMILY NOT NAMED	coord: 19..274
None	No IPR available	PANTHER	PTHR31471:SF7	DNA BINDING PROTEIN-RELATED	coord: 19..274
IPR005516	Remorin, C-terminal	PFAM	PF03763	Remorin_C	coord: 165..269 e-value: 1.1E-27 score: 96.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg01274	Cla017458	Watermelon (97103) v1	carwmB0148
Carg01274	Csa3G816080	Cucumber (Chinese Long) v2	carcuB0172
Carg01274	MELO3C009714	Melon (DHL92) v3.5.1	carmeB0163
Carg01274	ClCG10G016620	Watermelon (Charleston Gray)	carwcgB0150
Carg01274	CSPI03G37370	Wild cucumber (PI 183967)	carcpiB0178
Carg01274	Cucsa.337370	Cucumber (Gy14) v1	carcgyB0198
Carg01274	CmaCh06G000520	Cucurbita maxima (Rimu)	carcmaB0216
Carg01274	CmaCh14G004760	Cucurbita maxima (Rimu)	carcmaB0202
Carg01274	CmoCh06G000430	Cucurbita moschata (Rifu)	carcmoB0227
Carg01274	CmoCh14G004810	Cucurbita moschata (Rifu)	carcmoB0213
Carg01274	Lsi03G016540	Bottle gourd (USVL1VR-Ls)	carlsiB143
Carg01274	Cp4.1LG03g04130	Cucurbita pepo (Zucchini)	carcpeB0231
Carg01274	Cp4.1LG08g13480	Cucurbita pepo (Zucchini)	carcpeB0234
Carg01274	CsGy3G034870	Cucumber (Gy14) v2	carcgybB0167
Carg01274	MELO3C009714.2	Melon (DHL92) v3.6.1	carmedB0164
Carg01274	CsaV3_3G039720	Cucumber (Chinese Long) v3	carcucB0178
Carg01274	Cla97C10G199510	Watermelon (97103) v2	carwmbB0162
Carg01274	Bhi11G002283	Wax gourd	carwgoB0197

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg01274	Carg03516	Silver-seed gourd	carcarB182

The following block(s) are covering this gene:


Gene	Organism	Block
Carg01274	Cucurbita pepo (Zucchini)	carcpeB0229