CsaV3_3G039180 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G039180
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3 : 32214518 .. 32215243 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAGTGAGGACAATTGTTGCAAAGCGAAGATCAGAAACAAAGGCAGCGACGAACATTCTCCCATAGTGTTGTCGTTGTTGGACGAAAGATTTGAAGGGGGAAATGGTGTTTTTATAAAAATGCAAAAGACAGAGAGATTAGAGATTGAAGATCCAGAAAGTCCAAGATTATTAAGAAAAGAAATTACTATGAACAGTGCTGCAGACTACATCAGCAACGGCAGCGACGTACATTCTCCAACAGTGTCCTCCTTGTTGTTGGCAGAGATATTTGAAGGAGAAAATGATGTTTTTCTAAAAATGCAAAAGACAAAGAGATTAGAGAGCGAAGATCAAGAAAGTGCAAGATTATTAGGAAAAGAAATTACCAAGAAGAGTGCAAACAATGGCAACATCGGCAATGACGGAGACGTAAATTCTCCGACATTGTCGTCGTTGTCTGAGGAGATGATATTATCTGAAGGGGAAAATGATGTATTGCAAAAGATGCAAAAGAGATTAAAGAGTGAAGACCAAGAAAGTCCAAGAATAATAATATCAATAACAGAAAGCAAGAAGAAGAGTGAAAAAGAAGAAACTAAAGAAAGTTTGGAAAATAATTCAGAAATAATGGGGTGGATTCCAGGGATAGAGATACCAGGACCAATACCTGATATTGATCCCATTATTCAGCAGCAATTCAATCTTCATACAATTTTGGATGATCCATTCCTTGATGATTGA

mRNA sequence

ATGATGAGTGAGGACAATTGTTGCAAAGCGAAGATCAGAAACAAAGGCAGCGACGAACATTCTCCCATAGTGTTGTCGTTGTTGGACGAAAGATTTGAAGGGGGAAATGGTGTTTTTATAAAAATGCAAAAGACAGAGAGATTAGAGATTGAAGATCCAGAAAGTCCAAGATTATTAAGAAAAGAAATTACTATGAACAGTGCTGCAGACTACATCAGCAACGGCAGCGACGTACATTCTCCAACAGTGTCCTCCTTGTTGTTGGCAGAGATATTTGAAGGAGAAAATGATGTTTTTCTAAAAATGCAAAAGACAAAGAGATTAGAGAGCGAAGATCAAGAAAGTGCAAGATTATTAGGAAAAGAAATTACCAAGAAGAGTGCAAACAATGGCAACATCGGCAATGACGGAGACGTAAATTCTCCGACATTGTCGTCGTTGTCTGAGGAGATGATATTATCTGAAGGGGAAAATGATGTATTGCAAAAGATGCAAAAGAGATTAAAGAGTGAAGACCAAGAAAGTCCAAGAATAATAATATCAATAACAGAAAGCAAGAAGAAGAGTGAAAAAGAAGAAACTAAAGAAAGTTTGGAAAATAATTCAGAAATAATGGGGTGGATTCCAGGGATAGAGATACCAGGACCAATACCTGATATTGATCCCATTATTCAGCAGCAATTCAATCTTCATACAATTTTGGATGATCCATTCCTTGATGATTGA

Coding sequence (CDS)

ATGATGAGTGAGGACAATTGTTGCAAAGCGAAGATCAGAAACAAAGGCAGCGACGAACATTCTCCCATAGTGTTGTCGTTGTTGGACGAAAGATTTGAAGGGGGAAATGGTGTTTTTATAAAAATGCAAAAGACAGAGAGATTAGAGATTGAAGATCCAGAAAGTCCAAGATTATTAAGAAAAGAAATTACTATGAACAGTGCTGCAGACTACATCAGCAACGGCAGCGACGTACATTCTCCAACAGTGTCCTCCTTGTTGTTGGCAGAGATATTTGAAGGAGAAAATGATGTTTTTCTAAAAATGCAAAAGACAAAGAGATTAGAGAGCGAAGATCAAGAAAGTGCAAGATTATTAGGAAAAGAAATTACCAAGAAGAGTGCAAACAATGGCAACATCGGCAATGACGGAGACGTAAATTCTCCGACATTGTCGTCGTTGTCTGAGGAGATGATATTATCTGAAGGGGAAAATGATGTATTGCAAAAGATGCAAAAGAGATTAAAGAGTGAAGACCAAGAAAGTCCAAGAATAATAATATCAATAACAGAAAGCAAGAAGAAGAGTGAAAAAGAAGAAACTAAAGAAAGTTTGGAAAATAATTCAGAAATAATGGGGTGGATTCCAGGGATAGAGATACCAGGACCAATACCTGATATTGATCCCATTATTCAGCAGCAATTCAATCTTCATACAATTTTGGATGATCCATTCCTTGATGATTGA

Protein sequence

MMSEDNCCKAKIRNKGSDEHSPIVLSLLDERFEGGNGVFIKMQKTERLEIEDPESPRLLRKEITMNSAADYISNGSDVHSPTVSSLLLAEIFEGENDVFLKMQKTKRLESEDQESARLLGKEITKKSANNGNIGNDGDVNSPTLSSLSEEMILSEGENDVLQKMQKRLKSEDQESPRIIISITESKKKSEKEETKESLENNSEIMGWIPGIEIPGPIPDIDPIIQQQFNLHTILDDPFLDD

Homology

[Close]

BLAST of CsaV3_3G039180 vs. NCBI nr
Match: KGN59339.1 (hypothetical protein Csa_3G812110 [Cucumis sativus])

HSP 1 Score: 463.4 bits (1191), Expect = 4.8e-127
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0


Query: 1   MMSEDNCCKAKIRNKGSDEHSPIVLSLLDERFEGGNGVFIKMQKTERLEIEDPESPRLLR 60
           MMSEDNCCKAKIRNKGSDEHSPIVLSLLDERFEGGNGVFIKMQKTERLEIEDPESPRLLR
Sbjct: 1   MMSEDNCCKAKIRNKGSDEHSPIVLSLLDERFEGGNGVFIKMQKTERLEIEDPESPRLLR 60

Query: 61  KEITMNSAADYISNGSDVHSPTVSSLLLAEIFEGENDVFLKMQKTKRLESEDQESARLLG 120
           KEITMNSAADYISNGSDVHSPTVSSLLLAEIFEGENDVFLKMQKTKRLESEDQESARLLG
Sbjct: 61  KEITMNSAADYISNGSDVHSPTVSSLLLAEIFEGENDVFLKMQKTKRLESEDQESARLLG 120

Query: 121 KEITKKSANNGNIGNDGDVNSPTLSSLSEEMILSEGENDVLQKMQKRLKSEDQESPRIII 180
           KEITKKSANNGNIGNDGDVNSPTLSSLSEEMILSEGENDVLQKMQKRLKSEDQESPRIII
Sbjct: 121 KEITKKSANNGNIGNDGDVNSPTLSSLSEEMILSEGENDVLQKMQKRLKSEDQESPRIII 180

Query: 181 SITESKKKSEKEETKESLENNSEIMGWIPGIEIPGPIPDIDPIIQQQFNLHTILDDPFLD 240
           SITESKKKSEKEETKESLENNSEIMGWIPGIEIPGPIPDIDPIIQQQFNLHTILDDPFLD
Sbjct: 181 SITESKKKSEKEETKESLENNSEIMGWIPGIEIPGPIPDIDPIIQQQFNLHTILDDPFLD 240

Query: 241 D 242
           D
Sbjct: 241 D 241

[Close]

BLAST of CsaV3_3G039180 vs. TrEMBL
Match: tr|A0A0A0LEJ7|A0A0A0LEJ7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G812110 PE=4 SV=1)

HSP 1 Score: 463.4 bits (1191), Expect = 3.2e-127
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0


Query: 1   MMSEDNCCKAKIRNKGSDEHSPIVLSLLDERFEGGNGVFIKMQKTERLEIEDPESPRLLR 60
           MMSEDNCCKAKIRNKGSDEHSPIVLSLLDERFEGGNGVFIKMQKTERLEIEDPESPRLLR
Sbjct: 1   MMSEDNCCKAKIRNKGSDEHSPIVLSLLDERFEGGNGVFIKMQKTERLEIEDPESPRLLR 60

Query: 61  KEITMNSAADYISNGSDVHSPTVSSLLLAEIFEGENDVFLKMQKTKRLESEDQESARLLG 120
           KEITMNSAADYISNGSDVHSPTVSSLLLAEIFEGENDVFLKMQKTKRLESEDQESARLLG
Sbjct: 61  KEITMNSAADYISNGSDVHSPTVSSLLLAEIFEGENDVFLKMQKTKRLESEDQESARLLG 120

Query: 121 KEITKKSANNGNIGNDGDVNSPTLSSLSEEMILSEGENDVLQKMQKRLKSEDQESPRIII 180
           KEITKKSANNGNIGNDGDVNSPTLSSLSEEMILSEGENDVLQKMQKRLKSEDQESPRIII
Sbjct: 121 KEITKKSANNGNIGNDGDVNSPTLSSLSEEMILSEGENDVLQKMQKRLKSEDQESPRIII 180

Query: 181 SITESKKKSEKEETKESLENNSEIMGWIPGIEIPGPIPDIDPIIQQQFNLHTILDDPFLD 240
           SITESKKKSEKEETKESLENNSEIMGWIPGIEIPGPIPDIDPIIQQQFNLHTILDDPFLD
Sbjct: 181 SITESKKKSEKEETKESLENNSEIMGWIPGIEIPGPIPDIDPIIQQQFNLHTILDDPFLD 240

Query: 241 D 242
           D
Sbjct: 241 D 241

The following BLAST results are available for this feature:

BLAST of CsaV3_3G039180 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59339.1	4.8e-127	100.00	hypothetical protein Csa_3G812110 [Cucumis sativus]	[more]

BLAST of CsaV3_3G039180 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G039180 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G039180 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LEJ7\|A0A0A0LEJ7_CUCSA	3.2e-127	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G812110 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G039180.1	CsaV3_3G039180.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G039180	CSPI03G36850	Wild cucumber (PI 183967)	cpicucB145
CsaV3_3G039180	MELO3C009664	Melon (DHL92) v3.5.1	cucmeB218
CsaV3_3G039180	ClCG10G017210	Watermelon (Charleston Gray)	cucwcgB199
CsaV3_3G039180	MELO3C009664.2	Melon (DHL92) v3.6.1	cucmedB211

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G039180	Silver-seed gourd	carcucB0178
CsaV3_3G039180	Silver-seed gourd	carcucB0279
CsaV3_3G039180	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G039180	Cucumber (Gy14) v2	cgybcucB335
CsaV3_3G039180	Cucumber (Gy14) v1	cgycucB523
CsaV3_3G039180	Cucurbita maxima (Rimu)	cmacucB0279
CsaV3_3G039180	Cucurbita maxima (Rimu)	cmacucB0428
CsaV3_3G039180	Cucurbita maxima (Rimu)	cmacucB0976
CsaV3_3G039180	Cucurbita moschata (Rifu)	cmocucB0270
CsaV3_3G039180	Cucurbita moschata (Rifu)	cmocucB0962
CsaV3_3G039180	Cucurbita pepo (Zucchini)	cpecucB0747
CsaV3_3G039180	Cucurbita pepo (Zucchini)	cpecucB1060
CsaV3_3G039180	Bottle gourd (USVL1VR-Ls)	cuclsiB203
CsaV3_3G039180	Watermelon (97103) v1	cucwmB208
CsaV3_3G039180	Watermelon (97103) v2	cucwmbB187
CsaV3_3G039180	Wax gourd	cucwgoB227