CsaV3_3G039180.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G039180.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 32214518 .. 32215243 (+)
Sequence length726
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAGTGAGGACAATTGTTGCAAAGCGAAGATCAGAAACAAAGGCAGCGACGAACATTCTCCCATAGTGTTGTCGTTGTTGGACGAAAGATTTGAAGGGGGAAATGGTGTTTTTATAAAAATGCAAAAGACAGAGAGATTAGAGATTGAAGATCCAGAAAGTCCAAGATTATTAAGAAAAGAAATTACTATGAACAGTGCTGCAGACTACATCAGCAACGGCAGCGACGTACATTCTCCAACAGTGTCCTCCTTGTTGTTGGCAGAGATATTTGAAGGAGAAAATGATGTTTTTCTAAAAATGCAAAAGACAAAGAGATTAGAGAGCGAAGATCAAGAAAGTGCAAGATTATTAGGAAAAGAAATTACCAAGAAGAGTGCAAACAATGGCAACATCGGCAATGACGGAGACGTAAATTCTCCGACATTGTCGTCGTTGTCTGAGGAGATGATATTATCTGAAGGGGAAAATGATGTATTGCAAAAGATGCAAAAGAGATTAAAGAGTGAAGACCAAGAAAGTCCAAGAATAATAATATCAATAACAGAAAGCAAGAAGAAGAGTGAAAAAGAAGAAACTAAAGAAAGTTTGGAAAATAATTCAGAAATAATGGGGTGGATTCCAGGGATAGAGATACCAGGACCAATACCTGATATTGATCCCATTATTCAGCAGCAATTCAATCTTCATACAATTTTGGATGATCCATTCCTTGATGATTGA

mRNA sequence

ATGATGAGTGAGGACAATTGTTGCAAAGCGAAGATCAGAAACAAAGGCAGCGACGAACATTCTCCCATAGTGTTGTCGTTGTTGGACGAAAGATTTGAAGGGGGAAATGGTGTTTTTATAAAAATGCAAAAGACAGAGAGATTAGAGATTGAAGATCCAGAAAGTCCAAGATTATTAAGAAAAGAAATTACTATGAACAGTGCTGCAGACTACATCAGCAACGGCAGCGACGTACATTCTCCAACAGTGTCCTCCTTGTTGTTGGCAGAGATATTTGAAGGAGAAAATGATGTTTTTCTAAAAATGCAAAAGACAAAGAGATTAGAGAGCGAAGATCAAGAAAGTGCAAGATTATTAGGAAAAGAAATTACCAAGAAGAGTGCAAACAATGGCAACATCGGCAATGACGGAGACGTAAATTCTCCGACATTGTCGTCGTTGTCTGAGGAGATGATATTATCTGAAGGGGAAAATGATGTATTGCAAAAGATGCAAAAGAGATTAAAGAGTGAAGACCAAGAAAGTCCAAGAATAATAATATCAATAACAGAAAGCAAGAAGAAGAGTGAAAAAGAAGAAACTAAAGAAAGTTTGGAAAATAATTCAGAAATAATGGGGTGGATTCCAGGGATAGAGATACCAGGACCAATACCTGATATTGATCCCATTATTCAGCAGCAATTCAATCTTCATACAATTTTGGATGATCCATTCCTTGATGATTGA

Coding sequence (CDS)

ATGATGAGTGAGGACAATTGTTGCAAAGCGAAGATCAGAAACAAAGGCAGCGACGAACATTCTCCCATAGTGTTGTCGTTGTTGGACGAAAGATTTGAAGGGGGAAATGGTGTTTTTATAAAAATGCAAAAGACAGAGAGATTAGAGATTGAAGATCCAGAAAGTCCAAGATTATTAAGAAAAGAAATTACTATGAACAGTGCTGCAGACTACATCAGCAACGGCAGCGACGTACATTCTCCAACAGTGTCCTCCTTGTTGTTGGCAGAGATATTTGAAGGAGAAAATGATGTTTTTCTAAAAATGCAAAAGACAAAGAGATTAGAGAGCGAAGATCAAGAAAGTGCAAGATTATTAGGAAAAGAAATTACCAAGAAGAGTGCAAACAATGGCAACATCGGCAATGACGGAGACGTAAATTCTCCGACATTGTCGTCGTTGTCTGAGGAGATGATATTATCTGAAGGGGAAAATGATGTATTGCAAAAGATGCAAAAGAGATTAAAGAGTGAAGACCAAGAAAGTCCAAGAATAATAATATCAATAACAGAAAGCAAGAAGAAGAGTGAAAAAGAAGAAACTAAAGAAAGTTTGGAAAATAATTCAGAAATAATGGGGTGGATTCCAGGGATAGAGATACCAGGACCAATACCTGATATTGATCCCATTATTCAGCAGCAATTCAATCTTCATACAATTTTGGATGATCCATTCCTTGATGATTGA

Protein sequence

MMSEDNCCKAKIRNKGSDEHSPIVLSLLDERFEGGNGVFIKMQKTERLEIEDPESPRLLRKEITMNSAADYISNGSDVHSPTVSSLLLAEIFEGENDVFLKMQKTKRLESEDQESARLLGKEITKKSANNGNIGNDGDVNSPTLSSLSEEMILSEGENDVLQKMQKRLKSEDQESPRIIISITESKKKSEKEETKESLENNSEIMGWIPGIEIPGPIPDIDPIIQQQFNLHTILDDPFLDD
Homology
[Close]
BLAST of CsaV3_3G039180.1 vs. NCBI nr
Match: KGN59339.1 (hypothetical protein Csa_3G812110 [Cucumis sativus])

HSP 1 Score: 463.4 bits (1191), Expect = 4.8e-127
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0 

Query: 1   MMSEDNCCKAKIRNKGSDEHSPIVLSLLDERFEGGNGVFIKMQKTERLEIEDPESPRLLR 60
           MMSEDNCCKAKIRNKGSDEHSPIVLSLLDERFEGGNGVFIKMQKTERLEIEDPESPRLLR
Sbjct: 1   MMSEDNCCKAKIRNKGSDEHSPIVLSLLDERFEGGNGVFIKMQKTERLEIEDPESPRLLR 60

Query: 61  KEITMNSAADYISNGSDVHSPTVSSLLLAEIFEGENDVFLKMQKTKRLESEDQESARLLG 120
           KEITMNSAADYISNGSDVHSPTVSSLLLAEIFEGENDVFLKMQKTKRLESEDQESARLLG
Sbjct: 61  KEITMNSAADYISNGSDVHSPTVSSLLLAEIFEGENDVFLKMQKTKRLESEDQESARLLG 120

Query: 121 KEITKKSANNGNIGNDGDVNSPTLSSLSEEMILSEGENDVLQKMQKRLKSEDQESPRIII 180
           KEITKKSANNGNIGNDGDVNSPTLSSLSEEMILSEGENDVLQKMQKRLKSEDQESPRIII
Sbjct: 121 KEITKKSANNGNIGNDGDVNSPTLSSLSEEMILSEGENDVLQKMQKRLKSEDQESPRIII 180

Query: 181 SITESKKKSEKEETKESLENNSEIMGWIPGIEIPGPIPDIDPIIQQQFNLHTILDDPFLD 240
           SITESKKKSEKEETKESLENNSEIMGWIPGIEIPGPIPDIDPIIQQQFNLHTILDDPFLD
Sbjct: 181 SITESKKKSEKEETKESLENNSEIMGWIPGIEIPGPIPDIDPIIQQQFNLHTILDDPFLD 240

Query: 241 D 242
           D
Sbjct: 241 D 241

[Close]
BLAST of CsaV3_3G039180.1 vs. TrEMBL
Match: tr|A0A0A0LEJ7|A0A0A0LEJ7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G812110 PE=4 SV=1)

HSP 1 Score: 463.4 bits (1191), Expect = 3.2e-127
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0 

Query: 1   MMSEDNCCKAKIRNKGSDEHSPIVLSLLDERFEGGNGVFIKMQKTERLEIEDPESPRLLR 60
           MMSEDNCCKAKIRNKGSDEHSPIVLSLLDERFEGGNGVFIKMQKTERLEIEDPESPRLLR
Sbjct: 1   MMSEDNCCKAKIRNKGSDEHSPIVLSLLDERFEGGNGVFIKMQKTERLEIEDPESPRLLR 60

Query: 61  KEITMNSAADYISNGSDVHSPTVSSLLLAEIFEGENDVFLKMQKTKRLESEDQESARLLG 120
           KEITMNSAADYISNGSDVHSPTVSSLLLAEIFEGENDVFLKMQKTKRLESEDQESARLLG
Sbjct: 61  KEITMNSAADYISNGSDVHSPTVSSLLLAEIFEGENDVFLKMQKTKRLESEDQESARLLG 120

Query: 121 KEITKKSANNGNIGNDGDVNSPTLSSLSEEMILSEGENDVLQKMQKRLKSEDQESPRIII 180
           KEITKKSANNGNIGNDGDVNSPTLSSLSEEMILSEGENDVLQKMQKRLKSEDQESPRIII
Sbjct: 121 KEITKKSANNGNIGNDGDVNSPTLSSLSEEMILSEGENDVLQKMQKRLKSEDQESPRIII 180

Query: 181 SITESKKKSEKEETKESLENNSEIMGWIPGIEIPGPIPDIDPIIQQQFNLHTILDDPFLD 240
           SITESKKKSEKEETKESLENNSEIMGWIPGIEIPGPIPDIDPIIQQQFNLHTILDDPFLD
Sbjct: 181 SITESKKKSEKEETKESLENNSEIMGWIPGIEIPGPIPDIDPIIQQQFNLHTILDDPFLD 240

Query: 241 D 242
           D
Sbjct: 241 D 241

The following BLAST results are available for this feature:
BLAST of CsaV3_3G039180.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN59339.14.8e-127100.00hypothetical protein Csa_3G812110 [Cucumis sativus][more]
BLAST of CsaV3_3G039180.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G039180.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G039180.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LEJ7|A0A0A0LEJ7_CUCSA3.2e-127100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G812110 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_3G039180CsaV3_3G039180gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G039180.1.exon1CsaV3_3G039180.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G039180.1.cds1CsaV3_3G039180.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_3G039180.1CsaV3_3G039180.1-proteinpolypeptide