MELO3C009664 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C009664
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionF-box and associated interaction domains-containing protein
Locationchr4 : 29217813 .. 29218721 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGAGGACAATTGTTGCAAAGCGAAGAACAGAAACAAAGGCAGCGACGAACATTCTCCCATAGTGTTGTCGTTGTTGGACGAGAGATTTGATGGGGGAAATGATGTTTTTATAAAAATGGAAAAGAAAAAAAAGAGATTAGAGATTGAAGATTTAGAAAGTTCAAGATTATTAAGAAAAGAAATTACTACGAAGAGTGCAGATCACCACATCAGCAACGGCAGCGACGTACATTCTCCGGCGTTGTCGTCATTGTTGAAGGAGATATCTAAAAGGGAAAATGATGTTCTTCTGAATACGCAAAAGACAAATAGATTAGAGATAGAGAAAGATGAAGAAAGACCAAGATTATTTATAAAAAAATTTACCAAGAAGAGTGCAAACAAAGACTATGTCAGCAACGACGGCGAAGTACATTCTCCAACAGTGTCCTCCTTGTTGTTGGACGAGATATTTGAAGGAGAAAATGATGTTTTTCTAAAAATACAAAAGGCACAGAGATTAGAGAGTGAAGATGAAGAAAATGCAAGATTATTAGGAAAAGACATTACCAAGAAGATCAGTACAAACAAAGGCCATGTCAGCAACGATGCAAAAGACGTAGATTCTCCGACATTGTCGTCGTTGTCGGAGGTGTTAATATCTGAAGGGGAAAATGATGTTTTGCAAAAGATGCAAAAGAGATTAGAGAGTGAAGACCAAGAAAGTCCAAGAATAATAACAATATCAGAAAGCAAGAAGAAGAGTGAAAAAGAAGAAACTAAAGAAAGTTTGGAAAATAATTCAGAAATAATGGGGTGGGTTCCAGGGATAGAGATACCAGGACCAATACCTGATCTTGATCCCATTATTCATCAGCAATTCAATCTTCATACAATCTTGGATGATCCACTCCTTGATAATTGA

mRNA sequence

ATGAGTGAGGACAATTGTTGCAAAGCGAAGAACAGAAACAAAGGCAGCGACGAACATTCTCCCATAGTGTTGTCGTTGTTGGACGAGAGATTTGATGGGGGAAATGATGTTTTTATAAAAATGGAAAAGAAAAAAAAGAGATTAGAGATTGAAGATTTAGAAAGTTCAAGATTATTAAGAAAAGAAATTACTACGAAGAGTGCAGATCACCACATCAGCAACGGCAGCGACGTACATTCTCCGGCGTTGTCGTCATTGTTGAAGGAGATATCTAAAAGGGAAAATGATGTTCTTCTGAATACGCAAAAGACAAATAGATTAGAGATAGAGAAAGATGAAGAAAGACCAAGATTATTTATAAAAAAATTTACCAAGAAGAGTGCAAACAAAGACTATGTCAGCAACGACGGCGAAGTACATTCTCCAACAGTGTCCTCCTTGTTGTTGGACGAGATATTTGAAGGAGAAAATGATGTTTTTCTAAAAATACAAAAGGCACAGAGATTAGAGAGTGAAGATGAAGAAAATGCAAGATTATTAGGAAAAGACATTACCAAGAAGATCAGTACAAACAAAGGCCATGTCAGCAACGATGCAAAAGACGTAGATTCTCCGACATTGTCGTCGTTGTCGGAGGTGTTAATATCTGAAGGGGAAAATGATGTTTTGCAAAAGATGCAAAAGAGATTAGAGAGTGAAGACCAAGAAAGTCCAAGAATAATAACAATATCAGAAAGCAAGAAGAAGAGTGAAAAAGAAGAAACTAAAGAAAGTTTGGAAAATAATTCAGAAATAATGGGGTGGGTTCCAGGGATAGAGATACCAGGACCAATACCTGATCTTGATCCCATTATTCATCAGCAATTCAATCTTCATACAATCTTGGATGATCCACTCCTTGATAATTGA

Coding sequence (CDS)

ATGAGTGAGGACAATTGTTGCAAAGCGAAGAACAGAAACAAAGGCAGCGACGAACATTCTCCCATAGTGTTGTCGTTGTTGGACGAGAGATTTGATGGGGGAAATGATGTTTTTATAAAAATGGAAAAGAAAAAAAAGAGATTAGAGATTGAAGATTTAGAAAGTTCAAGATTATTAAGAAAAGAAATTACTACGAAGAGTGCAGATCACCACATCAGCAACGGCAGCGACGTACATTCTCCGGCGTTGTCGTCATTGTTGAAGGAGATATCTAAAAGGGAAAATGATGTTCTTCTGAATACGCAAAAGACAAATAGATTAGAGATAGAGAAAGATGAAGAAAGACCAAGATTATTTATAAAAAAATTTACCAAGAAGAGTGCAAACAAAGACTATGTCAGCAACGACGGCGAAGTACATTCTCCAACAGTGTCCTCCTTGTTGTTGGACGAGATATTTGAAGGAGAAAATGATGTTTTTCTAAAAATACAAAAGGCACAGAGATTAGAGAGTGAAGATGAAGAAAATGCAAGATTATTAGGAAAAGACATTACCAAGAAGATCAGTACAAACAAAGGCCATGTCAGCAACGATGCAAAAGACGTAGATTCTCCGACATTGTCGTCGTTGTCGGAGGTGTTAATATCTGAAGGGGAAAATGATGTTTTGCAAAAGATGCAAAAGAGATTAGAGAGTGAAGACCAAGAAAGTCCAAGAATAATAACAATATCAGAAAGCAAGAAGAAGAGTGAAAAAGAAGAAACTAAAGAAAGTTTGGAAAATAATTCAGAAATAATGGGGTGGGTTCCAGGGATAGAGATACCAGGACCAATACCTGATCTTGATCCCATTATTCATCAGCAATTCAATCTTCATACAATCTTGGATGATCCACTCCTTGATAATTGA

Protein sequence

MSEDNCCKAKNRNKGSDEHSPIVLSLLDERFDGGNDVFIKMEKKKKRLEIEDLESSRLLRKEITTKSADHHISNGSDVHSPALSSLLKEISKRENDVLLNTQKTNRLEIEKDEERPRLFIKKFTKKSANKDYVSNDGEVHSPTVSSLLLDEIFEGENDVFLKIQKAQRLESEDEENARLLGKDITKKISTNKGHVSNDAKDVDSPTLSSLSEVLISEGENDVLQKMQKRLESEDQESPRIITISESKKKSEKEETKESLENNSEIMGWVPGIEIPGPIPDLDPIIHQQFNLHTILDDPLLDN*
Homology
[Close]
BLAST of MELO3C009664 vs. TrEMBL
Match: A0A0A0LEJ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G812110 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 4.7e-82
Identity = 170/232 (73.28%), Postives = 194/232 (83.62%), Query Frame = 1 

Query: 73  SNGSDVHSPALSSLLKEISKRENDVLLNTQKTNRLEIEKDEERPRLFIKKFTKKSANKDY 132
           + GSD HSP + SLL E  +  N V +  QKT RLEIE D E PRL  K+ T  SA  DY
Sbjct: 14  NKGSDEHSPIVLSLLDERFEGGNGVFIKMQKTERLEIE-DPESPRLLRKEITMNSA-ADY 73

Query: 133 VSNDGEVHSPTVSSLLLDEIFEGENDVFLKIQKAQRLESEDEENARLLGKDITKKISTNK 192
           +SN  +VHSPTVSSLLL EIFEGENDVFLK+QK +RLESED+E+ARLLGK+ITKK S N 
Sbjct: 74  ISNGSDVHSPTVSSLLLAEIFEGENDVFLKMQKTKRLESEDQESARLLGKEITKK-SANN 133

Query: 193 GHVSNDAKDVDSPTLSSLSE-VLISEGENDVLQKMQKRLESEDQESPRII-TISESKKKS 252
           G++ ND  DV+SPTLSSLSE +++SEGENDVLQKMQKRL+SEDQESPRII +I+ESKKKS
Sbjct: 134 GNIGNDG-DVNSPTLSSLSEEMILSEGENDVLQKMQKRLKSEDQESPRIIISITESKKKS 193

Query: 253 EKEETKESLENNSEIMGWVPGIEIPGPIPDLDPIIHQQFNLHTILDDPLLDN 303
           EKEETKESLENNSEIMGW+PGIEIPGPIPD+DPII QQFNLHTILDDP LD+
Sbjct: 194 EKEETKESLENNSEIMGWIPGIEIPGPIPDIDPIIQQQFNLHTILDDPFLDD 241

[Close]
BLAST of MELO3C009664 vs. TrEMBL
Match: A0A0A0LEJ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G812110 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.7e-52
Identity = 123/182 (67.58%), Postives = 142/182 (78.02%), Query Frame = 1 

Query: 1   MSEDNCCKAKNRNKGSDEHSPIVLSLLDERFDGGNDVFIKMEKKKKRLEIEDLESSRLLR 60
           MSEDNCCKAK RNKGSDEHSPIVLSLLDERF+GGN VFIKM+ K +RLEIED ES RLLR
Sbjct: 2   MSEDNCCKAKIRNKGSDEHSPIVLSLLDERFEGGNGVFIKMQ-KTERLEIEDPESPRLLR 61

Query: 61  KEITTKSADHHISNGSDVHSPALSS-LLKEISKRENDVLLNTQKTNRLEIEKDEERPRLF 120
           KEIT  SA  +ISNGSDVHSP +SS LL EI + ENDV L  QKT RLE E D+E  RL 
Sbjct: 62  KEITMNSAADYISNGSDVHSPTVSSLLLAEIFEGENDVFLKMQKTKRLESE-DQESARLL 121

Query: 121 IKKFTKKSANKDYVSNDGEVHSPTVSSLLLDEIF-EGENDVFLKIQKAQRLESEDEENAR 180
            K+ TKKSAN   + NDG+V+SPT+SSL  + I  EGENDV  K+QK  RL+SED+E+ R
Sbjct: 122 GKEITKKSANNGNIGNDGDVNSPTLSSLSEEMILSEGENDVLQKMQK--RLKSEDQESPR 179


HSP 2 Score: 102.8 bits (255), Expect = 7.4e-19
Identity = 71/136 (52.21%), Postives = 92/136 (67.65%), Query Frame = 1 

Query: 13  NKGSDEHSPIVLSLL-DERFDGGNDVFIKMEKKKKRLEIEDLESSRLLRKEITTKSADH- 72
           + GSD HSP V SLL  E F+G NDVF+KM+K  KRLE ED ES+RLL KEIT KSA++ 
Sbjct: 73  SNGSDVHSPTVSSLLLAEIFEGENDVFLKMQKT-KRLESEDQESARLLGKEITKKSANNG 132

Query: 73  HISNGSDVHSPALSSLLKE--ISKRENDVLLNTQKTNRLEIEKDEERPRLFI-----KKF 132
           +I N  DV+SP LSSL +E  +S+ ENDVL   QK  RL+ E D+E PR+ I     KK 
Sbjct: 133 NIGNDGDVNSPTLSSLSEEMILSEGENDVLQKMQK--RLKSE-DQESPRIIISITESKKK 192

Query: 133 TKKSANKDYVSNDGEV 140
           ++K   K+ + N+ E+
Sbjct: 193 SEKEETKESLENNSEI 204

[Close]
BLAST of MELO3C009664 vs. NCBI nr
Match: gi|700204206|gb|KGN59339.1| (hypothetical protein Csa_3G812110 [Cucumis sativus])

HSP 1 Score: 312.8 bits (800), Expect = 6.7e-82
Identity = 170/232 (73.28%), Postives = 194/232 (83.62%), Query Frame = 1 

Query: 73  SNGSDVHSPALSSLLKEISKRENDVLLNTQKTNRLEIEKDEERPRLFIKKFTKKSANKDY 132
           + GSD HSP + SLL E  +  N V +  QKT RLEIE D E PRL  K+ T  SA  DY
Sbjct: 14  NKGSDEHSPIVLSLLDERFEGGNGVFIKMQKTERLEIE-DPESPRLLRKEITMNSA-ADY 73

Query: 133 VSNDGEVHSPTVSSLLLDEIFEGENDVFLKIQKAQRLESEDEENARLLGKDITKKISTNK 192
           +SN  +VHSPTVSSLLL EIFEGENDVFLK+QK +RLESED+E+ARLLGK+ITKK S N 
Sbjct: 74  ISNGSDVHSPTVSSLLLAEIFEGENDVFLKMQKTKRLESEDQESARLLGKEITKK-SANN 133

Query: 193 GHVSNDAKDVDSPTLSSLSE-VLISEGENDVLQKMQKRLESEDQESPRII-TISESKKKS 252
           G++ ND  DV+SPTLSSLSE +++SEGENDVLQKMQKRL+SEDQESPRII +I+ESKKKS
Sbjct: 134 GNIGNDG-DVNSPTLSSLSEEMILSEGENDVLQKMQKRLKSEDQESPRIIISITESKKKS 193

Query: 253 EKEETKESLENNSEIMGWVPGIEIPGPIPDLDPIIHQQFNLHTILDDPLLDN 303
           EKEETKESLENNSEIMGW+PGIEIPGPIPD+DPII QQFNLHTILDDP LD+
Sbjct: 194 EKEETKESLENNSEIMGWIPGIEIPGPIPDIDPIIQQQFNLHTILDDPFLDD 241

[Close]
BLAST of MELO3C009664 vs. NCBI nr
Match: gi|700204206|gb|KGN59339.1| (hypothetical protein Csa_3G812110 [Cucumis sativus])

HSP 1 Score: 214.5 bits (545), Expect = 2.5e-52
Identity = 123/182 (67.58%), Postives = 142/182 (78.02%), Query Frame = 1 

Query: 1   MSEDNCCKAKNRNKGSDEHSPIVLSLLDERFDGGNDVFIKMEKKKKRLEIEDLESSRLLR 60
           MSEDNCCKAK RNKGSDEHSPIVLSLLDERF+GGN VFIKM+ K +RLEIED ES RLLR
Sbjct: 2   MSEDNCCKAKIRNKGSDEHSPIVLSLLDERFEGGNGVFIKMQ-KTERLEIEDPESPRLLR 61

Query: 61  KEITTKSADHHISNGSDVHSPALSS-LLKEISKRENDVLLNTQKTNRLEIEKDEERPRLF 120
           KEIT  SA  +ISNGSDVHSP +SS LL EI + ENDV L  QKT RLE E D+E  RL 
Sbjct: 62  KEITMNSAADYISNGSDVHSPTVSSLLLAEIFEGENDVFLKMQKTKRLESE-DQESARLL 121

Query: 121 IKKFTKKSANKDYVSNDGEVHSPTVSSLLLDEIF-EGENDVFLKIQKAQRLESEDEENAR 180
            K+ TKKSAN   + NDG+V+SPT+SSL  + I  EGENDV  K+QK  RL+SED+E+ R
Sbjct: 122 GKEITKKSANNGNIGNDGDVNSPTLSSLSEEMILSEGENDVLQKMQK--RLKSEDQESPR 179


HSP 2 Score: 102.8 bits (255), Expect = 1.1e-18
Identity = 71/136 (52.21%), Postives = 92/136 (67.65%), Query Frame = 1 

Query: 13  NKGSDEHSPIVLSLL-DERFDGGNDVFIKMEKKKKRLEIEDLESSRLLRKEITTKSADH- 72
           + GSD HSP V SLL  E F+G NDVF+KM+K  KRLE ED ES+RLL KEIT KSA++ 
Sbjct: 73  SNGSDVHSPTVSSLLLAEIFEGENDVFLKMQKT-KRLESEDQESARLLGKEITKKSANNG 132

Query: 73  HISNGSDVHSPALSSLLKE--ISKRENDVLLNTQKTNRLEIEKDEERPRLFI-----KKF 132
           +I N  DV+SP LSSL +E  +S+ ENDVL   QK  RL+ E D+E PR+ I     KK 
Sbjct: 133 NIGNDGDVNSPTLSSLSEEMILSEGENDVLQKMQK--RLKSE-DQESPRIIISITESKKK 192

Query: 133 TKKSANKDYVSNDGEV 140
           ++K   K+ + N+ E+
Sbjct: 193 SEKEETKESLENNSEI 204

The following BLAST results are available for this feature:
BLAST of MELO3C009664 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LEJ7_CUCSA4.7e-8273.28Uncharacterized protein OS=Cucumis sativus GN=Csa_3G812110 PE=4 SV=1[more]
A0A0A0LEJ7_CUCSA1.7e-5267.58Uncharacterized protein OS=Cucumis sativus GN=Csa_3G812110 PE=4 SV=1[more]
BLAST of MELO3C009664 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700204206|gb|KGN59339.1|6.7e-8273.28hypothetical protein Csa_3G812110 [Cucumis sativus][more]
gi|700204206|gb|KGN59339.1|2.5e-5267.58hypothetical protein Csa_3G812110 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU64434melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C009664T1MELO3C009664T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU64434MU64434transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C009664Csa3G812110Cucumber (Chinese Long) v2cumeB223
MELO3C009664ClCG10G017210Watermelon (Charleston Gray)mewcgB315
MELO3C009664CSPI03G36850Wild cucumber (PI 183967)cpimeB214
MELO3C009664CsaV3_3G039180Cucumber (Chinese Long) v3cucmeB218
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C009664Watermelon (97103) v1mewmB346
MELO3C009664Cucurbita pepo (Zucchini)cpemeB571
MELO3C009664Cucurbita pepo (Zucchini)cpemeB797
MELO3C009664Bottle gourd (USVL1VR-Ls)lsimeB260
MELO3C009664Cucumber (Gy14) v2cgybmeB184
MELO3C009664Silver-seed gourdcarmeB0163
MELO3C009664Silver-seed gourdcarmeB0251
MELO3C009664Watermelon (97103) v2mewmbB316
MELO3C009664Wax gourdmewgoB382
MELO3C009664Cucumber (Gy14) v1cgymeB558
MELO3C009664Cucurbita maxima (Rimu)cmameB229
MELO3C009664Cucurbita maxima (Rimu)cmameB752
MELO3C009664Cucurbita moschata (Rifu)cmomeB215
MELO3C009664Cucurbita moschata (Rifu)cmomeB744