CsaV3_3G026770 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G026770
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3 : 23050081 .. 23051347 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTAATTAGAATCACTCATTTTAGAGAGATCCATTTTTAACCGATTTGGGTGTTAGTGATTTGTATGTTAGATTTGGAATGGAGGAGAGAAACAAAATTCCTCCATTTCCTTGTCGTTTTGGTTTCTTCGACTTCTCTCGATGGGTTGTGGCATTTCTAGGTTTGACCCTAAGGAGGTAGTCGAAGCAACGGCCAACGATTCCAATCACAATGATACTCCAAATCATTCCAATCACAAGTCCTATTCAACCTCCAATTGCTTCACCGGTGAATCCAAGCATATGAGTCACCAAGGACGTCCCCCTCCACCTGAGCCTCGTCATTCTTCTTCTGATCGAGCTGCACCCGGAGATCAAAAGATGATGAAGATGAAGACAAATGTCAAGCAAGAAGAATCAAGAGGGATTAATACTAATGGCCTAAAAATAAGGATGAGGATGAGGACAAGGACTAGAACTTCAACGCAAATTGATAATGATGATGATGATTCTAGCGATGAGGATTCTGATAAAAATGATCAAAATTGCCGTGAGATTTGTCGAGGAGGATCCCCAAGTTTCAGGGAATATTGCGTTGACTCTGAATCGAGATCAAGAAGCATGGGAAGTGAAGGTAGAGATCAAACTTCGGAAAATTATTATCGGAGATAACAAAAAGTTAGTTATCGTTACTTGATAAAAGAAAATTGCAAATTTGATGAAAGAAAAAAGAAAAATAATACTCTTGTTTGTTCTTTTAACATAAATTGGTTTTTATTTTACATAGATGACTGTGAAGGAGATCAGTGCAAGTGGGCACCAAAAGAGAAGGTATAAAATTTTATGAAAGTAATGTGTATGTTTCATTTTAAAACTTTATTAAGTCGAGAAGTTAGAGTTATATTTTTATAAAATGCATGGCAGTAATAATTGAGTATTATTAGTGTTTGAATAAATTGAAAATGAAAATTGTTGATAGAATTAAGAACAATAATATATTTGTTTGGGCAGGGAGTGGATAATGAAATAGGGAAGAAAGAAAGAAGAGGAAAAGGTTTAAGGAACGCATTACAACGTGGAATGACAAGTGGTGGAGTCAAGAATTTGTTAACTTCCTCTTCACGTCCTCAACAACACCACACCAATTTTTCTTCCCATTAACCTTTTGCAAAACCCTCTTCATTTCATTTCAATTTCCTACTCATCAATTCTTTTATTTGTTATTTATTTATTCTTTCAAATCTAAACATTTGTGTAAAACAATTTCACTTTTTAAATGCCTATAACC

mRNA sequence

ATGGGTTGTGGCATTTCTAGGTTTGACCCTAAGGAGGTAGTCGAAGCAACGGCCAACGATTCCAATCACAATGATACTCCAAATCATTCCAATCACAAGTCCTATTCAACCTCCAATTGCTTCACCGGTGAATCCAAGCATATGAGTCACCAAGGACGTCCCCCTCCACCTGAGCCTCGTCATTCTTCTTCTGATCGAGCTGCACCCGGAGATCAAAAGATGATGAAGATGAAGACAAATGTCAAGCAAGAAGAATCAAGAGGGATTAATACTAATGGCCTAAAAATAAGGATGAGGATGAGGACAAGGACTAGAACTTCAACGCAAATTGATAATGATGATGATGATTCTAGCGATGAGGATTCTGATAAAAATGATCAAAATTGCCGTGAGATTTGTCGAGGAGGATCCCCAAGTTTCAGGGAATATTGCGTTGACTCTGAATCGAGATCAAGAAGCATGGGAAGTGAAGGTAGAGATCAAACTTCGGAAAATTATTATCGGAGATAA

Coding sequence (CDS)

ATGGGTTGTGGCATTTCTAGGTTTGACCCTAAGGAGGTAGTCGAAGCAACGGCCAACGATTCCAATCACAATGATACTCCAAATCATTCCAATCACAAGTCCTATTCAACCTCCAATTGCTTCACCGGTGAATCCAAGCATATGAGTCACCAAGGACGTCCCCCTCCACCTGAGCCTCGTCATTCTTCTTCTGATCGAGCTGCACCCGGAGATCAAAAGATGATGAAGATGAAGACAAATGTCAAGCAAGAAGAATCAAGAGGGATTAATACTAATGGCCTAAAAATAAGGATGAGGATGAGGACAAGGACTAGAACTTCAACGCAAATTGATAATGATGATGATGATTCTAGCGATGAGGATTCTGATAAAAATGATCAAAATTGCCGTGAGATTTGTCGAGGAGGATCCCCAAGTTTCAGGGAATATTGCGTTGACTCTGAATCGAGATCAAGAAGCATGGGAAGTGAAGGTAGAGATCAAACTTCGGAAAATTATTATCGGAGATAA

Protein sequence

MGCGISRFDPKEVVEATANDSNHNDTPNHSNHKSYSTSNCFTGESKHMSHQGRPPPPEPRHSSSDRAAPGDQKMMKMKTNVKQEESRGINTNGLKIRMRMRTRTRTSTQIDNDDDDSSDEDSDKNDQNCREICRGGSPSFREYCVDSESRSRSMGSEGRDQTSENYYRR

Homology

[Close]

BLAST of CsaV3_3G026770 vs. NCBI nr
Match: XP_011651546.1 (PREDICTED: uncharacterized protein LOC105434913 [Cucumis sativus] >KGN58150.1 hypothetical protein Csa_3G560250 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 3.3e-34
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MGCGISRFDPKEVVEATANDSNHNDTPNHSNHKSYSTSNCFTGESKHMSHQGRPPXXXXX 60
           MGCGISRFDPKEVVEATANDSNHNDTPNHSNHKSYSTSNCFTGESKHMSHQGRPPXXXXX
Sbjct: 1   MGCGISRFDPKEVVEATANDSNHNDTPNHSNHKSYSTSNCFTGESKHMSHQGRPPXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXQNCREICRGGSPSFREYCVDSESRSRSMGSE 158
           XXXXXXQNCREICRGGSPSFREYCVDSESRSRSMGSE
Sbjct: 121 XXXXXXQNCREICRGGSPSFREYCVDSESRSRSMGSE 157

[Close]

BLAST of CsaV3_3G026770 vs. NCBI nr
Match: XP_023529002.1 (uncharacterized protein LOC111791764 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 67.4 bits (163), Expect = 5.4e-08
Identity = 54/157 (34.39%), Postives = 64/157 (40.76%), Query Frame = 0


Query: 1   MGCGISRFDPKEVVEATANDSNHNDTPNHSNHKSYSTSNCFTGESKHMSHQGRPPXXXXX 60
           MGCGIS+F+PKEVVEATA D  HN   +H +    ST+NCFTGE K    +G        
Sbjct: 1   MGCGISKFEPKEVVEATA-DCPHNPPRSHKS----STTNCFTGEPKPSVQEG-------- 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
                                                                       
Sbjct: 61  ---------STTEKQSRKGNGSSRDREVAGEKMVKMSVNVKREKVEEDDRQMETMTQINF 120

Query: 121 XXXXXXQNCREICRGGSPSFREYCVDSESRSRSMGSE 158
                 QN R+I RGGSPSFREYC+ S+SRSRS+GSE
Sbjct: 121 EDPNDDQNYRKIFRGGSPSFREYCIGSKSRSRSIGSE 135

[Close]

BLAST of CsaV3_3G026770 vs. NCBI nr
Match: XP_022935241.1 (uncharacterized protein LOC111442180 isoform X2 [Cucurbita moschata])

HSP 1 Score: 65.1 bits (157), Expect = 2.7e-07
Identity = 53/157 (33.76%), Postives = 63/157 (40.13%), Query Frame = 0


Query: 1   MGCGISRFDPKEVVEATANDSNHNDTPNHSNHKSYSTSNCFTGESKHMSHQGRPPXXXXX 60
           MGCGIS+F+PKEVVEATA D  HN   +H +    ST+NCFT E K    +G        
Sbjct: 1   MGCGISKFEPKEVVEATA-DCPHNPPRSHKS----STTNCFTSEPKPSVQEG-------- 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
                                                                       
Sbjct: 61  ---------SSTEKQSRKGNGSSRDREVAGEKMVKMSVNVKREKVEEDDRQMETRTQINF 120

Query: 121 XXXXXXQNCREICRGGSPSFREYCVDSESRSRSMGSE 158
                 QN R+I RGGSPSFREYC+ S+SRSRS+GSE
Sbjct: 121 EDPNDDQNYRKIFRGGSPSFREYCIGSKSRSRSIGSE 135

[Close]

BLAST of CsaV3_3G026770 vs. NCBI nr
Match: XP_022935240.1 (uncharacterized protein LOC111442180 isoform X1 [Cucurbita moschata])

HSP 1 Score: 65.1 bits (157), Expect = 2.7e-07
Identity = 53/157 (33.76%), Postives = 63/157 (40.13%), Query Frame = 0


Query: 1   MGCGISRFDPKEVVEATANDSNHNDTPNHSNHKSYSTSNCFTGESKHMSHQGRPPXXXXX 60
           MGCGIS+F+PKEVVEATA D  HN   +H +    ST+NCFT E K    +G        
Sbjct: 1   MGCGISKFEPKEVVEATA-DCPHNPPRSHKS----STTNCFTSEPKPSVQEG-------- 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
                                                                       
Sbjct: 61  ---------SSTEKQSRKGNGSSRDREVAGEKMVKMSVNVKREKVEEDDRQMETRTQINF 120

Query: 121 XXXXXXQNCREICRGGSPSFREYCVDSESRSRSMGSE 158
                 QN R+I RGGSPSFREYC+ S+SRSRS+GSE
Sbjct: 121 EDPNDDQNYRKIFRGGSPSFREYCIGSKSRSRSIGSE 135

[Close]

BLAST of CsaV3_3G026770 vs. NCBI nr
Match: XP_022983491.1 (uncharacterized protein LOC111482081 isoform X2 [Cucurbita maxima])

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-06
Identity = 52/157 (33.12%), Postives = 62/157 (39.49%), Query Frame = 0


Query: 1   MGCGISRFDPKEVVEATANDSNHNDTPNHSNHKSYSTSNCFTGESKHMSHQGRPPXXXXX 60
           MGCGIS+F+PKEVVEA AN   HN   +H +    ST+NCFT E K    +G        
Sbjct: 1   MGCGISKFEPKEVVEAIAN-CPHNPPRSHKS----STTNCFTSEPKPSVQEG-------- 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
                                                                       
Sbjct: 61  ---------SSSEKQSRKGDGSSWDREVAGEKMVKMSVNVKREKVEEDDRQMETRTQINF 120

Query: 121 XXXXXXQNCREICRGGSPSFREYCVDSESRSRSMGSE 158
                 QN R+I RGGSPSFREYC+ S+SRSRS+GSE
Sbjct: 121 EDPNDDQNYRKIFRGGSPSFREYCIGSKSRSRSIGSE 135

[Close]

BLAST of CsaV3_3G026770 vs. TrEMBL
Match: tr|A0A0A0L883|A0A0A0L883_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G560250 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.2e-34
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MGCGISRFDPKEVVEATANDSNHNDTPNHSNHKSYSTSNCFTGESKHMSHQGRPPXXXXX 60
           MGCGISRFDPKEVVEATANDSNHNDTPNHSNHKSYSTSNCFTGESKHMSHQGRPPXXXXX
Sbjct: 1   MGCGISRFDPKEVVEATANDSNHNDTPNHSNHKSYSTSNCFTGESKHMSHQGRPPXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXQNCREICRGGSPSFREYCVDSESRSRSMGSE 158
           XXXXXXQNCREICRGGSPSFREYCVDSESRSRSMGSE
Sbjct: 121 XXXXXXQNCREICRGGSPSFREYCVDSESRSRSMGSE 157

The following BLAST results are available for this feature:

BLAST of CsaV3_3G026770 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011651546.1	3.3e-34	100.00	PREDICTED: uncharacterized protein LOC105434913 [Cucumis sativus] >KGN58150.1 hy...	[more]
XP_023529002.1	5.4e-08	34.39	uncharacterized protein LOC111791764 [Cucurbita pepo subsp. pepo]	[more]
XP_022935241.1	2.7e-07	33.76	uncharacterized protein LOC111442180 isoform X2 [Cucurbita moschata]	[more]
XP_022935240.1	2.7e-07	33.76	uncharacterized protein LOC111442180 isoform X1 [Cucurbita moschata]	[more]
XP_022983491.1	1.3e-06	33.12	uncharacterized protein LOC111482081 isoform X2 [Cucurbita maxima]	[more]

BLAST of CsaV3_3G026770 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G026770 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G026770 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L883\|A0A0A0L883_CUCSA	2.2e-34	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G560250 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0046394	carboxylic acid biosynthetic process
biological_process	GO:0006520	cellular amino acid metabolic process
biological_process	GO:0006725	cellular aromatic compound metabolic process
biological_process	GO:0034641	cellular nitrogen compound metabolic process
biological_process	GO:0046483	heterocycle metabolic process
biological_process	GO:0032787	monocarboxylic acid metabolic process
biological_process	GO:1901360	organic cyclic compound metabolic process
biological_process	GO:1901566	organonitrogen compound biosynthetic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G026770.1	CsaV3_3G026770.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..169
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 145..169
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..46

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G026770	CSPI03G25270	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G026770	Cp4.1LG03g06820	Cucurbita pepo (Zucchini)	cpecucB0758
CsaV3_3G026770	MELO3C014917	Melon (DHL92) v3.5.1	cucmeB250
CsaV3_3G026770	ClCG05G013930	Watermelon (Charleston Gray)	cucwcgB237
CsaV3_3G026770	Lsi07G014990	Bottle gourd (USVL1VR-Ls)	cuclsiB256
CsaV3_3G026770	MELO3C014917.2	Melon (DHL92) v3.6.1	cucmedB233
CsaV3_3G026770	Cla97C05G095360	Watermelon (97103) v2	cucwmbB219

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G026770	Cucumber (Chinese Long) v3	cuccucB017
CsaV3_3G026770	Cucumber (Chinese Long) v3	cuccucB144
CsaV3_3G026770	Silver-seed gourd	carcucB0399
CsaV3_3G026770	Silver-seed gourd	carcucB0467
CsaV3_3G026770	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G026770	Cucumber (Gy14) v1	cgycucB040
CsaV3_3G026770	Cucumber (Gy14) v1	cgycucB238
CsaV3_3G026770	Cucurbita maxima (Rimu)	cmacucB0085
CsaV3_3G026770	Cucurbita maxima (Rimu)	cmacucB0146
CsaV3_3G026770	Cucurbita maxima (Rimu)	cmacucB0148
CsaV3_3G026770	Cucurbita maxima (Rimu)	cmacucB0292
CsaV3_3G026770	Cucurbita moschata (Rifu)	cmocucB0074
CsaV3_3G026770	Cucurbita moschata (Rifu)	cmocucB0128
CsaV3_3G026770	Cucurbita moschata (Rifu)	cmocucB0126
CsaV3_3G026770	Cucurbita moschata (Rifu)	cmocucB0284
CsaV3_3G026770	Cucurbita pepo (Zucchini)	cpecucB0457
CsaV3_3G026770	Cucurbita pepo (Zucchini)	cpecucB0760
CsaV3_3G026770	Cucurbita pepo (Zucchini)	cpecucB0837
CsaV3_3G026770	Cucurbita pepo (Zucchini)	cpecucB0844
CsaV3_3G026770	Wild cucumber (PI 183967)	cpicucB028
CsaV3_3G026770	Bottle gourd (USVL1VR-Ls)	cuclsiB247
CsaV3_3G026770	Melon (DHL92) v3.5.1	cucmeB196
CsaV3_3G026770	Melon (DHL92) v3.6.1	cucmedB187
CsaV3_3G026770	Watermelon (Charleston Gray)	cucwcgB240
CsaV3_3G026770	Watermelon (Charleston Gray)	cucwcgB255
CsaV3_3G026770	Watermelon (97103) v1	cucwmB246
CsaV3_3G026770	Watermelon (97103) v1	cucwmB262
CsaV3_3G026770	Watermelon (97103) v1	cucwmB289
CsaV3_3G026770	Watermelon (97103) v2	cucwmbB210
CsaV3_3G026770	Watermelon (97103) v2	cucwmbB232
CsaV3_3G026770	Watermelon (97103) v2	cucwmbB234
CsaV3_3G026770	Wax gourd	cucwgoB259
CsaV3_3G026770	Wax gourd	cucwgoB318