Cp4.1LG03g06820 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG03g06820
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Shikimate kinase
Location	Cp4.1LG03 : 3840583 .. 3845217 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATAGACGTGAGAGAGTAACCCCTTCATTTTCCCGACATCATTTCCTTCGACTCCTCTCGATGGGTTGCGGAATCTCAAAGTTCGAACCTAAGGAGGTAGTCGAAGCAACTGCCGATTGCCCCCACAATCCTCCTCGTTCCCACAAGTCTTCCACCACCAATTGCTTCACCGGTGAACCCAAGCCATCGGTTCAAGAAGGATCTACGACTGAGAAGCAGTCTCGAAAAGGTAATGGCTCTTCTCGGGATCGAGAGGTGGCTGGGGAGAAGATGGTGAAGATGAGTGTGAATGTGAAGCGAGAAAAAGTAGAAGAGGACGATCGACAAATGGAAACAATGACTCAAATAAATTTTGAAGATCCTAACGATGATCAAAATTATCGTAAGATTTTTCGAGGAGGATCGCCGAGTTTTAGGGAGTATTGCATTGGATCTAAATCGAGATCAAGGAGTATAGGAAGTGAAGGTAATGTACTCAACCAATCAATTTCAAACTCGGGTAACAACATGGTCGTTGTGCTTACAATAACCATTGATTTTATTCTGCAACAGATAACTACGACGGAGATCATGGCATGTGGCCGAACGAACGAACGCTGAATTTAGAAAAGGAGAAGGTAGTTTTCCCGTTTTCAATTTCTCTATTTTACGCGCCGTGAATAACGTTTGAATAAAAACCTATTAAAACGATGAATAAAAATTGAGAGTTGAGACCCGAACAATCCTGCATCACTCCAAATCATCATCTTATTTACTCTCGATCTTGTTTATTCTAATGGATTTCTACTCCAAATCGAATAGAAGGAAGAGAAAAAAGAACGAAGAGGAAAAGGCACGAAGAAGACATTACGTCGTGGAAAATCAGGTGAAGGGAGGAGTTTATTGAGTACTTCACGTGGTCGTCACCAACAGCAAAACGACAAATTTTCTTCTTTGGATGACGATACTTCTAATAAGCATCTACCTGCAAGAGCGTCTTGATTTCCTTCACACATATACAAAACATTTAATTTATTTGTTCATTCAATTTCATTTCATATACCATTTCTTTTTTTTTTCTACCAAATGCAAACGTCCTTACGTGTAAATCATTAATAAATTGTAATTATTTTTTAAAAAATACTGTGTTCTTACGTCATTGATATGAACCAATCCATCAATCATGAAAGATAAATTGATTCTTGAATTCGTTTCGTGAAGCGTGTTAAATGAACACGACTCTCCATGACGGTATGATATTGTCCACTTTGAACATAAGCTCGAAGAGAGAATTCCTCCATTATAAACCCAGGATTGGCTGACCCAATAGAGCATGTCCTTCCCTTCCTTAGAGCGCGCTTGTCATGGCGACGACAACCTCTCCACTAACTGATCTCCAATTCAATATCCACTTTCGAAAAGTTGAAGCAATGGCTTTGAATTCGAGCTGCTTCTTGTCCCTGCCGTCCTATGTTCGTCGTAATCACAGAGTTCCACTTCGTATTTGCTTACCACTTTTGCATTCTTCTGCTATTCGGCGCCGCAGATCTTTACGGAACTGCCTTCTGTGAGTTCAAGTTTTGTGTCCATTTTTCCCTGTGGAGTAACTTTGTAATCTGTTTATGTTTCATTTTTCTCACGACGGTGCGATTTCTTAAGGTGAATTCATAGAAATGGATTTTGGATTTTCAATAATGAATTTTCGTCCAGTTTTGTTGTTTTTGGTTTATGGTGGTGTTTTTGCTCTCGGATAGTGCAGTTCTAAGTTCACTTCTCATAGAATTGGATTGCAAGGTCATGATGCTATTTGCTTGTAAATTATGGATGCTGTATAGCTGGAAATTGAGGTTGATCGATGAAACAGAACCTTAGTTGGAGAGTGGAGTTAAATTGAAACCTAATTCAGCTTAATAAAATATATGTAAGAATAAGAACCTAAAGGATGAATTGTATAGTTTCAGTTTCATCTCTCTTTACTCAGCGATTAATTTTGGCCTTTGTTAGATGTGGAGGCGATGGTCACTCCTGATGATCTGTCTCTTGAAGTGAAGGTTAGACATCGTTTCTGTAGCCTCAAGTTTCCATGTTATAGTGAACTGAATGAATGGAAGAAACATAAGTTTTAAACCTCAGAGAATCCTTTTTGTACTTCTTTTTCGCTCTGTTTAAGTCTTGTGTCCTGATGGTGCATTTAGATTGGTTCTTGTTGGCTTCATTTTTCTCGTAGCCTGAGCAGTTTATTTACATTGCTCAGTTTGAATTCGAAAGAACGAAATGAATGTTGCTACTAAATTGAAAGGAACATCCATCTTTCTCGTGGGCAAGCACTGATCTTCTATACTGAGGCAATTTAGATTTATGACAAACTAATGTATGAAACTATTTGATATGAAGGGATCAACAGCTCCATAAAAACTAAGTTAGCCAAATTCCTGGCTGATAGGTTGAGATACTATTACTTCGACAGGTACTCATAGAGGTACTTTTTTTCTTGGCGTGTGGTATTGTTCTCCTTCCTGTTGCTAATTCTGAATTTTCATGTCATAAACAAATTAGTGATCGTTTAGTTGTGGGAGCTAGTGGTGGTGAGGCTGCTGCCGAACTTTAGAAGCTAAGTGATGAAAAAGGTTTTCGGGCATCTTAGGTAGGTTATGCTTTGTTGTATCTTCTCAGAAGTTATTTAGTCAAAACTGGCAGTTTAGTAGCACCTTTTTTTTAACTCCGTTTTCTAGATTTTTGTACGTGAAGACACATATTGAATGTCTGTTGAGGATTATTGGGGGGAGTCTCACATTGGCTAATTAAGAGAATGATCATGAGTTTATAAGCAAGGAATACATCTCCATTGGTACGAGGGGTTCTTTGGAGAAACTAAAAGCCTCTATGAGAGCTTATGCTCAAAGTAGACAATGTCATACCATTGAGGAGCGTTGTGATTTCTAACAAATACATCTTTCATATAATGCTCAATACATACTAGTAACAGCCACAGGTACCTGACATGCCATTTTGTTCCAAACTGAAGAGTTAAGACGACTATCTTCTATGGGTCGACTAGTTGTGTGTGCTGGAAATGGTGCCGTTCAGAGATCTACTAATCTGTATGAATGTTCAATGCTTAATTTTTACTGTTTTAGTGCACATATTCTTCATGGAAAAATTTCCTCGTAGTTAAGGATGTGTTCAAATTGCTTATGCTCACGTTGCTCTTGGATATCATTTCGCATGCAGGGCGCTTTTGAGGCATAGCATAACGTTCTGGATTTATTTACCCCTACAGATGATAGCAGAGGAATTTGCTGTAGATCGAAGCCAACTTCCAGTATTTGATATATCCAATTCTGGATCTTATGGTGAGGTAATTAACGGTTTGGTTGAACTTGAATGTGGTTTCCAACATAGTTTTTGTAAAAGTTGAAGCCACCGCTAACAGATATTGTCATATTTAGACTTTTCCTTTCAAGCTTCCCCTCAATGTTCTAAAACGCTTTTACTTATGAGAGATTTTCACACCTTTGTAAAAAATGTTTGTTCCCCTGTCCAATCGATGTGAGATCTCACAATCCAACCCCTCCGAGGCCCAACATCTTCACTAGCACACCACTTAATGTCTAGCTTTGATACCAGTTGTAACCGCTCAAGTCCACCACTAGCCGATATTGTTCTCTCTGGGTTTTCCTTTTCGGGCATTTTTGAAGCTTTGAGACGAGTCCTAGATATTCTATTGAGGTTTTGAATCTCACCTTTCTCGTAGGATTGATCTCAATCCCTAGACATCCTTCATTCCTTTGGCTAATCTTGTGTATAACGCAGGTGCTGGGTCAAATAACTTCCCAGAACCAAAAATTAAAAGATGGCTATGCCACGGCTGATGCTCCAATATCACTCCAAAGTATGTGATCCTGATCCTTCCCACACTTGCAATATTCAAGGTTTCATGCATATTCTGGTTTCTAAAATCTCATGCCTCGGAGAACTAGCGAGTAATTTAGGATATGATGCCTTCAATGCTGTCACAACCGAAGACAAGGCTTTGGAGGTATGTATCCTTACAATTCTTATACTTGCCTACAGGGGTGGAACATAAATTTACGGTGAAATTACAAATCTAGATTGATTGTGATATATTGGTTGGGGAGGAGAACAAAACACCATTTATAAGAGTGTGGAATCCCTAGCAGACTTGTTTTAAAACCTTGAGCGGAAGCCCGAAAGGGAAAGCCTAAAAAAGACAATATCGGCTCGCGGTGGATGTGGGCCGTAACAAACAAATTTAGTTTTTAAACTTTCAAGATGATGTTTATTTGGTTTCTAAACTTTCAAAGGTATTTAATAAATAATCTCCCACCTTTTAATTTTGTACCTAATAGATCATTCAACTTTTAGTTGTGTGTTTTATAGGTCTACGATATATTAATTTTTTTTTTTAAAAAAACCATTATATTAGATTTAAAATTGAATTTTATGTTCATTATGACCGAGTAGATCTATGAATTTAAAAAGGGTACTGTCGTGGGTAAGGTCTTGGGTTTTAACATCTACTCATTGCATGTTCGAATCTTCAAAGTGAGTGAGGCTAAGAAATATTTGATTGTAGGTTAAAAGTTTAAAAGTATTTTGATTTTGATGTGCAATGGGAGGAAGGAGATGGGTCA

mRNA sequence

TAATAGACGTGAGAGAGTAACCCCTTCATTTTCCCGACATCATTTCCTTCGACTCCTCTCGATGGGTTGCGGAATCTCAAAGTTCGAACCTAAGGAGGTAGTCGAAGCAACTGCCGATTGCCCCCACAATCCTCCTCGTTCCCACAAGTCTTCCACCACCAATTGCTTCACCGGTGAACCCAAGCCATCGGTTCAAGAAGGATCTACGACTGAGAAGCAGTCTCGAAAAGGTAATGGCTCTTCTCGGGATCGAGAGGTGGCTGGGGAGAAGATGGTGAAGATGAGTGTGAATGTGAAGCGAGAAAAAGTAGAAGAGGACGATCGACAAATGGAAACAATGACTCAAATAAATTTTGAAGATCCTAACGATGATCAAAATTATCGTAAGATTTTTCGAGGAGGATCGCCGAGTTTTAGGGAGTATTGCATTGGATCTAAATCGAGATCAAGGAGTATAGGAAGTGAAGATAACTACGACGGAGATCATGGCATCGCGCTTGTCATGGCGACGACAACCTCTCCACTAACTGATCTCCAATTCAATATCCACTTTCGAAAAGTTGAAGCAATGGCTTTGAATTCGAGCTGCTTCTTGTCCCTGCCGTCCTATGTTCGTCGTAATCACAGAGTTCCACTTCGTATTTGCTTACCACTTTTGCATTCTTCTGCTATTCGGCGCCGCAGATCTTTACGGAACTGCCTTCTCCTGAGCAGTTTATTTACATTGCTCAGTTTGAATTCGAAAGAACGAAATGAATGGATCAACAGCTCCATAAAAACTAAGTTAGCCAAATTCCTGGCTGATAGGTTGAGATACTATTACTTCGACAGACGACTATCTTCTATGGGTCGACTAGTTGTGTGTGCTGGAAATGGTGCCGTTCAGAGATCTACTAATCTGGCGCTTTTGAGGCATAGCATAACGTTCTGGATTTATTTACCCCTACAGATGATAGCAGAGGAATTTGCTGTAGATCGAAGCCAACTTCCAGTGCTGGGTCAAATAACTTCCCAGAACCAAAAATTAAAAGATGGCTATGCCACGGCTGATGCTCCAATATCACTCCAAAGTTTCATGCATATTCTGGTTTCTAAAATCTCATGCCTCGGAGAACTAGCGAGTAATTTAGGATATGATGCCTTCAATGCTGTCACAACCGAAGACAAGGCTTTGGAGTATTTTGATTTTGATGTGCAATGGGAGGAAGGAGATGGGTCA

Coding sequence (CDS)

ATGGGTTGCGGAATCTCAAAGTTCGAACCTAAGGAGGTAGTCGAAGCAACTGCCGATTGCCCCCACAATCCTCCTCGTTCCCACAAGTCTTCCACCACCAATTGCTTCACCGGTGAACCCAAGCCATCGGTTCAAGAAGGATCTACGACTGAGAAGCAGTCTCGAAAAGGTAATGGCTCTTCTCGGGATCGAGAGGTGGCTGGGGAGAAGATGGTGAAGATGAGTGTGAATGTGAAGCGAGAAAAAGTAGAAGAGGACGATCGACAAATGGAAACAATGACTCAAATAAATTTTGAAGATCCTAACGATGATCAAAATTATCGTAAGATTTTTCGAGGAGGATCGCCGAGTTTTAGGGAGTATTGCATTGGATCTAAATCGAGATCAAGGAGTATAGGAAGTGAAGATAACTACGACGGAGATCATGGCATCGCGCTTGTCATGGCGACGACAACCTCTCCACTAACTGATCTCCAATTCAATATCCACTTTCGAAAAGTTGAAGCAATGGCTTTGAATTCGAGCTGCTTCTTGTCCCTGCCGTCCTATGTTCGTCGTAATCACAGAGTTCCACTTCGTATTTGCTTACCACTTTTGCATTCTTCTGCTATTCGGCGCCGCAGATCTTTACGGAACTGCCTTCTCCTGAGCAGTTTATTTACATTGCTCAGTTTGAATTCGAAAGAACGAAATGAATGGATCAACAGCTCCATAAAAACTAAGTTAGCCAAATTCCTGGCTGATAGGTTGAGATACTATTACTTCGACAGACGACTATCTTCTATGGGTCGACTAGTTGTGTGTGCTGGAAATGGTGCCGTTCAGAGATCTACTAATCTGGCGCTTTTGAGGCATAGCATAACGTTCTGGATTTATTTACCCCTACAGATGATAGCAGAGGAATTTGCTGTAGATCGAAGCCAACTTCCAGTGCTGGGTCAAATAACTTCCCAGAACCAAAAATTAAAAGATGGCTATGCCACGGCTGATGCTCCAATATCACTCCAAAGTTTCATGCATATTCTGGTTTCTAAAATCTCATGCCTCGGAGAACTAGCGAGTAATTTAGGATATGATGCCTTCAATGCTGTCACAACCGAAGACAAGGCTTTGGAGTATTTTGATTTTGATGTGCAATGGGAGGAAGGAGATGGGTCA

Protein sequence

MGCGISKFEPKEVVEATADCPHNPPRSHKSSTTNCFTGEPKPSVQEGSTTEKQSRKGNGSSRDREVAGEKMVKMSVNVKREKVEEDDRQMETMTQINFEDPNDDQNYRKIFRGGSPSFREYCIGSKSRSRSIGSEDNYDGDHGIALVMATTTSPLTDLQFNIHFRKVEAMALNSSCFLSLPSYVRRNHRVPLRICLPLLHSSAIRRRRSLRNCLLLSSLFTLLSLNSKERNEWINSSIKTKLAKFLADRLRYYYFDRRLSSMGRLVVCAGNGAVQRSTNLALLRHSITFWIYLPLQMIAEEFAVDRSQLPVLGQITSQNQKLKDGYATADAPISLQSFMHILVSKISCLGELASNLGYDAFNAVTTEDKALEYFDFDVQWEEGDGS

Homology

[Close]

BLAST of Cp4.1LG03g06820 vs. Swiss-Prot
Match: SKL1_ARATH (Probable inactive shikimate kinase like 1, chloroplastic OS=Arabidopsis thaliana GN=SKL1 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 4.5e-14
Identity = 50/120 (41.67%), Postives = 70/120 (58.33%), Query Frame = 1


Query: 257 RRLSSMGRLVVCAGNGAVQRSTNLALLRHSITFWIYLPLQMIA----EEFAVDRSQLPVL 316
           ++LSSMGRLVVCAG+GAVQ   NLALLRH I+ WI +PL + A    + F  + S   + 
Sbjct: 154 KQLSSMGRLVVCAGDGAVQSLRNLALLRHGISIWIDVPLDITAKGDDDSFHSEPSP-ELF 213

Query: 317 GQITSQNQKLKDGYATADAPISLQSFMHILVSKISCLGELASNLGYDAFNAVTTEDKALE 373
             + +  +K + GY TAD  ISL+              ++A+ L ++   AVT+ED ALE
Sbjct: 214 DTLKASYEKSRKGYETADVSISLE--------------KIATKLEFEDLEAVTSEDIALE 258

[Close]

BLAST of Cp4.1LG03g06820 vs. Swiss-Prot
Match: SK3_ORYSJ (Shikimate kinase 3, chloroplastic OS=Oryza sativa subsp. japonica GN=SK3 PE=1 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 7.6e-06
Identity = 37/102 (36.27%), Postives = 52/102 (50.98%), Query Frame = 1


Query: 257 RRLSSMGRLVVCAGNGAVQRSTNLALLRHSITFWIYLPLQMIAEEF-AVDRSQLPVLGQ- 316
           R LSSM RLVV  G GAV R  N + ++   T W+ +PL  +A    AV  +  P+L Q 
Sbjct: 156 RDLSSMHRLVVATGGGAVIRPINWSYMKKGSTIWLDVPLDALARRIAAVGTASRPLLHQE 215

Query: 317 -----------ITSQNQKLKDGYATADAPISLQSFMHILVSK 346
                      +T+  ++  D YA ADA +SL+   HI V +
Sbjct: 216 SGDPYAKAYAKLTALFEQRMDSYANADARVSLE---HIAVKQ 254

[Close]

BLAST of Cp4.1LG03g06820 vs. TrEMBL
Match: A0A0A0LDF4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G509960 PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 4.0e-38
Identity = 129/309 (41.75%), Postives = 151/309 (48.87%), Query Frame = 1


Query: 144 IALVMATTTSPLTDLQFNIHFRKV--------------EAMALNSSCFLSL------PSY 203
           +A+   T  SPLTDLQFN H  K                ++  N+S  L +       S 
Sbjct: 1   MAMKFKTIVSPLTDLQFNTHLPKSEALALNSSFSLSLPSSLRRNNSLPLHICPPFIQSSA 60

Query: 204 VRRNHRVP--------------LRICLPLLHSSAIRRRRSLRNCLLLSSLFTLLSLNSKE 263
           +RR   +P               ++ +  L     ++   +   L  +S+F +       
Sbjct: 61  IRRRRSLPSSCLASDGTALNVEAKVTVDDLSLEVKKKAMDVAPELKGTSIFLV------- 120

Query: 264 RNEWINSSIKTKLAKFLADRLRYYYFD--------------------------------- 323
               INSSIKTKL K LAD LRYYYFD                                 
Sbjct: 121 ---GINSSIKTKLGKLLADVLRYYYFDSDSLVVEVSGGEAAAKLYKQSDEKGFQAFETEV 180

Query: 324 -RRLSSMGRLVVCAGNGAVQRSTNLALLRHSITFWIYLPLQMIAEEFAVDRSQLP----- 373
            ++LSSMGRLVVCAGNGAVQ STNLALLRH IT WI LPLQMIAEEFA DRSQ P     
Sbjct: 181 LKQLSSMGRLVVCAGNGAVQSSTNLALLRHGITLWIDLPLQMIAEEFAEDRSQHPVFDIS 240

[Close]

BLAST of Cp4.1LG03g06820 vs. TrEMBL
Match: A0A0D2V3U2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G083400 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.3e-24
Identity = 72/165 (43.64%), Postives = 95/165 (57.58%), Query Frame = 1


Query: 234 INSSIKTKLAKFLADRLRYYYFD--------------RRLSSMGRLVVCAGNGAVQRSTN 293
           +N+S+K+ L   LAD  RYYYFD              ++LSSMGRLVVCAG+GAVQ STN
Sbjct: 96  MNNSVKSSLGMLLADLFRYYYFDSDEKGFRESETEVLKQLSSMGRLVVCAGDGAVQNSTN 155

Query: 294 LALLRHSITFWIYLPLQMIAE------------EFAVDRSQLPVLGQITSQNQKLKDGYA 353
           LALLRH I+ WI +PL M+A+            E A+  S   VL Q+ +  + ++ GYA
Sbjct: 156 LALLRHGISIWIDVPLDMVAKGIIGNKSLLLSSEIAISGSYSEVLSQLMALYEDMRRGYA 215

Query: 354 TADAPISLQSFMHILVSKISCLGELASNLGYDAFNAVTTEDKALE 373
           TADA +SLQ              ++A  LGY+  +AVTTED  +E
Sbjct: 216 TADATVSLQ--------------KVAYQLGYEDMDAVTTEDITME 246

[Close]

BLAST of Cp4.1LG03g06820 vs. TrEMBL
Match: A0A072U987_MEDTR (Shikimate kinase OS=Medicago truncatula GN=MTR_6g033510 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 4.1e-22
Identity = 64/128 (50.00%), Postives = 82/128 (64.06%), Query Frame = 1


Query: 257 RRLSSMGRLVVCAGNGAVQRSTNLALLRHSITFWIYLPLQMIAEEFAVDRSQLP------ 316
           ++LSSMGRLVVCAGNGAVQ STNLALLRH ITFWI LPL+++A +   + +Q P      
Sbjct: 102 KQLSSMGRLVVCAGNGAVQNSTNLALLRHGITFWIDLPLEIVARDVTENPTQFPSFEIST 161

Query: 317 ------VLGQITSQNQKLKDGYATADAPISLQSFMHILVSKISCLGELASNLGYDAFNAV 373
                 V+ ++ +   K KDGYATADA ISLQ              ++AS LGY++ + +
Sbjct: 162 SGSYPEVMDELCALYNKYKDGYATADAIISLQ--------------KVASRLGYESLDDI 215

[Close]

BLAST of Cp4.1LG03g06820 vs. TrEMBL
Match: A0A072U7L4_MEDTR (Shikimate kinase OS=Medicago truncatula GN=MTR_6g033510 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 4.1e-22
Identity = 64/128 (50.00%), Postives = 82/128 (64.06%), Query Frame = 1


Query: 257 RRLSSMGRLVVCAGNGAVQRSTNLALLRHSITFWIYLPLQMIAEEFAVDRSQLP------ 316
           ++LSSMGRLVVCAGNGAVQ STNLALLRH ITFWI LPL+++A +   + +Q P      
Sbjct: 159 KQLSSMGRLVVCAGNGAVQNSTNLALLRHGITFWIDLPLEIVARDVTENPTQFPSFEIST 218

Query: 317 ------VLGQITSQNQKLKDGYATADAPISLQSFMHILVSKISCLGELASNLGYDAFNAV 373
                 V+ ++ +   K KDGYATADA ISLQ              ++AS LGY++ + +
Sbjct: 219 SGSYPEVMDELCALYNKYKDGYATADAIISLQ--------------KVASRLGYESLDDI 272

[Close]

BLAST of Cp4.1LG03g06820 vs. TrEMBL
Match: A0A072U7E9_MEDTR (Shikimate kinase OS=Medicago truncatula GN=MTR_6g033510 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 4.1e-22
Identity = 64/128 (50.00%), Postives = 82/128 (64.06%), Query Frame = 1


Query: 257 RRLSSMGRLVVCAGNGAVQRSTNLALLRHSITFWIYLPLQMIAEEFAVDRSQLP------ 316
           ++LSSMGRLVVCAGNGAVQ STNLALLRH ITFWI LPL+++A +   + +Q P      
Sbjct: 158 KQLSSMGRLVVCAGNGAVQNSTNLALLRHGITFWIDLPLEIVARDVTENPTQFPSFEIST 217

Query: 317 ------VLGQITSQNQKLKDGYATADAPISLQSFMHILVSKISCLGELASNLGYDAFNAV 373
                 V+ ++ +   K KDGYATADA ISLQ              ++AS LGY++ + +
Sbjct: 218 SGSYPEVMDELCALYNKYKDGYATADAIISLQ--------------KVASRLGYESLDDI 271

[Close]

BLAST of Cp4.1LG03g06820 vs. TAIR10
Match: AT3G26900.1 (AT3G26900.1 shikimate kinase like 1)

HSP 1 Score: 80.5 bits (197), Expect = 2.5e-15
Identity = 50/120 (41.67%), Postives = 70/120 (58.33%), Query Frame = 1


Query: 257 RRLSSMGRLVVCAGNGAVQRSTNLALLRHSITFWIYLPLQMIA----EEFAVDRSQLPVL 316
           ++LSSMGRLVVCAG+GAVQ   NLALLRH I+ WI +PL + A    + F  + S   + 
Sbjct: 154 KQLSSMGRLVVCAGDGAVQSLRNLALLRHGISIWIDVPLDITAKGDDDSFHSEPSP-ELF 213

Query: 317 GQITSQNQKLKDGYATADAPISLQSFMHILVSKISCLGELASNLGYDAFNAVTTEDKALE 373
             + +  +K + GY TAD  ISL+              ++A+ L ++   AVT+ED ALE
Sbjct: 214 DTLKASYEKSRKGYETADVSISLE--------------KIATKLEFEDLEAVTSEDIALE 258

[Close]

BLAST of Cp4.1LG03g06820 vs. NCBI nr
Match: gi|659098489|ref|XP_008450164.1| (PREDICTED: probable inactive shikimate kinase like 1, chloroplastic [Cucumis melo])

HSP 1 Score: 194.9 bits (494), Expect = 2.6e-46
Identity = 146/303 (48.18%), Postives = 163/303 (53.80%), Query Frame = 1


Query: 144 IALVMATTTSPLTDLQFNIHFRKVEAMALNSSCFLSLPSYVRRN-----HRVP------- 203
           +A+ + TT SPLTDLQFNIH  K EAMALNSS  LSLPS +RRN     H  P       
Sbjct: 1   MAMNLKTTVSPLTDLQFNIHLPKFEAMALNSSFSLSLPSSLRRNHSLPLHICPPFIQSSA 60

Query: 204 LRICLPLLHSSAIRRRRSLRNCLLLSSLFTL--LSLNSKERNE--------------WIN 263
           +R    L  S  +    SL     + +  T+  LSL  K++                 IN
Sbjct: 61  IRRRRSLPSSCLVSDGTSLN----VEAKVTVDDLSLEVKKKAMDVGPELKGTSIFLVGIN 120

Query: 264 SSIKTKLAKFLADRLRYYYFD----------------------------------RRLSS 323
           SSIKT L K LAD LRYYYFD                                  ++LSS
Sbjct: 121 SSIKTNLGKLLADVLRYYYFDSDSLVVEASGGEAAAKLYKQSDEKGFQASETEVLKQLSS 180

Query: 324 MGRLVVCAGNGAVQRSTNLALLRHSITFWIYLPLQMIAEEFAVDRSQLP----------- 373
           MGRLVVCAG+GAVQ STNLALLRH IT WI LPLQMIAEEFA DRSQ P           
Sbjct: 181 MGRLVVCAGSGAVQSSTNLALLRHGITLWIDLPLQMIAEEFAEDRSQHPVFDISTSGSYS 240

[Close]

BLAST of Cp4.1LG03g06820 vs. NCBI nr
Match: gi|449464238|ref|XP_004149836.1| (PREDICTED: probable inactive shikimate kinase like 1, chloroplastic [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 5.8e-38
Identity = 129/309 (41.75%), Postives = 151/309 (48.87%), Query Frame = 1


Query: 144 IALVMATTTSPLTDLQFNIHFRKV--------------EAMALNSSCFLSL------PSY 203
           +A+   T  SPLTDLQFN H  K                ++  N+S  L +       S 
Sbjct: 1   MAMKFKTIVSPLTDLQFNTHLPKSEALALNSSFSLSLPSSLRRNNSLPLHICPPFIQSSA 60

Query: 204 VRRNHRVP--------------LRICLPLLHSSAIRRRRSLRNCLLLSSLFTLLSLNSKE 263
           +RR   +P               ++ +  L     ++   +   L  +S+F +       
Sbjct: 61  IRRRRSLPSSCLASDGTALNVEAKVTVDDLSLEVKKKAMDVAPELKGTSIFLV------- 120

Query: 264 RNEWINSSIKTKLAKFLADRLRYYYFD--------------------------------- 323
               INSSIKTKL K LAD LRYYYFD                                 
Sbjct: 121 ---GINSSIKTKLGKLLADVLRYYYFDSDSLVVEVSGGEAAAKLYKQSDEKGFQAFETEV 180

Query: 324 -RRLSSMGRLVVCAGNGAVQRSTNLALLRHSITFWIYLPLQMIAEEFAVDRSQLP----- 373
            ++LSSMGRLVVCAGNGAVQ STNLALLRH IT WI LPLQMIAEEFA DRSQ P     
Sbjct: 181 LKQLSSMGRLVVCAGNGAVQSSTNLALLRHGITLWIDLPLQMIAEEFAEDRSQHPVFDIS 240

[Close]

BLAST of Cp4.1LG03g06820 vs. NCBI nr
Match: gi|828335623|ref|XP_012575455.1| (PREDICTED: probable inactive shikimate kinase like 1, chloroplastic isoform X2 [Cicer arietinum])

HSP 1 Score: 120.9 bits (302), Expect = 4.8e-24
Identity = 78/179 (43.58%), Postives = 95/179 (53.07%), Query Frame = 1


Query: 234 INSSIKTKLAKFLADRLRYYYF----------------------------------DRRL 293
           + SS+KT L K LAD LRYYYF                                   ++L
Sbjct: 141 MKSSLKTNLGKLLADELRYYYFDSDDLVEEALGGASVAKSIKERDELSFLESETEVLKQL 200

Query: 294 SSMGRLVVCAGNGAVQRSTNLALLRHSITFWIYLPLQMIAEEFAVDRSQL------PVLG 353
           S+MGRLVVCAGNGAVQ STNLALLRH IT WI LPL ++A + + D+ Q        V+ 
Sbjct: 201 SAMGRLVVCAGNGAVQNSTNLALLRHGITLWIDLPLDIVARDVSEDQIQFSSGSYPEVMD 260

Query: 354 QITSQNQKLKDGYATADAPISLQSFMHILVSKISCLGELASNLGYDAFNAVTTEDKALE 373
           ++ +   K KDGYATADA ISLQ              ++AS LGYD  + VTTED  LE
Sbjct: 261 ELGALYNKHKDGYATADAIISLQ--------------KVASQLGYDNLDDVTTEDMTLE 305

[Close]

BLAST of Cp4.1LG03g06820 vs. NCBI nr
Match: gi|502169802|ref|XP_004514688.1| (PREDICTED: probable inactive shikimate kinase like 1, chloroplastic isoform X1 [Cicer arietinum])

HSP 1 Score: 120.9 bits (302), Expect = 4.8e-24
Identity = 78/179 (43.58%), Postives = 95/179 (53.07%), Query Frame = 1


Query: 234 INSSIKTKLAKFLADRLRYYYF----------------------------------DRRL 293
           + SS+KT L K LAD LRYYYF                                   ++L
Sbjct: 141 MKSSLKTNLGKLLADELRYYYFDSDDLVEEALGGASVAKSIKERDELSFLESETEVLKQL 200

Query: 294 SSMGRLVVCAGNGAVQRSTNLALLRHSITFWIYLPLQMIAEEFAVDRSQL------PVLG 353
           S+MGRLVVCAGNGAVQ STNLALLRH IT WI LPL ++A + + D+ Q        V+ 
Sbjct: 201 SAMGRLVVCAGNGAVQNSTNLALLRHGITLWIDLPLDIVARDVSEDQIQFSSGSYPEVMD 260

Query: 354 QITSQNQKLKDGYATADAPISLQSFMHILVSKISCLGELASNLGYDAFNAVTTEDKALE 373
           ++ +   K KDGYATADA ISLQ              ++AS LGYD  + VTTED  LE
Sbjct: 261 ELGALYNKHKDGYATADAIISLQ--------------KVASQLGYDNLDDVTTEDMTLE 305

[Close]

BLAST of Cp4.1LG03g06820 vs. NCBI nr
Match: gi|763809442|gb|KJB76344.1| (hypothetical protein B456_012G083400 [Gossypium raimondii])

HSP 1 Score: 120.6 bits (301), Expect = 6.2e-24
Identity = 72/165 (43.64%), Postives = 95/165 (57.58%), Query Frame = 1


Query: 234 INSSIKTKLAKFLADRLRYYYFD--------------RRLSSMGRLVVCAGNGAVQRSTN 293
           +N+S+K+ L   LAD  RYYYFD              ++LSSMGRLVVCAG+GAVQ STN
Sbjct: 96  MNNSVKSSLGMLLADLFRYYYFDSDEKGFRESETEVLKQLSSMGRLVVCAGDGAVQNSTN 155

Query: 294 LALLRHSITFWIYLPLQMIAE------------EFAVDRSQLPVLGQITSQNQKLKDGYA 353
           LALLRH I+ WI +PL M+A+            E A+  S   VL Q+ +  + ++ GYA
Sbjct: 156 LALLRHGISIWIDVPLDMVAKGIIGNKSLLLSSEIAISGSYSEVLSQLMALYEDMRRGYA 215

Query: 354 TADAPISLQSFMHILVSKISCLGELASNLGYDAFNAVTTEDKALE 373
           TADA +SLQ              ++A  LGY+  +AVTTED  +E
Sbjct: 216 TADATVSLQ--------------KVAYQLGYEDMDAVTTEDITME 246

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g06820 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SKL1_ARATH	4.5e-14	41.67	Probable inactive shikimate kinase like 1, chloroplastic OS=Arabidopsis thaliana...	[more]
SK3_ORYSJ	7.6e-06	36.27	Shikimate kinase 3, chloroplastic OS=Oryza sativa subsp. japonica GN=SK3 PE=1 SV...	[more]

BLAST of Cp4.1LG03g06820 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDF4_CUCSA	4.0e-38	41.75	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G509960 PE=3 SV=1	[more]
A0A0D2V3U2_GOSRA	4.3e-24	43.64	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G083400 PE=4 SV=1	[more]
A0A072U987_MEDTR	4.1e-22	50.00	Shikimate kinase OS=Medicago truncatula GN=MTR_6g033510 PE=3 SV=1	[more]
A0A072U7L4_MEDTR	4.1e-22	50.00	Shikimate kinase OS=Medicago truncatula GN=MTR_6g033510 PE=3 SV=1	[more]
A0A072U7E9_MEDTR	4.1e-22	50.00	Shikimate kinase OS=Medicago truncatula GN=MTR_6g033510 PE=3 SV=1	[more]

BLAST of Cp4.1LG03g06820 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G26900.1	2.5e-15	41.67	shikimate kinase like 1	[more]

BLAST of Cp4.1LG03g06820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659098489\|ref\|XP_008450164.1\|	2.6e-46	48.18	PREDICTED: probable inactive shikimate kinase like 1, chloroplastic [Cucumis mel...	[more]
gi\|449464238\|ref\|XP_004149836.1\|	5.8e-38	41.75	PREDICTED: probable inactive shikimate kinase like 1, chloroplastic [Cucumis sat...	[more]
gi\|828335623\|ref\|XP_012575455.1\|	4.8e-24	43.58	PREDICTED: probable inactive shikimate kinase like 1, chloroplastic isoform X2 [...	[more]
gi\|502169802\|ref\|XP_004514688.1\|	4.8e-24	43.58	PREDICTED: probable inactive shikimate kinase like 1, chloroplastic isoform X1 [...	[more]
gi\|763809442\|gb\|KJB76344.1\|	6.2e-24	43.64	hypothetical protein B456_012G083400 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046394	carboxylic acid biosynthetic process
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0072330	monocarboxylic acid biosynthetic process
biological_process	GO:0006139	nucleobase-containing compound metabolic process
biological_process	GO:1901362	organic cyclic compound biosynthetic process
biological_process	GO:0019637	organophosphate metabolic process
biological_process	GO:0016310	phosphorylation
biological_process	GO:0009657	plastid organization
biological_process	GO:0044767	single-organism developmental process
biological_process	GO:0006520	cellular amino acid metabolic process
biological_process	GO:0000096	sulfur amino acid metabolic process
biological_process	GO:0044272	sulfur compound biosynthetic process
biological_process	GO:0008150	biological_process
biological_process	GO:1901605	alpha-amino acid metabolic process
biological_process	GO:0016043	cellular component organization
biological_process	GO:0044255	cellular lipid metabolic process
biological_process	GO:0006796	phosphate-containing compound metabolic process
biological_process	GO:0008610	lipid biosynthetic process
biological_process	GO:0042430	indole-containing compound metabolic process
biological_process	GO:0018130	heterocycle biosynthetic process
biological_process	GO:0006631	fatty acid metabolic process
biological_process	GO:0006725	cellular aromatic compound metabolic process
biological_process	GO:0034641	cellular nitrogen compound metabolic process
biological_process	GO:0046483	heterocycle metabolic process
biological_process	GO:0032787	monocarboxylic acid metabolic process
biological_process	GO:1901360	organic cyclic compound metabolic process
biological_process	GO:1901566	organonitrogen compound biosynthetic process
biological_process	GO:0006790	sulfur compound metabolic process
biological_process	GO:1901606	alpha-amino acid catabolic process
biological_process	GO:0009072	aromatic amino acid family metabolic process
biological_process	GO:0019438	aromatic compound biosynthetic process
biological_process	GO:0065007	biological regulation
biological_process	GO:0008652	cellular amino acid biosynthetic process
biological_process	GO:0044271	cellular nitrogen compound biosynthetic process
biological_process	GO:0006732	coenzyme metabolic process
biological_process	GO:0051188	cofactor biosynthetic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g06820.1	Cp4.1LG03g06820.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR21087	SHIKIMATE KINASE	coord: 234..372 score: 3.3
None	No IPR available	PANTHER	PTHR21087:SF4	INACTIVE SHIKIMATE KINASE LIKE 1, CHLOROPLASTIC-RELATED	coord: 234..372 score: 3.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG03g06820	CmaCh11G015350	Cucurbita maxima (Rimu)	cmacpeB145
Cp4.1LG03g06820	CmaCh14G007480	Cucurbita maxima (Rimu)	cmacpeB283
Cp4.1LG03g06820	CmoCh11G015870	Cucurbita moschata (Rifu)	cmocpeB124
Cp4.1LG03g06820	CmoCh14G007620	Cucurbita moschata (Rifu)	cmocpeB245
Cp4.1LG03g06820	ClCG05G013930	Watermelon (Charleston Gray)	cpewcgB555
Cp4.1LG03g06820	Lsi07G014980	Bottle gourd (USVL1VR-Ls)	cpelsiB518
Cp4.1LG03g06820	CsaV3_3G026770	Cucumber (Chinese Long) v3	cpecucB0758
Cp4.1LG03g06820	BhiUN548G18	Wax gourd	cpewgoB0803
Cp4.1LG03g06820	Carg15534	Silver-seed gourd	carcpeB0518
Cp4.1LG03g06820	Carg09637	Silver-seed gourd	carcpeB0613

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG03g06820	Cp4.1LG04g06230	Cucurbita pepo (Zucchini)	cpecpeB477

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG03g06820	Cucumber (Gy14) v1	cgycpeB0416
Cp4.1LG03g06820	Wild cucumber (PI 183967)	cpecpiB608
Cp4.1LG03g06820	Cucumber (Chinese Long) v2	cpecuB605
Cp4.1LG03g06820	Bottle gourd (USVL1VR-Ls)	cpelsiB511
Cp4.1LG03g06820	Watermelon (Charleston Gray)	cpewcgB560
Cp4.1LG03g06820	Watermelon (97103) v1	cpewmB609
Cp4.1LG03g06820	Melon (DHL92) v3.5.1	cpemeB582
Cp4.1LG03g06820	Melon (DHL92) v3.5.1	cpemeB584
Cp4.1LG03g06820	Cucumber (Gy14) v2	cgybcpeB402
Cp4.1LG03g06820	Cucumber (Gy14) v2	cgybcpeB407
Cp4.1LG03g06820	Melon (DHL92) v3.6.1	cpemedB695
Cp4.1LG03g06820	Cucumber (Chinese Long) v3	cpecucB0754
Cp4.1LG03g06820	Cucumber (Chinese Long) v3	cpecucB0760
Cp4.1LG03g06820	Wax gourd	cpewgoB0794