Carg15534 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg15534
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Shikimate kinase
Location	Cucurbita_argyrosperma_scaffold_059 : 83542 .. 87881 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATGGACTCGGGCCGGCGACCGTGGAGCTGGGAACTGGGAAGGATAAAGTGCTTTCTGTGGAGCGTTTTCTGTCCTCAGCGAGCTTCTCATGGCGATGAAAACCACCGTTTCTCCGCTTACTGATTTCCATTTCATCCACTCGCCAAAAGTTCAACCAATATCTCTGAATTCGAGCTACGCCTTGCCCCTGCCCTTCTCAGTTCGTTGTAATCAAAACCTCCCCCTTCATTTTCGCCGACGATTTCTGCACTCTTCTGCCATTCAGCGCCGTCGATCTCTGCCGTCGACTTGTTTCGTATCAGATGGAACTGCATACAGTGAGTTCAAGTTTTGAATTAATTTTCGTCCGTAGAATAACTCTGTAATCTGTTTGTGCTTCATTTTTTCTCACGACGACTCAATTTTTTCCGTAGTTCGCTTACATCTATTGTTTCACCAAGGTGAATTCATAGAAATGGCTTTTGAATTTTCCTCTAGTGAACTATGATTCAGTTAATTGGTTTATGAATGTTGTCTCTGCTTTAGGATAGTGCAATTCATTGGTCGGTCAGTTCACTTGGAACTGGATTGTCTAGTTTGCTAGAAATCACGATTGACAGATAAAACAGAGCCTTAGTTAGTTTAGTCCGAATACTGCTGCAAATCTGTGCAATTTAGTGAAACGCGCTTGTCTGAAGTTGGAGACTGGAGTTAAATTGATATCTAATTCAGTCAAATCATTTTAAGAATAAGAATGTAAAGGATGAATTCTCTAGTTTGAGCTTCATCTCTCTTTACTCAGTGATTTGTTTTGGCCTTTGTTAGATGTGGAGGCAAAGGCCACTACCGATGATCTGTCTCTTGAAGTGAAGGTTAGTGAACAGAAAGAATGGAAGAAACATAAGTTTTAAGCCTCAGAGAATCCTTTTTGTTCTTAATTTTTGCTCTATTTAAGTCTTGTTTCGTGATGGTGCGTTAAGATTGGTTTTAGTCGGCTTCATTTTTTTTGTAGCTTGAAGTGTTTATTTACACTGTTCAGTTTGAATTCAGAAGAAAGCAAAGGATGTAGCTCCTGAATTGAAAGGAACTTCCATCTTTCTCGTGGGTAAGCATTGATCATCTATTTTGGGGCAATTCATATTTATAACAAACTAATGTATGTAAAATTTTCATGTAGGGATCAACAGCTCCCTAAAAACTAAGTTGGGGAAACTCCTTGCTGATATGTTGAGATATTATTACTTTGACAGGTACTTCTTGAGGTACTTTTTTCTCATTTTGGCATGTGGTATTGCTCTCCTTCCTAACATTGCTAATTCTGAACTTCCATATGTCATATGCAAATGCATATAGTGATGGTTTGGTTGTGGAAGCTAGTGGTGGTGTGGCTGCTGCCAAACTTTATAAGGAGAGTGATGAAAATGGTTTTCGGGCATCTGAGGTAATTAACTCATGTTTATTGGTGATGCTTTATGTTGGGAATTTAGGGAATGATCATGGGTTTATAATCAAATAATACTATCTCCGTTGGTATGAAGCCTTTTGGGGAAGGCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCATGTTCCTCTAACACTTTGCCGACCAGAAATTATTTGGTCAAAACTGGTGGTTTACTAGTTCTTTATTGAGCTACATTTTTTTTTTCTTTTTCATTTTTGGTTACTGGTGATTGATTAATGAGTGTTCACTTTTTAGTGATCGAGCCTGTGAAAACATTGAGGCTCATGTACTTGAGGACTCTTATTGAACGTCCTTGGGTAATGCTTAACAAGACACTTTCTTTAAATTCTCTATAAAATCTAGTAACATGTACCTGACATGCCATTTGTTGCAGACTGAAGTGTTAAAACAATTATCTTCAATGGGTCGACTAGTTGTATGTGCTGGAAATGGTGCTGTTCGGAGCTCTACTAATCTGTATGAATGTTCAATGCTTAATTTTTCTGGTTTAGTGCACCCATTTTTCCATGAAACTTTTCTTTGTAGTTCCCTAAAGCAATTTTCAGTATTATTATGTTCATGTTGACATTTGATAAACATTTTACATGCAGGGCGCTTTTGAGGCATGGCATAACGTTATGGATTGATATACCCCTACAGATAATAGCAGAGGAATTTGCTGAAGATAGTGGGCAACTTCCAGTATTTGATATATCTACTTCTGGATCTTATTCAGAGGTAATTAAGGGTTTGTTTGGACTTGAAAGTGGTTTACGAAATAGTTTTACACCTTCTTTAACCCATTTTTGAGAACTGTAAACTAGTGGTTTTCTAAAATTTCTATTTACAGAGTTATGAATTTGAATAGAAAACTAATTTAATTTTTTCCAAAACAACACGTCATCCATAAAAACAATTTTCAAATTTCAAAGAACATGTGATGTCCCACGTTGATTGGGGAGGAGAACAAAACACCCTTTATAAGGGAGTTGAAACCTTCCCCTAGTAGACGCGTTTTAAAGCCTTGAGGGGAATCCCGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCTGTGGGCCTGGGTCGTTACAAAATGGTATCAGAGCTAGACACCGGACGATATGTCAGCCTTCTCACCCTTCCCCAAAGTGGGGTAGACACGAGGCGGTGTGCCAGTTAGGACGTTGGCCCCCAAAGGGGTGGACATGGTGGGGGTCACACATCAAATTGGAGAAAGGAACGAATGCCAGCGAGACCCAAAGAGAATAATATCTACTAGCGGTGAGCCTGGGTCGTTACAGAACAGCTATGCCAACATGTTTTCATGAAATTATTGTTCTAGAATCTTCTAAATCTGCTTGATTTTTCTAAATCTGCTTGATTTTTCTACTTAGGTTTTGAATTGACCTTTCTTGGTGCTTTTTTTTTCTTTCTTTTCATGATTTGAAACCATAGAAATCTTTCATTCCTTTTGCTATTCTTGTGTATAACTCAGGTGCTGGGTCAAATAACTTCCCTATACCAAGAAATAAAAGTAGGATATGCCACGGCTGATGCTTCAATATCACTCCAAAGTAAGTGATTCTGATCCTTCCCACACTTGCAATATGATCCAGGATTTCATGCATATTCTGGCTTCTAACATTTCCATGCCTCACAGAACTAGCAAGTACATTAGGATACGATGACTTCAATGCTGTTACAACCGAAGACATGGCTTTGGAGGTGTGAATCCTTGCACTACTTATACTTGCCCCCATTAACTACTGAGTCGGAATTGGAATCATAATTTTCATAAAAAAAAGTTTTACCTTCCAGCTTTATATACTATAATCTAGTTATGCTTTAGTTTTTAAACTTTTACGTTTGTCTAAAACGTCCTTCAATTTTAAAAATGTCAAAAAGAAGGGAGTTTTTAATATAGTGTCTTATATGTTACTAAAACATTAAAAAAAAATGGTCTATTGTCTAGTAGTATCTTACGCTTTCAATTTTGTGTTTAATAGGTTTGTAAATTAAAAAAAAAAAAAAATACAAATACCTAGTATATACTTTTAAATTTAAAAACCCAATTGAACCCAAAATTTAAAGTTAATAAACCTAATGTTTAGCCTCGTATAAATAACCATTTGGTTTTTTTATTTTTGTTTTTGAAAACTATGCTTCTTTTAATTATTACCATAGTTCTCATCTTTGGTACGAAAACATTTGAATTGAGAGTAATTTTTGAAGAACTATTTTGTTATTGTTTTCACTTGGTTTAAATAAAACATGGAATACTAGAAGACTATGATTTATAATCTTTCAACCTTAAAATTTATTTTGGTTCAAATCCCAGAGAATTTTGGAATGTTATAGCTACTCTAACCAGTAAGTTGCACTGCATCAATGACTTATTATGTTGGGATGTGTAACAGGCTCTGAAGGAGATAGAAAAGCTGATAAGAATGAAGAAGATGATGGAAGCAGCAGCAAAACCTTTTTAATAAAAAATGCAGCTCGTCTTCTATGGTGTTCATATAAAACGATCAAGAGCCCCAATCAGGTAGCTTTTAACCCATCTGGGGTAAGCCATTCTGGTCTGATAAGGATATATTTATTATAATCTTTCTCATGCTTGTTATTATCACATTGCAGTTTTCTCAAACTCCTTATTAATATTGTACTTGCAGAAAAAAAATTTAGAAGGCCAAACTAGTGTACTGACTCGAAAATCGTATCTTACTTGTGATTCATTTGAAAATGGAACATGTATACCTGATGATTTGTAATGCCGCAGATCCACTACTAGCAGATATTGTTCTCTTTAGGCTTTTCCTTTCGGGCTTCCCCTCAAGGCTTTAAAAACACATATGTTAGGG

mRNA sequence

TATGGACTCGGGCCGGCGACCGTGGAGCTGGGAACTGGGAAGGATAAAGTGCTTTCTGTGGAGCGTTTTCTGTCCTCAGCGAGCTTCTCATGGCGATGAAAACCACCGTTTCTCCGCTTACTGATTTCCATTTCATCCACTCGCCAAAAGTTCAACCAATATCTCTGAATTCGAGCTACGCCTTGCCCCTGCCCTTCTCAGTTCGTTGTAATCAAAACCTCCCCCTTCATTTTCGCCGACGATTTCTGCACTCTTCTGCCATTCAGCGCCGTCGATCTCTGCCGTCGACTTGTTTCGTATCAGATGGAACTGCATACAATGTGGAGGCAAAGGCCACTACCGATGATCTGTCTCTTGAAGTGAAGAAGAAAGCAAAGGATGTAGCTCCTGAATTGAAAGGAACTTCCATCTTTCTCGTGGGGATCAACAGCTCCCTAAAAACTAAGTTGGGGAAACTCCTTGCTGATATGTTGAGATATTATTACTTTGACAGGTACTTCTTGAGGTACTTTTTTCTCATTTTGGCATGTGTGATCGAGCCTGTGAAAACATTGAGGCTCATGTACTTGAGGACTCTTATTGAACGTCCTTGGACTGAAGTGTTAAAACAATTATCTTCAATGGGTCGACTAGTTGTATGTGCTGGAAATGGTGCTGTTCGGAGCTCTACTAATCTGGCGCTTTTGAGGCATGGCATAACGTTATGGATTGATATACCCCTACAGATAATAGCAGAGGAATTTGCTGAAGATAGTGGGCAACTTCCAGTATTTGATATATCTACTTCTGGATCTTATTCAGAGGTGCTGGGTCAAATAACTTCCCTATACCAAGAAATAAAAGTAGGATATGCCACGGCTGATGCTTCAATATCACTCCAAAAACTAGCAAGTACATTAGGATACGATGACTTCAATGCTGTTACAACCGAAGACATGGCTTTGGAGGCTCTGAAGGAGATAGAAAAGCTGATAAGAATGAAGAAGATGATGGAAGCAGCAGCAAAACCTTTTTAATAAAAAATGCAGCTCGTCTTCTATGGTGTTCATATAAAACGATCAAGAGCCCCAATCAGGTAGCTTTTAACCCATCTGGGGTAAGCCATTCTGGTCTGATAAGGATATATTTATTATAATCTTTCTCATGCTTGTTATTATCACATTGCAGTTTTCTCAAACTCCTTATTAATATTGTACTTGCAGAAAAAAAATTTAGAAGGCCAAACTAGTGTACTGACTCGAAAATCGTATCTTACTTGTGATTCATTTGAAAATGGAACATGTATACCTGATGATTTGTAATGCCGCAGATCCACTACTAGCAGATATTGTTCTCTTTAGGCTTTTCCTTTCGGGCTTCCCCTCAAGGCTTTAAAAACACATATGTTAGGG

Coding sequence (CDS)

ATGGCGATGAAAACCACCGTTTCTCCGCTTACTGATTTCCATTTCATCCACTCGCCAAAAGTTCAACCAATATCTCTGAATTCGAGCTACGCCTTGCCCCTGCCCTTCTCAGTTCGTTGTAATCAAAACCTCCCCCTTCATTTTCGCCGACGATTTCTGCACTCTTCTGCCATTCAGCGCCGTCGATCTCTGCCGTCGACTTGTTTCGTATCAGATGGAACTGCATACAATGTGGAGGCAAAGGCCACTACCGATGATCTGTCTCTTGAAGTGAAGAAGAAAGCAAAGGATGTAGCTCCTGAATTGAAAGGAACTTCCATCTTTCTCGTGGGGATCAACAGCTCCCTAAAAACTAAGTTGGGGAAACTCCTTGCTGATATGTTGAGATATTATTACTTTGACAGGTACTTCTTGAGGTACTTTTTTCTCATTTTGGCATGTGTGATCGAGCCTGTGAAAACATTGAGGCTCATGTACTTGAGGACTCTTATTGAACGTCCTTGGACTGAAGTGTTAAAACAATTATCTTCAATGGGTCGACTAGTTGTATGTGCTGGAAATGGTGCTGTTCGGAGCTCTACTAATCTGGCGCTTTTGAGGCATGGCATAACGTTATGGATTGATATACCCCTACAGATAATAGCAGAGGAATTTGCTGAAGATAGTGGGCAACTTCCAGTATTTGATATATCTACTTCTGGATCTTATTCAGAGGTGCTGGGTCAAATAACTTCCCTATACCAAGAAATAAAAGTAGGATATGCCACGGCTGATGCTTCAATATCACTCCAAAAACTAGCAAGTACATTAGGATACGATGACTTCAATGCTGTTACAACCGAAGACATGGCTTTGGAGGCTCTGAAGGAGATAGAAAAGCTGATAAGAATGAAGAAGATGATGGAAGCAGCAGCAAAACCTTTTTAA

Protein sequence

MAMKTTVSPLTDFHFIHSPKVQPISLNSSYALPLPFSVRCNQNLPLHFRRRFLHSSAIQRRRSLPSTCFVSDGTAYNVEAKATTDDLSLEVKKKAKDVAPELKGTSIFLVGINSSLKTKLGKLLADMLRYYYFDRYFLRYFFLILACVIEPVKTLRLMYLRTLIERPWTEVLKQLSSMGRLVVCAGNGAVRSSTNLALLRHGITLWIDIPLQIIAEEFAEDSGQLPVFDISTSGSYSEVLGQITSLYQEIKVGYATADASISLQKLASTLGYDDFNAVTTEDMALEALKEIEKLIRMKKMMEAAAKPF

Homology

[Close]

BLAST of Carg15534 vs. NCBI nr
Match: XP_022928567.1 (probable inactive shikimate kinase like 1, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 508.4 bits (1308), Expect = 1.6e-140
Identity = 277/309 (89.64%), Postives = 280/309 (90.61%), Query Frame = 0


Query: 1   MAMKTTVSPLTDFHF-IHSPKVQPISLNSSYALPLPFSVRCNQNLPLHFRRRFLHSSAIQ 60
           MAMKTTVSPLTDFHF IHSPK+QPISLNSSYALPLPFSVRCNQNLPLHFRRRFLHSSAIQ
Sbjct: 1   MAMKTTVSPLTDFHFNIHSPKIQPISLNSSYALPLPFSVRCNQNLPLHFRRRFLHSSAIQ 60

Query: 61  RRRSLPSTCFVSDGTAYNVEAKATTDDLSLEVKKKAKDVAPELKGTSIFLVGINSSLKTK 120
           RRRSLPSTCFVSDGTAYNVEAKATTDDLSLEVKKKAKDVAPELKGTSIFLVGINSSLKTK
Sbjct: 61  RRRSLPSTCFVSDGTAYNVEAKATTDDLSLEVKKKAKDVAPELKGTSIFLVGINSSLKTK 120

Query: 121 LGKLLADMLRYYYFDRYFLRYFFLILACVIEPVKTLRLMYLRTLIERPWTEVLKQLSSMG 180
           LGKLLADMLRYYYFDRY L    ++ A        L             TEVLKQLSSMG
Sbjct: 121 LGKLLADMLRYYYFDRYSLSDSLVVEASGGVAAAKLYKESDENGFRASETEVLKQLSSMG 180

Query: 181 RLVVCAGNGAVRSSTNLALLRHGITLWIDIPLQIIAEEFAEDSGQLPVFDISTSGSYSEV 240
           RLVVCAGNGAVRSSTNLALLRHGITLWIDIPLQIIAEEFAED GQLPVFDISTSGSYSEV
Sbjct: 181 RLVVCAGNGAVRSSTNLALLRHGITLWIDIPLQIIAEEFAEDRGQLPVFDISTSGSYSEV 240

Query: 241 LGQITSLYQEIKVGYATADASISLQKLASTLGYDDFNAVTTEDMALEALKEIEKLIRMKK 300
           LGQITSLYQEIKVGYATADASISLQKLASTLGYDDFNAVTTEDMALEALKEIEKLIRMKK
Sbjct: 241 LGQITSLYQEIKVGYATADASISLQKLASTLGYDDFNAVTTEDMALEALKEIEKLIRMKK 300

Query: 301 MMEAAAKPF 309
           MMEAAAKPF
Sbjct: 301 MMEAAAKPF 309

[Close]

BLAST of Carg15534 vs. NCBI nr
Match: XP_022928568.1 (probable inactive shikimate kinase like 1, chloroplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 500.0 bits (1286), Expect = 5.9e-138
Identity = 275/309 (89.00%), Postives = 278/309 (89.97%), Query Frame = 0


Query: 1   MAMKTTVSPLTDFHF-IHSPKVQPISLNSSYALPLPFSVRCNQNLPLHFRRRFLHSSAIQ 60
           MAMKTTVSPLTDFHF IHSPK+QPISLNSSYALPLPFSVRCNQNLPLHFRRRFLHSSAIQ
Sbjct: 1   MAMKTTVSPLTDFHFNIHSPKIQPISLNSSYALPLPFSVRCNQNLPLHFRRRFLHSSAIQ 60

Query: 61  RRRSLPSTCFVSDGTAYNVEAKATTDDLSLEVKKKAKDVAPELKGTSIFLVGINSSLKTK 120
           RRRSLPSTCFVSDGTAYNVEAKATTDDLSLEVKKKAKDVAPELKGTSIFLVGINSSLKTK
Sbjct: 61  RRRSLPSTCFVSDGTAYNVEAKATTDDLSLEVKKKAKDVAPELKGTSIFLVGINSSLKTK 120

Query: 121 LGKLLADMLRYYYFDRYFLRYFFLILACVIEPVKTLRLMYLRTLIERPWTEVLKQLSSMG 180
           LGKLLADMLRYYYFD   L    ++ A        L             TEVLKQLSSMG
Sbjct: 121 LGKLLADMLRYYYFDSDSL----VVEASGGVAAAKLYKESDENGFRASETEVLKQLSSMG 180

Query: 181 RLVVCAGNGAVRSSTNLALLRHGITLWIDIPLQIIAEEFAEDSGQLPVFDISTSGSYSEV 240
           RLVVCAGNGAVRSSTNLALLRHGITLWIDIPLQIIAEEFAED GQLPVFDISTSGSYSEV
Sbjct: 181 RLVVCAGNGAVRSSTNLALLRHGITLWIDIPLQIIAEEFAEDRGQLPVFDISTSGSYSEV 240

Query: 241 LGQITSLYQEIKVGYATADASISLQKLASTLGYDDFNAVTTEDMALEALKEIEKLIRMKK 300
           LGQITSLYQEIKVGYATADASISLQKLASTLGYDDFNAVTTEDMALEALKEIEKLIRMKK
Sbjct: 241 LGQITSLYQEIKVGYATADASISLQKLASTLGYDDFNAVTTEDMALEALKEIEKLIRMKK 300

Query: 301 MMEAAAKPF 309
           MMEAAAKPF
Sbjct: 301 MMEAAAKPF 305

[Close]

BLAST of Carg15534 vs. NCBI nr
Match: XP_022989694.1 (probable inactive shikimate kinase like 1, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 499.2 bits (1284), Expect = 1.0e-137
Identity = 272/309 (88.03%), Postives = 277/309 (89.64%), Query Frame = 0


Query: 1   MAMKTTVSPLTDFHF-IHSPKVQPISLNSSYALPLPFSVRCNQNLPLHFRRRFLHSSAIQ 60
           MAMKTTVSPLTDF F IH PK+QP+SLNSSYALPLPFSVRCNQNLPLHFRRRFLHSS IQ
Sbjct: 1   MAMKTTVSPLTDFQFNIHLPKIQPMSLNSSYALPLPFSVRCNQNLPLHFRRRFLHSSVIQ 60

Query: 61  RRRSLPSTCFVSDGTAYNVEAKATTDDLSLEVKKKAKDVAPELKGTSIFLVGINSSLKTK 120
           RRRSLPSTCFVSDGTAYNVEAKATTDDLSLEVKKKA DVAPELKGTSIFLVGINSSLKTK
Sbjct: 61  RRRSLPSTCFVSDGTAYNVEAKATTDDLSLEVKKKAMDVAPELKGTSIFLVGINSSLKTK 120

Query: 121 LGKLLADMLRYYYFDRYFLRYFFLILACVIEPVKTLRLMYLRTLIERPWTEVLKQLSSMG 180
           LGKLLADMLRYYYFDRYFL    ++ A        L             TEVLKQLSSMG
Sbjct: 121 LGKLLADMLRYYYFDRYFLSDGLVVEASGGVAAAKLYKESDENGFRASETEVLKQLSSMG 180

Query: 181 RLVVCAGNGAVRSSTNLALLRHGITLWIDIPLQIIAEEFAEDSGQLPVFDISTSGSYSEV 240
           RLVVCAGNGAVRSSTNLALLRHGITLWIDIPLQIIAEEFAED GQLPVFDISTSGSYSEV
Sbjct: 181 RLVVCAGNGAVRSSTNLALLRHGITLWIDIPLQIIAEEFAEDRGQLPVFDISTSGSYSEV 240

Query: 241 LGQITSLYQEIKVGYATADASISLQKLASTLGYDDFNAVTTEDMALEALKEIEKLIRMKK 300
           LGQITSLYQEIKVGYATADASISLQKLASTLGYDDFNAVTTEDMALEALKEIEKLIR+KK
Sbjct: 241 LGQITSLYQEIKVGYATADASISLQKLASTLGYDDFNAVTTEDMALEALKEIEKLIRVKK 300

Query: 301 MMEAAAKPF 309
           MMEAAAKPF
Sbjct: 301 MMEAAAKPF 309

[Close]

BLAST of Carg15534 vs. NCBI nr
Match: XP_023529266.1 (probable inactive shikimate kinase like 1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 492.7 bits (1267), Expect = 9.4e-136
Identity = 272/309 (88.03%), Postives = 275/309 (89.00%), Query Frame = 0


Query: 1   MAMKTTVSPLTDFHF-IHSPKVQPISLNSSYALPLPFSVRCNQNLPLHFRRRFLHSSAIQ 60
           MAMKTTVSPLTDFHF IHSPK+QPISLNSSYALPLPFSVRCNQNLPLH RRRFLHSSAIQ
Sbjct: 1   MAMKTTVSPLTDFHFNIHSPKIQPISLNSSYALPLPFSVRCNQNLPLHLRRRFLHSSAIQ 60

Query: 61  RRRSLPSTCFVSDGTAYNVEAKATTDDLSLEVKKKAKDVAPELKGTSIFLVGINSSLKTK 120
           RRRSLPSTC VSDGTAYNVEAKATTDDLSLEVKKKA DVAPELKGTSIFLVGINSSLKTK
Sbjct: 61  RRRSLPSTCLVSDGTAYNVEAKATTDDLSLEVKKKAMDVAPELKGTSIFLVGINSSLKTK 120

Query: 121 LGKLLADMLRYYYFDRYFLRYFFLILACVIEPVKTLRLMYLRTLIERPWTEVLKQLSSMG 180
           LGKLLADMLRYYYFD   L    ++ A        L             TEVLKQLSSMG
Sbjct: 121 LGKLLADMLRYYYFDSDGL----VVEASGGVAAAKLYKESDENGFRASETEVLKQLSSMG 180

Query: 181 RLVVCAGNGAVRSSTNLALLRHGITLWIDIPLQIIAEEFAEDSGQLPVFDISTSGSYSEV 240
           RLVVCAGNGAVRSSTNLALLRHGITLWIDIPLQIIAEEFAED GQLPVFDISTSGSYSEV
Sbjct: 181 RLVVCAGNGAVRSSTNLALLRHGITLWIDIPLQIIAEEFAEDRGQLPVFDISTSGSYSEV 240

Query: 241 LGQITSLYQEIKVGYATADASISLQKLASTLGYDDFNAVTTEDMALEALKEIEKLIRMKK 300
           LGQITSLYQEIKVGYATADASISLQKLASTLGYDDFNAVTTEDMALEALKEIEKLIRMKK
Sbjct: 241 LGQITSLYQEIKVGYATADASISLQKLASTLGYDDFNAVTTEDMALEALKEIEKLIRMKK 300

Query: 301 MMEAAAKPF 309
           MMEAAAKPF
Sbjct: 301 MMEAAAKPF 305

[Close]

BLAST of Carg15534 vs. NCBI nr
Match: XP_022989695.1 (probable inactive shikimate kinase like 1, chloroplastic isoform X2 [Cucurbita maxima])

HSP 1 Score: 487.6 bits (1254), Expect = 3.0e-134
Identity = 269/309 (87.06%), Postives = 274/309 (88.67%), Query Frame = 0


Query: 1   MAMKTTVSPLTDFHF-IHSPKVQPISLNSSYALPLPFSVRCNQNLPLHFRRRFLHSSAIQ 60
           MAMKTTVSPLTDF F IH PK+QP+SLNSSYALPLPFSVRCNQNLPLHFRRRFLHSS IQ
Sbjct: 1   MAMKTTVSPLTDFQFNIHLPKIQPMSLNSSYALPLPFSVRCNQNLPLHFRRRFLHSSVIQ 60

Query: 61  RRRSLPSTCFVSDGTAYNVEAKATTDDLSLEVKKKAKDVAPELKGTSIFLVGINSSLKTK 120
           RRRSLPSTCFVSDGTAYNVEAKATTDDLSLEVKKKA DVAPELKGTSIFLVGINSSLKTK
Sbjct: 61  RRRSLPSTCFVSDGTAYNVEAKATTDDLSLEVKKKAMDVAPELKGTSIFLVGINSSLKTK 120

Query: 121 LGKLLADMLRYYYFDRYFLRYFFLILACVIEPVKTLRLMYLRTLIERPWTEVLKQLSSMG 180
           LGKLLADMLRYYYFD   L    ++ A        L             TEVLKQLSSMG
Sbjct: 121 LGKLLADMLRYYYFDSDGL----VVEASGGVAAAKLYKESDENGFRASETEVLKQLSSMG 180

Query: 181 RLVVCAGNGAVRSSTNLALLRHGITLWIDIPLQIIAEEFAEDSGQLPVFDISTSGSYSEV 240
           RLVVCAGNGAVRSSTNLALLRHGITLWIDIPLQIIAEEFAED GQLPVFDISTSGSYSEV
Sbjct: 181 RLVVCAGNGAVRSSTNLALLRHGITLWIDIPLQIIAEEFAEDRGQLPVFDISTSGSYSEV 240

Query: 241 LGQITSLYQEIKVGYATADASISLQKLASTLGYDDFNAVTTEDMALEALKEIEKLIRMKK 300
           LGQITSLYQEIKVGYATADASISLQKLASTLGYDDFNAVTTEDMALEALKEIEKLIR+KK
Sbjct: 241 LGQITSLYQEIKVGYATADASISLQKLASTLGYDDFNAVTTEDMALEALKEIEKLIRVKK 300

Query: 301 MMEAAAKPF 309
           MMEAAAKPF
Sbjct: 301 MMEAAAKPF 305

[Close]

BLAST of Carg15534 vs. TAIR10
Match: AT3G26900.1 (shikimate kinase like 1)

HSP 1 Score: 192.6 bits (488), Expect = 3.6e-49
Identity = 118/219 (53.88%), Postives = 147/219 (67.12%), Query Frame = 0


Query: 91  VKKKAKDVAPELKGTSIFLVGINSSLKTKLGKLLADMLRYYYFDRYFLRYFFLILACVIE 150
           VK+KA D+APELKG SIFLVGIN+S+KT  GKLLA+ LRYYYFD        LI      
Sbjct: 76  VKRKAMDIAPELKGASIFLVGINNSIKTNTGKLLAEALRYYYFDS-----DNLITEAAGG 135

Query: 151 PVKTLRLMYL-RTLIERPWTEVLKQLSSMGRLVVCAGNGAVRSSTNLALLRHGITLWIDI 210
            V    L        +   TEVLKQLSSMGRLVVCAG+GAV+S  NLALLRHGI++WID+
Sbjct: 136 NVSAQALKEADEKAFQESETEVLKQLSSMGRLVVCAGDGAVQSLRNLALLRHGISIWIDV 195

Query: 211 PLQIIAEEFAEDSGQLPVFDISTSGSYSEVLGQITSLYQEIKVGYATADASISLQKLAST 270
           PL I A+   +D       D   S    E+   + + Y++ + GY TAD SISL+K+A+ 
Sbjct: 196 PLDITAK--GDD-------DSFHSEPSPELFDTLKASYEKSRKGYETADVSISLEKIATK 255

Query: 271 LGYDDFNAVTTEDMALEALKEIEKLIRMKKMMEAAAKPF 309
           L ++D  AVT+ED+ALE LKEIEKL R+KKMME A++PF
Sbjct: 256 LEFEDLEAVTSEDIALEILKEIEKLTRVKKMMEEASRPF 280

[Close]

BLAST of Carg15534 vs. TAIR10
Match: AT2G21940.4 (shikimate kinase 1)

HSP 1 Score: 90.1 bits (222), Expect = 2.5e-18
Identity = 60/213 (28.17%), Postives = 113/213 (53.05%), Query Frame = 0


Query: 91  VKKKAKDVAPELKGTSIFLVGINSSLKTKLGKLLADMLRYYYFDRYFLRYFFLILACVIE 150
           +K+KA++V P L G S++LVG+  S KT +GKL++ +L Y +FD   L    +  A    
Sbjct: 90  LKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTL----IEQAMNGT 149

Query: 151 PVKTLRLMYLRTLIERPWTEVLKQLSSMGRLVVCAGNGAVRSSTNLALLRHGITLWIDIP 210
            V  + + +         T+ LK+LSS  ++VV  G GAV    N   +  GI++W+D+P
Sbjct: 150 SVAEIFVHHGENFFRGKETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHKGISIWLDVP 209

Query: 211 LQIIAEEFAE-DSGQLPVFDISTSGSYSEVLGQITSLYQEIKVGYATADASISLQKLAST 270
           L+ +A   A   +   P+    +  +YS    ++++++           A +SL+ +A+ 
Sbjct: 210 LEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWXXXXXXXXXXXARVSLENIAAK 269

Query: 271 LGYDDFNAVTTEDMALEALKEIEKLIRMKKMME 303
            GY + + +T  ++A+EA +++   +  ++ ME
Sbjct: 270 RGYKNVSDLTPTEIAIEAFEQVLSFLEKEETME 298

[Close]

BLAST of Carg15534 vs. TAIR10
Match: AT4G39540.3 (shikimate kinase 2)

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-16
Identity = 65/222 (29.28%), Postives = 115/222 (51.80%), Query Frame = 0


Query: 91  VKKKAKDVAPELKGTSIFL--------VGINSSLKTKLGKLLADMLRYYYFDRYFLRYFF 150
           +KKKA++V P L G S++L        +G+  S KT +GK++A  L Y +FD   L    
Sbjct: 85  LKKKAEEVKPYLNGRSMYLLNSFLVNALGMMGSGKTTVGKIMARSLGYTFFDCDTL---- 144

Query: 151 LILACVIEPVKTLRLMYLRTLIERPWTEVLKQLSSM-GRLVVCAGNGAVRSSTNLALLRH 210
           +  A     V  +   +  ++     TE LK+LS M  ++VV  G GAV    N   +  
Sbjct: 145 IEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQVVVSTGGGAVIRPINWKYMHK 204

Query: 211 GITLWIDIPLQIIAEEFAE-DSGQLPVFDISTSG-SYSEVLGQITSLYQEIKVGYATADA 270
           GI++W+D+PL+ +A   A   +G  P+     SG +Y+  L ++++++      Y  A A
Sbjct: 205 GISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEAYTKASA 264

Query: 271 SISLQKLASTLGYDDFNAVTTEDMALEALKEIEKLIRMKKMM 302
            +SL+ +   LGY   + +T  ++A+EA ++++  +  +  M
Sbjct: 265 RVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSYLEKEDGM 302

[Close]

BLAST of Carg15534 vs. Swiss-Prot
Match: sp|Q9LW20|SKL1_ARATH (Probable inactive shikimate kinase like 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SKL1 PE=2 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 6.5e-48
Identity = 118/219 (53.88%), Postives = 147/219 (67.12%), Query Frame = 0


Query: 91  VKKKAKDVAPELKGTSIFLVGINSSLKTKLGKLLADMLRYYYFDRYFLRYFFLILACVIE 150
           VK+KA D+APELKG SIFLVGIN+S+KT  GKLLA+ LRYYYFD        LI      
Sbjct: 76  VKRKAMDIAPELKGASIFLVGINNSIKTNTGKLLAEALRYYYFDS-----DNLITEAAGG 135

Query: 151 PVKTLRLMYL-RTLIERPWTEVLKQLSSMGRLVVCAGNGAVRSSTNLALLRHGITLWIDI 210
            V    L        +   TEVLKQLSSMGRLVVCAG+GAV+S  NLALLRHGI++WID+
Sbjct: 136 NVSAQALKEADEKAFQESETEVLKQLSSMGRLVVCAGDGAVQSLRNLALLRHGISIWIDV 195

Query: 211 PLQIIAEEFAEDSGQLPVFDISTSGSYSEVLGQITSLYQEIKVGYATADASISLQKLAST 270
           PL I A+   +D       D   S    E+   + + Y++ + GY TAD SISL+K+A+ 
Sbjct: 196 PLDITAK--GDD-------DSFHSEPSPELFDTLKASYEKSRKGYETADVSISLEKIATK 255

Query: 271 LGYDDFNAVTTEDMALEALKEIEKLIRMKKMMEAAAKPF 309
           L ++D  AVT+ED+ALE LKEIEKL R+KKMME A++PF
Sbjct: 256 LEFEDLEAVTSEDIALEILKEIEKLTRVKKMMEEASRPF 280

[Close]

BLAST of Carg15534 vs. Swiss-Prot
Match: sp|Q7X7H9|SK3_ORYSJ (Shikimate kinase 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=SK3 PE=1 SV=2)

HSP 1 Score: 113.6 bits (283), Expect = 3.9e-24
Identity = 73/217 (33.64%), Postives = 120/217 (55.30%), Query Frame = 0


Query: 86  DLSLEVKKKAKDVAPELKGTSIFLVGINSSLKTKLGKLLADMLRYYYFDRYFLRYFFLIL 145
           D +L +K+KA+DV P L    I+LVG+  S KT +GK+LA++L Y +FD   L    +  
Sbjct: 73  DEALVLKQKAEDVVPYLNDRCIYLVGMMGSGKTTVGKILAEVLGYSFFDSDKL----VEK 132

Query: 146 ACVIEPVKTLRLMYLRTLIERPWTEVLKQLSSMGRLVVCAGNGAVRSSTNLALLRHGITL 205
           A  I  V  +  ++         +EVL+ LSSM RLVV  G GAV    N + ++ G T+
Sbjct: 133 AVGISSVAEIFQLHSEAFFRDNESEVLRDLSSMHRLVVATGGGAVIRPINWSYMKKGSTI 192

Query: 206 WIDIPLQIIAEEFAE-DSGQLPVFDISTSGSYSEVLGQITSLYQEIKVGYATADASISLQ 265
           W+D+PL  +A   A   +   P+    +   Y++   ++T+L+++    YA ADA +SL+
Sbjct: 193 WLDVPLDALARRIAAVGTASRPLLHQESGDPYAKAYAKLTALFEQRMDSYANADARVSLE 252

Query: 266 KLASTLGYDDFNAVTTEDMALEALKEIEKLIRMKKMM 302
            +A   G+ +   +T   +A+EAL ++E  +  K M+
Sbjct: 253 HIAVKQGHSNVTTLTPSAIAIEALLKMESFLTEKAMI 285

[Close]

BLAST of Carg15534 vs. Swiss-Prot
Match: sp|Q5NTH3|SK2_ORYSJ (Shikimate kinase 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=SK2 PE=1 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.1e-22
Identity = 70/211 (33.18%), Postives = 120/211 (56.87%), Query Frame = 0


Query: 86  DLSLEVKKKAKDVAPELKGTSIFLVGINSSLKTKLGKLLADMLRYYYFDRYFLRYFFLIL 145
           D +L +K+K+++V   L G  I+LVG+  S K+ + K+LA++L Y +FD   L    + +
Sbjct: 76  DEALLLKRKSEEVLFYLNGRCIYLVGMMGSGKSTVAKILAEVLGYSFFDSDKLVEQAVGM 135

Query: 146 ACVIEPVKTLRLMYLRTLIERPWTEVLKQLSSMGRLVVCAGNGAVRSSTNLALLRHGITL 205
             V +  K     + R       + VL+ LSSM RLVV  G GAV    N   ++ G+++
Sbjct: 136 PSVAQIFKEHSEAFFRD----NESSVLRDLSSMRRLVVATGGGAVIRPVNWKYMKKGLSV 195

Query: 206 WIDIPLQIIAEEFAE-DSGQLPVFDISTSGSYSEVLGQITSLYQEIKVGYATADASISLQ 265
           W+D+PL  +A   A+  +   P+ D  +S  Y+    +++ L ++    YA ADA +SL+
Sbjct: 196 WLDVPLDALARRIAQVGTASRPLLDQPSSDPYTAAFSKLSMLAEQRGDAYANADARVSLE 255

Query: 266 KLASTLGYDDFNAVTTEDMALEALKEIEKLI 296
           ++A+  G+DD + +T  D+A+EAL +IE  +
Sbjct: 256 EIAAKQGHDDVSKLTPTDIAIEALLKIENFV 282

[Close]

BLAST of Carg15534 vs. Swiss-Prot
Match: sp|Q5NTH4|SK1_ORYSJ (Shikimate kinase 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=SK1 PE=1 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.8e-21
Identity = 70/241 (29.05%), Postives = 129/241 (53.53%), Query Frame = 0


Query: 56  SAIQRRRSLPSTCFVSDGTAYNVEAKATTDDLSLEVKKKAKDVAPELKGTSIFLVGINSS 115
           +A+  R S P     +  ++   E    + D +L +K+K+++V   L G  I+LVG+  S
Sbjct: 48  AAVWARGSKPVAPLRAKKSSGGHETLHNSVDEALLLKRKSEEVLFYLNGRCIYLVGMMGS 107

Query: 116 LKTKLGKLLADMLRYYYFDRYFLRYFFLILACVIEPVKTLRLMYLRTLIERPWTEVLKQL 175
            K+ +GK+++++L Y +FD   L    +  A  +  V  +  ++         + VL+ L
Sbjct: 108 GKSTVGKIMSEVLGYSFFDSDKL----VEQAVGMPSVAQIFKVHSEAFFRDNESSVLRDL 167

Query: 176 SSMGRLVVCAGNGAVRSSTNLALLRHGITLWIDIPLQIIAEEFAE-DSGQLPVFDISTSG 235
           SSM RLVV  G GAV    N   ++ G+++W+D+PL  +A   A+  +   P+ D  +  
Sbjct: 168 SSMKRLVVATGGGAVIRPVNWKYMKKGLSVWLDVPLDALARRIAKVGTASRPLLDQPSGD 227

Query: 236 SYSEVLGQITSLYQEIKVGYATADASISLQKLASTLGYDDFNAVTTEDMALEALKEIEKL 295
            Y+    +++ L ++    YA AD  +SL+++AS  G+DD + +T  D+A+E+  +IE  
Sbjct: 228 PYTMAFSKLSMLAEQRGDAYANADVRVSLEEIASKQGHDDVSKLTPTDIAIESFHKIENF 284

[Close]

BLAST of Carg15534 vs. Swiss-Prot
Match: sp|Q8GY88|SK2_ARATH (Shikimate kinase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SK2 PE=1 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 5.4e-18
Identity = 66/214 (30.84%), Postives = 115/214 (53.74%), Query Frame = 0


Query: 91  VKKKAKDVAPELKGTSIFLVGINSSLKTKLGKLLADMLRYYYFDRYFLRYFFLILACVIE 150
           +KKKA++V P L G S++LVG+  S KT +GK++A  L Y +FD   L    +  A    
Sbjct: 85  LKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTL----IEQAMKGT 144

Query: 151 PVKTLRLMYLRTLIERPWTEVLKQLSSM-GRLVVCAGNGAVRSSTNLALLRHGITLWIDI 210
            V  +   +  ++     TE LK+LS M  ++VV  G GAV    N   +  GI++W+D+
Sbjct: 145 SVAEIFEHFGESVFREKETEALKKLSLMYHQVVVSTGGGAVIRPINWKYMHKGISIWLDV 204

Query: 211 PLQIIAEEFAE-DSGQLPVFDISTSG-SYSEVLGQITSLYQEIKVGYATADASISLQKLA 270
           PL+ +A   A   +G  P+     SG +Y+  L ++++++      Y  A A +SL+ + 
Sbjct: 205 PLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEAYTKASARVSLENIT 264

Query: 271 STLGYDDFNAVTTEDMALEALKEIEKLIRMKKMM 302
             LGY   + +T  ++A+EA ++++  +  +  M
Sbjct: 265 LKLGYRSVSDLTPAEIAIEAFEQVQSYLEKEDGM 294

[Close]

BLAST of Carg15534 vs. TrEMBL
Match: tr|A0A1S3BNN4|A0A1S3BNN4_CUCME (probable inactive shikimate kinase like 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491834 PE=3 SV=1)

HSP 1 Score: 404.1 bits (1037), Expect = 2.9e-109
Identity = 225/309 (72.82%), Postives = 252/309 (81.55%), Query Frame = 0


Query: 1   MAMKTTVSPLTDFHF-IHSPKVQPISLNSSYALPLPFSVRCNQNLPLHFRRRFLHSSAIQ 60
           M +KTTVSPLTD  F IH PK + ++LNSS++L LP S+R N +LPLH    F+ SSAI+
Sbjct: 3   MNLKTTVSPLTDLQFNIHLPKFEAMALNSSFSLSLPSSLRRNHSLPLHICPPFIQSSAIR 62

Query: 61  RRRSLPSTCFVSDGTAYNVEAKATTDDLSLEVKKKAKDVAPELKGTSIFLVGINSSLKTK 120
           RRRSLPS+C VSDGT+ NVEAK T DDLSLEVKKKA DV PELKGTSIFLVGINSS+KT 
Sbjct: 63  RRRSLPSSCLVSDGTSLNVEAKVTVDDLSLEVKKKAMDVGPELKGTSIFLVGINSSIKTN 122

Query: 121 LGKLLADMLRYYYFDRYFLRYFFLILACVIEPVKTLRLMYLRTLIERPWTEVLKQLSSMG 180
           LGKLLAD+LRYYYFD   L    ++ A   E    L         +   TEVLKQLSSMG
Sbjct: 123 LGKLLADVLRYYYFDSDSL----VVEASGGEAAAKLYKQSDEKGFQASETEVLKQLSSMG 182

Query: 181 RLVVCAGNGAVRSSTNLALLRHGITLWIDIPLQIIAEEFAEDSGQLPVFDISTSGSYSEV 240
           RLVVCAG+GAV+SSTNLALLRHGITLWID+PLQ+IAEEFAED  Q PVFDISTSGSYSEV
Sbjct: 183 RLVVCAGSGAVQSSTNLALLRHGITLWIDLPLQMIAEEFAEDRSQHPVFDISTSGSYSEV 242

Query: 241 LGQITSLYQEIKVGYATADASISLQKLASTLGYDDFNAVTTEDMALEALKEIEKLIRMKK 300
           LGQITS+YQ++K GYATADA ISLQKLAS LGYDDFNAVTTEDMA+EALKEIEKL R+KK
Sbjct: 243 LGQITSIYQKVKDGYATADALISLQKLASKLGYDDFNAVTTEDMAMEALKEIEKLTRVKK 302

Query: 301 MMEAAAKPF 309
           M+EAAAKPF
Sbjct: 303 MIEAAAKPF 307

[Close]

BLAST of Carg15534 vs. TrEMBL
Match: tr|A0A0A0LDF4|A0A0A0LDF4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G509960 PE=3 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 8.4e-109
Identity = 226/309 (73.14%), Postives = 249/309 (80.58%), Query Frame = 0


Query: 1   MAMKTTVSPLTDFHF-IHSPKVQPISLNSSYALPLPFSVRCNQNLPLHFRRRFLHSSAIQ 60
           M  KT VSPLTD  F  H PK + ++LNSS++L LP S+R N +LPLH    F+ SSAI+
Sbjct: 3   MKFKTIVSPLTDLQFNTHLPKSEALALNSSFSLSLPSSLRRNNSLPLHICPPFIQSSAIR 62

Query: 61  RRRSLPSTCFVSDGTAYNVEAKATTDDLSLEVKKKAKDVAPELKGTSIFLVGINSSLKTK 120
           RRRSLPS+C  SDGTA NVEAK T DDLSLEVKKKA DVAPELKGTSIFLVGINSS+KTK
Sbjct: 63  RRRSLPSSCLASDGTALNVEAKVTVDDLSLEVKKKAMDVAPELKGTSIFLVGINSSIKTK 122

Query: 121 LGKLLADMLRYYYFDRYFLRYFFLILACVIEPVKTLRLMYLRTLIERPWTEVLKQLSSMG 180
           LGKLLAD+LRYYYFD   L    ++     E    L         +   TEVLKQLSSMG
Sbjct: 123 LGKLLADVLRYYYFDSDSL----VVEVSGGEAAAKLYKQSDEKGFQAFETEVLKQLSSMG 182

Query: 181 RLVVCAGNGAVRSSTNLALLRHGITLWIDIPLQIIAEEFAEDSGQLPVFDISTSGSYSEV 240
           RLVVCAGNGAV+SSTNLALLRHGITLWID+PLQ+IAEEFAED  Q PVFDISTSGSYSEV
Sbjct: 183 RLVVCAGNGAVQSSTNLALLRHGITLWIDLPLQMIAEEFAEDRSQHPVFDISTSGSYSEV 242

Query: 241 LGQITSLYQEIKVGYATADASISLQKLASTLGYDDFNAVTTEDMALEALKEIEKLIRMKK 300
           LGQITSLYQ++K GYATADA ISLQKLAS LGYDDFNAVTTEDMA+EALKEIEKL R+KK
Sbjct: 243 LGQITSLYQKVKDGYATADALISLQKLASKLGYDDFNAVTTEDMAMEALKEIEKLTRVKK 302

Query: 301 MMEAAAKPF 309
           M+EAAAKPF
Sbjct: 303 MIEAAAKPF 307

[Close]

BLAST of Carg15534 vs. TrEMBL
Match: tr|A0A1R3JX40|A0A1R3JX40_9ROSI (Shikimate kinase OS=Corchorus olitorius OX=93759 GN=COLO4_13320 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.3e-64
Identity = 156/294 (53.06%), Postives = 196/294 (66.67%), Query Frame = 0


Query: 26  LNSSYALPLPFSVRCNQNLPLHFRRRFLH--------SSAIQR---RRSLPSTCFVSDGT 85
           +NS  + P   +      LP  F    LH        S  I R   RRSL S+C +S  T
Sbjct: 7   INSFLSNPPLHAPLFRSKLPCSFSATILHPTSHIPAQSLTISRPLFRRSLSSSCSLSQDT 66

Query: 86  AYNVEAKATTDDLSLEVKKKAKDVAPELKGTSIFLVGINSSLKTKLGKLLADMLRYYYFD 145
                 K  T D SL +KKKA DV+ +L+GTSIFLVG+N+SLK+ +GKLLAD+LRYYYFD
Sbjct: 67  DATSTTKVATVDSSLALKKKATDVSSDLRGTSIFLVGLNNSLKSSMGKLLADLLRYYYFD 126

Query: 146 RYFLRYFFLILACVIEPVKTLRLMYLRTLIERPWTEVLKQLSSMGRLVVCAGNGAVRSST 205
              L       A  +     L+    +   E   TEVLKQLSSMGRLVVCAG+GAV+SST
Sbjct: 127 SDAL---VSEAAGGVSAAIALKESDEKGFRESE-TEVLKQLSSMGRLVVCAGDGAVQSST 186

Query: 206 NLALLRHGITLWIDIPLQIIAEEFAEDSGQLPVFDISTSGSYSEVLGQITSLYQEIKVGY 265
           NLALLRHGI++WID+PL +IA+   ED  QL   +I+ SGSYSEVL QI +LY  ++ GY
Sbjct: 187 NLALLRHGISIWIDVPLDMIAKGIIEDKSQLLSSEIANSGSYSEVLSQIAALYGNLRTGY 246

Query: 266 ATADASISLQKLASTLGYDDFNAVTTEDMALEALKEIEKLIRMKKMMEAAAKPF 309
           ATADA++S+QKLA+ LGY+D +AV+TED+ +E LKEIEKL R+KKMME AA+PF
Sbjct: 247 ATADATVSIQKLANQLGYEDIDAVSTEDITMEVLKEIEKLTRVKKMMEEAARPF 296

[Close]

BLAST of Carg15534 vs. TrEMBL
Match: tr|A0A2P5FCA2|A0A2P5FCA2_9ROSA (Shikimate kinase/gluconokinase OS=Trema orientalis OX=63057 GN=TorRG33x02_089590 PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 1.1e-63
Identity = 158/307 (51.47%), Postives = 198/307 (64.50%), Query Frame = 0


Query: 3   MKTTVSPLTDFHFIHSPKVQPISLNSSYALPLPFSVRCNQNLPLHFRRRFLHSSAIQRRR 62
           M+ T + L  F+F   P  Q +             + C++    H     L  + IQ RR
Sbjct: 1   MEITTTTLHCFNFKTHPSEQVL-------------LTCSRLRAHHHHSSILIPNLIQCRR 60

Query: 63  SLPSTCFVSDGTA-YNVEAKATTDDLSLEVKKKAKDVAPELKGTSIFLVGINSSLKTKLG 122
            LP  C V+DG++  +  ++    D SL VKKKA D++PELKGTSIFLVG+NSS+KT LG
Sbjct: 61  PLPVACSVADGSSTSSASSRVAVHDPSLAVKKKASDISPELKGTSIFLVGMNSSIKTSLG 120

Query: 123 KLLADMLRYYYFDRYFLRYFFLILACVIEPVKTLRLMYLRTLIERPWTEVLKQLSSMGRL 182
           KLLA+ LRYYYFD   L          ++       +  R       TEVLKQLSSMGRL
Sbjct: 121 KLLAESLRYYYFDSDSLVEEAAGGKSAVKSFWETDELGFR----ESETEVLKQLSSMGRL 180

Query: 183 VVCAGNGAVRSSTNLALLRHGITLWIDIPLQIIAEEFAEDSGQLPVFDISTSGSYSEVLG 242
           VVCAGNGAV+SSTNL+LLRHGI++WID+PL ++A    ED G+L V D S    +SEV  
Sbjct: 181 VVCAGNGAVKSSTNLSLLRHGISVWIDVPLDMVASGSTEDQGEL-VSDASI--PHSEVFA 240

Query: 243 QITSLYQEIKVGYATADASISLQKLASTLGYDDFNAVTTEDMALEALKEIEKLIRMKKMM 302
           ++ SLY+E++ GYATAD +ISLQK+AS LGYDD NAVTTEDM LE LKEIE+L R+KKMM
Sbjct: 241 RLASLYEEMRDGYATADTTISLQKVASQLGYDDLNAVTTEDMTLEVLKEIERLTRVKKMM 287

Query: 303 EAAAKPF 309
           E AA PF
Sbjct: 301 EEAAAPF 287

[Close]

BLAST of Carg15534 vs. TrEMBL
Match: tr|A0A2K3MVD6|A0A2K3MVD6_TRIPR (Shikimate kinase OS=Trifolium pratense OX=57577 GN=L195_g017837 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.4e-63
Identity = 153/276 (55.43%), Postives = 185/276 (67.03%), Query Frame = 0


Query: 33  PLPFSVRCNQNLPLHFRRRFLHSSAIQRRRSLPSTCFVSDGTAYNVEAKATTDDLSLEVK 92
           P+P SV      P  FRRR  +SS      S P   F    +   V A     DLSL VK
Sbjct: 37  PIPTSV------PFQFRRRLTNSSI--NSSSSPDAIFPIPSSVTKVAAA----DLSLAVK 96

Query: 93  KKAKDVAPELKGTSIFLVGINSSLKTKLGKLLADMLRYYYFDRYFLRYFFLILACVIEPV 152
           KKA +V+ ELKG+SIFLVG+ SSLKT LGKLLAD+LRYYYFD   L    L  A V + +
Sbjct: 97  KKAAEVSSELKGSSIFLVGMKSSLKTNLGKLLADVLRYYYFDSDSLVEEALGGASVAKSL 156

Query: 153 KTLRLMYLRTLIERPWTEVLKQLSSMGRLVVCAGNGAVRSSTNLALLRHGITLWIDIPLQ 212
           K        T      TEVLKQLSSMGRLV+CAGNGAV++ TNLAL+RHGI+LWID+PL 
Sbjct: 157 KESD----ETSFYESETEVLKQLSSMGRLVICAGNGAVQNKTNLALVRHGISLWIDLPLD 216

Query: 213 IIAEEFAEDSGQLPVFDISTSGSYSEVLGQITSLYQEIKVGYATADASISLQKLASTLGY 272
            +A +  ED    P  DISTSGSY EV+ ++ +LY + K GYATADA ISLQK+A+ LGY
Sbjct: 217 TVARDVTEDQSPFPSSDISTSGSYPEVMDELAALYNKYKDGYATADAIISLQKVATRLGY 276

Query: 273 DDFNAVTTEDMALEALKEIEKLIRMKKMMEAAAKPF 309
           ++ + VTTED+ALE L E+EKL R+KKMME AA+PF
Sbjct: 277 ENLDDVTTEDVALEVLGEVEKLTRVKKMMEEAARPF 296

The following BLAST results are available for this feature:

BLAST of Carg15534 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022928567.1	1.6e-140	89.64	probable inactive shikimate kinase like 1, chloroplastic isoform X1 [Cucurbita m...	[more]
XP_022928568.1	5.9e-138	89.00	probable inactive shikimate kinase like 1, chloroplastic isoform X2 [Cucurbita m...	[more]
XP_022989694.1	1.0e-137	88.03	probable inactive shikimate kinase like 1, chloroplastic isoform X1 [Cucurbita m...	[more]
XP_023529266.1	9.4e-136	88.03	probable inactive shikimate kinase like 1, chloroplastic [Cucurbita pepo subsp. ...	[more]
XP_022989695.1	3.0e-134	87.06	probable inactive shikimate kinase like 1, chloroplastic isoform X2 [Cucurbita m...	[more]

BLAST of Carg15534 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G26900.1	3.6e-49	53.88	shikimate kinase like 1	[more]
AT2G21940.4	2.5e-18	28.17	shikimate kinase 1	[more]
AT4G39540.3	1.1e-16	29.28	shikimate kinase 2	[more]

BLAST of Carg15534 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LW20\|SKL1_ARATH	6.5e-48	53.88	Probable inactive shikimate kinase like 1, chloroplastic OS=Arabidopsis thaliana...	[more]
sp\|Q7X7H9\|SK3_ORYSJ	3.9e-24	33.64	Shikimate kinase 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=SK...	[more]
sp\|Q5NTH3\|SK2_ORYSJ	2.1e-22	33.18	Shikimate kinase 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=SK...	[more]
sp\|Q5NTH4\|SK1_ORYSJ	1.8e-21	29.05	Shikimate kinase 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=SK...	[more]
sp\|Q8GY88\|SK2_ARATH	5.4e-18	30.84	Shikimate kinase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SK2 PE=1 SV...	[more]

BLAST of Carg15534 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BNN4\|A0A1S3BNN4_CUCME	2.9e-109	72.82	probable inactive shikimate kinase like 1, chloroplastic OS=Cucumis melo OX=3656...	[more]
tr\|A0A0A0LDF4\|A0A0A0LDF4_CUCSA	8.4e-109	73.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G509960 PE=3 SV=1	[more]
tr\|A0A1R3JX40\|A0A1R3JX40_9ROSI	1.3e-64	53.06	Shikimate kinase OS=Corchorus olitorius OX=93759 GN=COLO4_13320 PE=3 SV=1	[more]
tr\|A0A2P5FCA2\|A0A2P5FCA2_9ROSA	1.1e-63	51.47	Shikimate kinase/gluconokinase OS=Trema orientalis OX=63057 GN=TorRG33x02_089590...	[more]
tr\|A0A2K3MVD6\|A0A2K3MVD6_TRIPR	2.4e-63	55.43	Shikimate kinase OS=Trifolium pratense OX=57577 GN=L195_g017837 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase
IPR031322	Shikimate/glucono_kinase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15534-RA	Carg15534-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01100	SHIKIMTKNASE	coord: 182..191 score: 39.23 coord: 202..219 score: 17.09 coord: 107..122 score: 37.02
None	No IPR available	GENE3D	G3DSA:3.40.50.300		coord: 89..306 e-value: 6.8E-37 score: 129.4
None	No IPR available	PANTHER	PTHR21087:SF4	INACTIVE SHIKIMATE KINASE LIKE 1, CHLOROPLASTIC-RELATED	coord: 35..308
None	No IPR available	PANTHER	PTHR21087	SHIKIMATE KINASE	coord: 35..308
IPR031322	Shikimate kinase/gluconokinase	PFAM	PF01202	SKI	coord: 166..258 e-value: 1.3E-9 score: 38.3
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 103..249

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg15534	Cla001042	Watermelon (97103) v1	carwmB0359
Carg15534	ClCG05G013940	Watermelon (Charleston Gray)	carwcgB0361
Carg15534	CmaCh11G015350	Cucurbita maxima (Rimu)	carcmaB0520
Carg15534	CmoCh11G015870	Cucurbita moschata (Rifu)	carcmoB0502
Carg15534	Lsi07G014980	Bottle gourd (USVL1VR-Ls)	carlsiB336
Carg15534	Cp4.1LG04g06230	Cucurbita pepo (Zucchini)	carcpeB0519
Carg15534	Cp4.1LG03g06820	Cucurbita pepo (Zucchini)	carcpeB0518
Carg15534	Cla97C05G095350	Watermelon (97103) v2	carwmbB0385
Carg15534	BhiUN548G18	Wax gourd	carwgoB0454

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg15534	Carg09637	Silver-seed gourd	carcarB397

The following block(s) are covering this gene:


Gene	Organism	Block
Carg15534	Silver-seed gourd	carcarB387
Carg15534	Cucumber (Gy14) v2	carcgybB0375
Carg15534	Cucurbita maxima (Rimu)	carcmaB0521
Carg15534	Cucurbita moschata (Rifu)	carcmoB0504
Carg15534	Cucumber (Chinese Long) v3	carcucB0399
Carg15534	Melon (DHL92) v3.5.1	carmeB0373
Carg15534	Melon (DHL92) v3.6.1	carmedB0378
Carg15534	Watermelon (97103) v2	carwmbB0388