CsaV3_3G011880 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G011880
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Description50S ribosomal protein L28
Locationchr3 : 9203196 .. 9204483 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTTTCATTCTATTGAAAATAAATAAATAATAAAATAGGTGGGCTTTTGTGGGCTTTTACTCAGCCCAAACACTATTATCCAGCTCAAGCCCAACAGCAAAAGAAGCTTATCCCCTTCTCCTCACAAAAACTCAACCAAACGCTCTTCCCATTTTACAAAGATAAACTCAATCGGTAACAATGGCAGCTTCTGTTGTCTTTGGCTTCACGCCGGCGGCCACTTGTTCCGGTGTAATGACAACCTCCTCAACCAAACTTCACTTCAGAACTAAACCCAATTCCGATCTAGGGTTCCTCACTTCTCAATTGAGCGGCATCAGAATCTCCTCCAACCACTCACTCATCTCCCCCGCTTCCATTTCTACTGCTCCTCTCAGGCCTTCCCTTCAACCTGTTGCTCGTAATATCTCCCTCTCTTGTCTCTCGTTTATTGTTTTGCTATATTTCATTTGTTTAACTTCAAGCTCTTTTTGGGCTCTATTTGAATTAATTGTATGGCTATGGCTGAAGCATTTTCTATTTCAATTAGGTTTCCTAATTCACCCATTATTTTCTGATTCCATTTTGGGCTATTTATAATTTCTGAATTGGGAACCTTCTCAAACCTTGTGGATTCATTATTTGTTGTTTCAGGTAGAATTTGTCCATTTACTGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCTTTCTCCAACCACAAGACCAAGAAATTGCAGTTTGTGAATCTTCAATACAAGAAGGTTTGGTGGGAAGCTGGTAAGCGTTTTGTGAAATTACGTTTGTCAACTAAGGCTTTGAAGACTATTGAGAAGAATGGACTTGATGCTGTGGCTAAGAAGGCTGGAATTGATCTTCGTAAAGAATGATATGGTAATTCATGACACTCAATCTTAACTCATTTAGAATTTGAGGAAGATTTGTTTGTATTCCTGCTGTTTTTGCCTCTTCTTGTTGTTAGTCATCTGTTTATTTTTCATGGTCACAGTATTCTTGTATCTTTGCTTTCCTTCCTCCATTTGTCAATGAAGCTGAAAAATCCATCCTCTTTCCCTTCTGGGTTTTCTGAATGTTACATTTTCTTAGAAGTTCAGCTAAAATGATCTTACAATTTTCATAGAAAGCTATGAGAAGCCAAGAATTTTAAACTTATTTAAGAAGATACAAAAAATTGTTGGTTCCTCATCGCTTTCTCGAATCATCTCTATGGCTGAAGAAAGGGATTAGGCAAATTGCTGCACTTTATATTGATGTGTGATAATCTAAGAATTGAGAGTTCTTCAAGCAAAC

mRNA sequence

ATGGCAGCTTCTGTTGTCTTTGGCTTCACGCCGGCGGCCACTTGTTCCGGTGTAATGACAACCTCCTCAACCAAACTTCACTTCAGAACTAAACCCAATTCCGATCTAGGGTTCCTCACTTCTCAATTGAGCGGCATCAGAATCTCCTCCAACCACTCACTCATCTCCCCCGCTTCCATTTCTACTGCTCCTCTCAGGCCTTCCCTTCAACCTGTTGCTCGTAGAATTTGTCCATTTACTGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCTTTCTCCAACCACAAGACCAAGAAATTGCAGTTTGTGAATCTTCAATACAAGAAGGTTTGGTGGGAAGCTGGTAAGCGTTTTGTGAAATTACGTTTGTCAACTAAGGCTTTGAAGACTATTGAGAAGAATGGACTTGATGCTGTGGCTAAGAAGGCTGGAATTGATCTTCGTAAAGAATGA

Coding sequence (CDS)

ATGGCAGCTTCTGTTGTCTTTGGCTTCACGCCGGCGGCCACTTGTTCCGGTGTAATGACAACCTCCTCAACCAAACTTCACTTCAGAACTAAACCCAATTCCGATCTAGGGTTCCTCACTTCTCAATTGAGCGGCATCAGAATCTCCTCCAACCACTCACTCATCTCCCCCGCTTCCATTTCTACTGCTCCTCTCAGGCCTTCCCTTCAACCTGTTGCTCGTAGAATTTGTCCATTTACTGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCTTTCTCCAACCACAAGACCAAGAAATTGCAGTTTGTGAATCTTCAATACAAGAAGGTTTGGTGGGAAGCTGGTAAGCGTTTTGTGAAATTACGTTTGTCAACTAAGGCTTTGAAGACTATTGAGAAGAATGGACTTGATGCTGTGGCTAAGAAGGCTGGAATTGATCTTCGTAAAGAATGA

Protein sequence

MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Homology
[Close]
BLAST of CsaV3_3G011880 vs. NCBI nr
Match: XP_004134049.1 (PREDICTED: 50S ribosomal protein L28, chloroplastic [Cucumis sativus] >KGN56833.1 hypothetical protein Csa_3G134810 [Cucumis sativus])

HSP 1 Score: 288.9 bits (738), Expect = 1.0e-74
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0 

Query: 1   MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASI 60
           MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASI
Sbjct: 1   MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASI 60

Query: 61  STAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           STAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  STAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 151
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150

[Close]
BLAST of CsaV3_3G011880 vs. NCBI nr
Match: XP_008438484.1 (PREDICTED: 50S ribosomal protein L28, chloroplastic [Cucumis melo])

HSP 1 Score: 260.0 bits (663), Expect = 5.0e-66
Identity = 135/150 (90.00%), Postives = 139/150 (92.67%), Query Frame = 0 

Query: 1   MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASI 60
           MAASVVFGFTPAAT +GVM TSSTKLHFRTKPNSDLGFL SQLSGI+ISSNHSLISP+  
Sbjct: 1   MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPX 60

Query: 61  STAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
                 PSLQP+ARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  XXXXXXPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 151
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150

[Close]
BLAST of CsaV3_3G011880 vs. NCBI nr
Match: XP_022979375.1 (50S ribosomal protein L28, chloroplastic [Cucurbita maxima])

HSP 1 Score: 248.4 bits (633), Expect = 1.5e-62
Identity = 131/150 (87.33%), Postives = 140/150 (93.33%), Query Frame = 0 

Query: 1   MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASI 60
           MA S V GFTP ++ SGVM  SS+KLHFRTKPN +LGFL+SQLSGI+ISSNHSLISP+ I
Sbjct: 1   MAVSAVLGFTPVSS-SGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPI 60

Query: 61  STAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           S APLRP+LQPVARR+CPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  S-APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 151
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]
BLAST of CsaV3_3G011880 vs. NCBI nr
Match: XP_023526300.1 (50S ribosomal protein L28, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 243.8 bits (621), Expect = 3.7e-61
Identity = 129/150 (86.00%), Postives = 138/150 (92.00%), Query Frame = 0 

Query: 1   MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASI 60
           MA S V GFTP  + SGVM  SS+KLHFRTKPN +LGFL+SQLSGI+ISSNHSLIS + I
Sbjct: 1   MAVSAVLGFTPVCS-SGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISSSPI 60

Query: 61  STAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           S APLRP+LQPVARR+CPFTGKKAN+KNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  S-APLRPALQPVARRVCPFTGKKANRKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 151
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]
BLAST of CsaV3_3G011880 vs. NCBI nr
Match: XP_022924246.1 (50S ribosomal protein L28, chloroplastic [Cucurbita moschata])

HSP 1 Score: 240.4 bits (612), Expect = 4.1e-60
Identity = 128/150 (85.33%), Postives = 137/150 (91.33%), Query Frame = 0 

Query: 1   MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASI 60
           MA S V GFTP  + SGVM  SS+KLHFR+K N +LGFL+SQLSGI+ISSNHSLIS + I
Sbjct: 1   MAVSAVLGFTPVCS-SGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPI 60

Query: 61  STAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           S APLRP+LQPVARR+CPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  S-APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 151
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]
BLAST of CsaV3_3G011880 vs. TAIR10
Match: AT2G33450.1 (Ribosomal L28 family)

HSP 1 Score: 174.9 bits (442), Expect = 3.8e-44
Identity = 98/134 (73.13%), Postives = 111/134 (82.84%), Query Frame = 0 

Query: 19  MTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHS-LISPASISTAPLRPSLQP-VARRI 78
           MT+S+  +   T  + +LGFLTSQLSG+RIS   S +I+  S+   P  P +QP VARRI
Sbjct: 13  MTSSAKSMTKSTVTSKELGFLTSQLSGLRISYTPSDVINRISL---PSFPGIQPIVARRI 72

Query: 79  CPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGL 138
           CPFTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEAGKRFVKLRLSTKALKTIEKNGL
Sbjct: 73  CPFTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGL 132

Query: 139 DAVAKKAGIDLRKE 151
           DAVAKKAGIDLRK+
Sbjct: 133 DAVAKKAGIDLRKK 143

[Close]
BLAST of CsaV3_3G011880 vs. Swiss-Prot
Match: sp|P82245|RK28_SPIOL (50S ribosomal protein L28, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL28 PE=1 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 5.7e-45
Identity = 101/145 (69.66%), Postives = 116/145 (80.00%), Query Frame = 0 

Query: 16  SGVMTTSSTKLHFR-------TKPN---SDLGFLTSQLSGIRISSNHSLISPASISTAPL 75
           SG++ ++ + + FR        KP    S+LGFLTSQLSGI+IS +      +   +APL
Sbjct: 4   SGMLISNPSNVCFRKPQFSCSLKPKATVSELGFLTSQLSGIQISPSPLFPIISKPISAPL 63

Query: 76  RPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLST 135
           +PSLQPVARRICPFTGKK+NK N VS SNHKTK+LQFVNLQYK+VWWEAGKRFVKLRLST
Sbjct: 64  KPSLQPVARRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLRLST 123

Query: 136 KALKTIEKNGLDAVAKKAGIDLRKE 151
           KALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 124 KALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]
BLAST of CsaV3_3G011880 vs. Swiss-Prot
Match: sp|P30956|RK28_TOBAC (50S ribosomal protein L28, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL28 PE=1 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.6e-44
Identity = 91/122 (74.59%), Postives = 108/122 (88.52%), Query Frame = 0 

Query: 29  RTKPNSDLGFLTSQLSGIRISSNHSLISPASISTAPLRPSLQPVARRICPFTGKKANKKN 88
           ++K +S+L F+TSQLSG++ISS H + S A +S  P +PSLQPVARRICPFTGKK+N+ N
Sbjct: 31  QSKLSSELSFVTSQLSGLKISSTHFISSSAPLS-VPFKPSLQPVARRICPFTGKKSNRAN 90

Query: 89  LVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLR 148
            VS SNHKTKKLQFVNLQYK++WWEAGKR+VKLRLSTKA+KTIEKNGLDAVAKKAGIDL 
Sbjct: 91  KVSHSNHKTKKLQFVNLQYKRIWWEAGKRYVKLRLSTKAIKTIEKNGLDAVAKKAGIDLS 150

Query: 149 KE 151
           K+
Sbjct: 151 KK 151

[Close]
BLAST of CsaV3_3G011880 vs. Swiss-Prot
Match: sp|O22795|RK28_ARATH (50S ribosomal protein L28, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL28 PE=2 SV=2)

HSP 1 Score: 174.9 bits (442), Expect = 6.9e-43
Identity = 98/134 (73.13%), Postives = 111/134 (82.84%), Query Frame = 0 

Query: 19  MTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHS-LISPASISTAPLRPSLQP-VARRI 78
           MT+S+  +   T  + +LGFLTSQLSG+RIS   S +I+  S+   P  P +QP VARRI
Sbjct: 13  MTSSAKSMTKSTVTSKELGFLTSQLSGLRISYTPSDVINRISL---PSFPGIQPIVARRI 72

Query: 79  CPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGL 138
           CPFTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEAGKRFVKLRLSTKALKTIEKNGL
Sbjct: 73  CPFTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGL 132

Query: 139 DAVAKKAGIDLRKE 151
           DAVAKKAGIDLRK+
Sbjct: 133 DAVAKKAGIDLRKK 143

[Close]
BLAST of CsaV3_3G011880 vs. Swiss-Prot
Match: sp|Q8DG62|RL28_THEEB (50S ribosomal protein L28 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rpmB PE=3 SV=2)

HSP 1 Score: 99.8 bits (247), Expect = 2.8e-20
Identity = 47/75 (62.67%), Postives = 60/75 (80.00%), Query Frame = 0 

Query: 75  RICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKN 134
           R+C  TGKKAN    +S S+ +TKKLQ VNLQ+K+VWW  GKR+V+LRLSTKA+KT+E+ 
Sbjct: 3   RVCQLTGKKANNAYAISHSHRRTKKLQQVNLQWKRVWWPEGKRWVRLRLSTKAIKTLERK 62

Query: 135 GLDAVAKKAGIDLRK 150
           GL A AK+AG+DL K
Sbjct: 63  GLSAFAKEAGLDLNK 77

[Close]
BLAST of CsaV3_3G011880 vs. Swiss-Prot
Match: sp|B8HUV7|RL28_CYAP4 (50S ribosomal protein L28 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=rpmB PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 4.8e-20
Identity = 47/75 (62.67%), Postives = 60/75 (80.00%), Query Frame = 0 

Query: 75  RICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKN 134
           R+C  TGK+AN    VS S+ +TKKLQ VNLQ+K++WW  GKR+V+LRLSTKALKT+E  
Sbjct: 3   RVCQLTGKRANNAYAVSHSHRRTKKLQEVNLQWKRIWWPQGKRWVRLRLSTKALKTLEHK 62

Query: 135 GLDAVAKKAGIDLRK 150
           GLD+ A++AGIDL K
Sbjct: 63  GLDSFAREAGIDLNK 77

[Close]
BLAST of CsaV3_3G011880 vs. TrEMBL
Match: tr|A0A0A0L501|A0A0A0L501_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134810 PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 6.7e-75
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0 

Query: 1   MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASI 60
           MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASI
Sbjct: 1   MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASI 60

Query: 61  STAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           STAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  STAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 151
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150

[Close]
BLAST of CsaV3_3G011880 vs. TrEMBL
Match: tr|A0A1S3AWK5|A0A1S3AWK5_CUCME (50S ribosomal protein L28, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483567 PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 3.3e-66
Identity = 135/150 (90.00%), Postives = 139/150 (92.67%), Query Frame = 0 

Query: 1   MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASI 60
           MAASVVFGFTPAAT +GVM TSSTKLHFRTKPNSDLGFL SQLSGI+ISSNHSLISP+  
Sbjct: 1   MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPX 60

Query: 61  STAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
                 PSLQP+ARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  XXXXXXPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 151
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150

[Close]
BLAST of CsaV3_3G011880 vs. TrEMBL
Match: tr|A0A061EN89|A0A061EN89_THECC (Ribosomal L28 family OS=Theobroma cacao OX=3641 GN=TCM_020946 PE=3 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 2.7e-44
Identity = 96/123 (78.05%), Postives = 109/123 (88.62%), Query Frame = 0 

Query: 29  RTKPNSD-LGFLTSQLSGIRISSNHSLISPASISTAPLRPSLQPVARRICPFTGKKANKK 88
           +T+P+S  LGF+TSQLSG++IS N   ++P    +AP  P+L+PVARR+CPFTGKKANK 
Sbjct: 22  KTRPSSQLLGFVTSQLSGVKISYNIPDLAPIKPISAPFTPALRPVARRVCPFTGKKANKA 81

Query: 89  NLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDL 148
           N VSFSNHKTKKLQFVNLQYKKVWWEAGKR+VKLRLSTKALKTIEKNGLDAVAKKAGIDL
Sbjct: 82  NKVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDL 141

Query: 149 RKE 151
           RKE
Sbjct: 142 RKE 144

[Close]
BLAST of CsaV3_3G011880 vs. TrEMBL
Match: tr|A0A0B0P4T1|A0A0B0P4T1_GOSAR (50S ribosomal L28, chloroplastic OS=Gossypium arboreum OX=29729 GN=F383_24851 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.0e-43
Identity = 98/124 (79.03%), Postives = 109/124 (87.90%), Query Frame = 0 

Query: 29  RTKPNSD-LGFLTSQLSGIRISSN-HSLISPASISTAPLRPSLQPVARRICPFTGKKANK 88
           +T P+S  LGF+TSQLSGI+IS N   +++P    ++P  P+LQPVARRICPFTGKKANK
Sbjct: 22  KTNPSSPFLGFVTSQLSGIKISCNLPVVVAPLKPISSPFTPALQPVARRICPFTGKKANK 81

Query: 89  KNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGID 148
            N VSFSNHKTKKLQFVNLQYKKVWWEAGKR+VKLRLSTKALKTIEKNGLDAVAKKAGID
Sbjct: 82  ANKVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGID 141

Query: 149 LRKE 151
           LRKE
Sbjct: 142 LRKE 145

[Close]
BLAST of CsaV3_3G011880 vs. TrEMBL
Match: tr|A0A1U8MWX0|A0A1U8MWX0_GOSHI (50S ribosomal protein L28, chloroplastic-like OS=Gossypium hirsutum OX=3635 GN=LOC107942210 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.0e-43
Identity = 98/124 (79.03%), Postives = 109/124 (87.90%), Query Frame = 0 

Query: 29  RTKPNSD-LGFLTSQLSGIRISSN-HSLISPASISTAPLRPSLQPVARRICPFTGKKANK 88
           +T P+S  LGF+TSQLSGI+IS N   +++P    ++P  P+LQPVARRICPFTGKKANK
Sbjct: 22  KTNPSSPFLGFVTSQLSGIKISCNLPVVVAPLKPISSPFTPALQPVARRICPFTGKKANK 81

Query: 89  KNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGID 148
            N VSFSNHKTKKLQFVNLQYKKVWWEAGKR+VKLRLSTKALKTIEKNGLDAVAKKAGID
Sbjct: 82  ANKVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGID 141

Query: 149 LRKE 151
           LRKE
Sbjct: 142 LRKE 145

The following BLAST results are available for this feature:
BLAST of CsaV3_3G011880 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004134049.11.0e-74100.00PREDICTED: 50S ribosomal protein L28, chloroplastic [Cucumis sativus] >KGN56833.... [more]
XP_008438484.15.0e-6690.00PREDICTED: 50S ribosomal protein L28, chloroplastic [Cucumis melo][more]
XP_022979375.11.5e-6287.3350S ribosomal protein L28, chloroplastic [Cucurbita maxima][more]
XP_023526300.13.7e-6186.0050S ribosomal protein L28, chloroplastic [Cucurbita pepo subsp. pepo][more]
XP_022924246.14.1e-6085.3350S ribosomal protein L28, chloroplastic [Cucurbita moschata][more]
BLAST of CsaV3_3G011880 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G33450.13.8e-4473.13Ribosomal L28 family[more]
BLAST of CsaV3_3G011880 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P82245|RK28_SPIOL5.7e-4569.6650S ribosomal protein L28, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL28 P... [more]
sp|P30956|RK28_TOBAC1.6e-4474.5950S ribosomal protein L28, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL28 P... [more]
sp|O22795|RK28_ARATH6.9e-4373.1350S ribosomal protein L28, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL2... [more]
sp|Q8DG62|RL28_THEEB2.8e-2062.6750S ribosomal protein L28 OS=Thermosynechococcus elongatus (strain BP-1) OX=1972... [more]
sp|B8HUV7|RL28_CYAP44.8e-2062.6750S ribosomal protein L28 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=39... [more]
BLAST of CsaV3_3G011880 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L501|A0A0A0L501_CUCSA6.7e-75100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134810 PE=3 SV=1[more]
tr|A0A1S3AWK5|A0A1S3AWK5_CUCME3.3e-6690.0050S ribosomal protein L28, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483567... [more]
tr|A0A061EN89|A0A061EN89_THECC2.7e-4478.05Ribosomal L28 family OS=Theobroma cacao OX=3641 GN=TCM_020946 PE=3 SV=1[more]
tr|A0A0B0P4T1|A0A0B0P4T1_GOSAR1.0e-4379.0350S ribosomal L28, chloroplastic OS=Gossypium arboreum OX=29729 GN=F383_24851 PE... [more]
tr|A0A1U8MWX0|A0A1U8MWX0_GOSHI1.0e-4379.0350S ribosomal protein L28, chloroplastic-like OS=Gossypium hirsutum OX=3635 GN=L... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR034704L28p-like
IPR026569Ribo_L28/L24
IPR001383Ribosomal_L28
IPR037147Ribo_L28/L24_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
biological_process GO:0006081 cellular aldehyde metabolic process
biological_process GO:0032787 monocarboxylic acid metabolic process
cellular_component GO:0005840 ribosome
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0016020 membrane
cellular_component GO:0009547 plastid ribosome
cellular_component GO:0044434 chloroplast part
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G011880.1CsaV3_3G011880.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR037147Ribosomal protein L28/L24 superfamilyGENE3DG3DSA:2.30.170.40coord: 74..150
e-value: 1.6E-27
score: 97.3
IPR001383Ribosomal protein L28TIGRFAMTIGR00009TIGR00009coord: 75..130
e-value: 2.1E-16
score: 58.2
IPR001383Ribosomal protein L28HAMAPMF_00373Ribosomal_L28coord: 72..148
score: 13.908
IPR026569Ribosomal protein L28/L24PFAMPF00830Ribosomal_L28coord: 75..133
e-value: 2.2E-19
score: 69.3
IPR026569Ribosomal protein L28/L24PANTHERPTHR1352839S RIBOSOMAL PROTEIN L28, MITOCHONDRIALcoord: 29..150
NoneNo IPR availablePANTHERPTHR13528:SF10SUBFAMILY NOT NAMEDcoord: 29..150
IPR034704L28p-likeSUPERFAMILYSSF143800L28p-likecoord: 75..147

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G011880CSPI03G11730Wild cucumber (PI 183967)cpicucB144
CsaV3_3G011880Cucsa.255610Cucumber (Gy14) v1cgycucB387
CsaV3_3G011880CmaCh14G018290Cucurbita maxima (Rimu)cmacucB0291
CsaV3_3G011880CmoCh14G018700Cucurbita moschata (Rifu)cmocucB0283
CsaV3_3G011880Cp4.1LG03g09810Cucurbita pepo (Zucchini)cpecucB0759
CsaV3_3G011880CsGy3G011860Cucumber (Gy14) v2cgybcucB117
CsaV3_3G011880Carg16546Silver-seed gourdcarcucB0266
CsaV3_3G011880Cla021500Watermelon (97103) v1cucwmB239
CsaV3_3G011880MELO3C006400Melon (DHL92) v3.5.1cucmeB236
CsaV3_3G011880ClCG05G004160Watermelon (Charleston Gray)cucwcgB225
CsaV3_3G011880MELO3C006400.2Melon (DHL92) v3.6.1cucmedB230
CsaV3_3G011880Cla97C05G084850Watermelon (97103) v2cucwmbB206
CsaV3_3G011880Bhi01G000502Wax gourdcucwgoB276
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G011880Wax gourdcucwgoB254
CsaV3_3G011880Wax gourdcucwgoB308
CsaV3_3G011880Cucumber (Chinese Long) v3cuccucB067
CsaV3_3G011880Cucumber (Chinese Long) v3cuccucB114
CsaV3_3G011880Cucumber (Chinese Long) v3cuccucB145
CsaV3_3G011880Silver-seed gourdcarcucB0260
CsaV3_3G011880Silver-seed gourdcarcucB0817
CsaV3_3G011880Silver-seed gourdcarcucB1003
CsaV3_3G011880Silver-seed gourdcarcucB1126
CsaV3_3G011880Cucumber (Gy14) v2cgybcucB070
CsaV3_3G011880Cucumber (Gy14) v2cgybcucB124
CsaV3_3G011880Cucumber (Gy14) v1cgycucB531
CsaV3_3G011880Cucumber (Gy14) v1cgycucB582
CsaV3_3G011880Cucurbita maxima (Rimu)cmacucB0425
CsaV3_3G011880Cucurbita maxima (Rimu)cmacucB0429
CsaV3_3G011880Cucurbita maxima (Rimu)cmacucB0709
CsaV3_3G011880Cucurbita maxima (Rimu)cmacucB0965
CsaV3_3G011880Cucurbita maxima (Rimu)cmacucB1049
CsaV3_3G011880Cucurbita moschata (Rifu)cmocucB0420
CsaV3_3G011880Cucurbita moschata (Rifu)cmocucB0424
CsaV3_3G011880Cucurbita moschata (Rifu)cmocucB0695
CsaV3_3G011880Cucurbita moschata (Rifu)cmocucB0953
CsaV3_3G011880Cucurbita moschata (Rifu)cmocucB1032
CsaV3_3G011880Cucurbita pepo (Zucchini)cpecucB0153
CsaV3_3G011880Cucurbita pepo (Zucchini)cpecucB0385
CsaV3_3G011880Cucurbita pepo (Zucchini)cpecucB0901
CsaV3_3G011880Cucurbita pepo (Zucchini)cpecucB1056
CsaV3_3G011880Wild cucumber (PI 183967)cpicucB088
CsaV3_3G011880Wild cucumber (PI 183967)cpicucB155
CsaV3_3G011880Wild cucumber (PI 183967)cpicucB341
CsaV3_3G011880Bottle gourd (USVL1VR-Ls)cuclsiB163
CsaV3_3G011880Bottle gourd (USVL1VR-Ls)cuclsiB228
CsaV3_3G011880Bottle gourd (USVL1VR-Ls)cuclsiB234
CsaV3_3G011880Melon (DHL92) v3.5.1cucmeB182
CsaV3_3G011880Melon (DHL92) v3.5.1cucmeB215
CsaV3_3G011880Melon (DHL92) v3.5.1cucmeB232
CsaV3_3G011880Melon (DHL92) v3.6.1cucmedB173
CsaV3_3G011880Melon (DHL92) v3.6.1cucmedB209
CsaV3_3G011880Melon (DHL92) v3.6.1cucmedB224
CsaV3_3G011880Watermelon (Charleston Gray)cucwcgB253
CsaV3_3G011880Watermelon (Charleston Gray)cucwcgB254
CsaV3_3G011880Watermelon (Charleston Gray)cucwcgB264
CsaV3_3G011880Watermelon (97103) v1cucwmB227
CsaV3_3G011880Watermelon (97103) v1cucwmB288
CsaV3_3G011880Watermelon (97103) v2cucwmbB233
CsaV3_3G011880Watermelon (97103) v2cucwmbB244