CmaCh14G018290 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh14G018290
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	50S ribosomal protein L28
Location	Cma_Chr14 : 13069123 .. 13070926 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCTGGATTTGCCTAAGGCTTTGAAGTTTCATTTCTGTGCTTTCTATAATTTGCTACAACATATCCTTCATGAAGAGTGCAAAAGCCCTCTCCCCCGGTATGAATAATATATAAATAATTATTATAAATAATTAATCAAGTTATAAAGCAACTTTTTTATATCATAATAACCTGAAAAATGAAGAAAATTTATAGAATATGTTAAAGATATATTAAAATTAATTATTATTTAATATCTCTTATAATTTTTTCATTCTTTCCTTGATTTTAATATTTAAAACTTAAGATTTTAGATCTATTTTTATTAAAAATGATAAAAAGAAGTGGTTTTTTTTTTTTAACTTTTATATTTTCCCCTTGAATATATATATATATATATATATATTATATATAATATTTTCAAAATTACGGAAGCATTATCCAGCCCAACACAAGAAAGCTTATCCCTTTTTCCTTCAGAAACAAAACCAGAGGCTTCTCAACTTACAGAGAACTCCGCTCAGAAACAATGGCAGTTTCCGCAGTCTTAGGCTTTACGCCGGTCAGTTCTTCCGGTGTAATGGCAGCGTCGTCATCGAAACTTCACTTCAGAACTAAACCCAATCCCGAGCTAGGGTTTCTCTCTTCTCAATTGAGCGGCATCAAAATCTCCTCCAACCACTCGCTGATCTCCCCTTCACCCATTTCTGCTCCTCTCAGACCTGCGCTTCAACCTGTTGCACGTAATCCCCTCTTCTCTACTCTTGCTTACTATGTTTTGTTTTCTGGTATATGATTGTGTTCGACCCTTTTGGGCTCTGATTGCATGCCTGGATGTTCTTTTCTCATTCTTCATCTCAACCATTTTGTATTTGAATTAGGTTTCTAAATCAGCCAGATGCCTGATTGCTTTATTAATCACTGTTTAACCGTGGCATTGGAATGTTGATTCGTAGCTGTTTCTTTGAATGGGAATTGGGAACCATCTCATACTTGCTTTGGTCATTTTCTGTTTCAGGTAGAGTTTGCCCCTTTACTGGGAAGAAAGCAAACAAGAAGAACTTGGTTTCTTTCTCGAACCACAAGACCAAGAAATTGCAGTTTGTAAATCTTCAATACAAGAAGGTTTGGTGGGAAGCCGGGAAGCGTTTTGTCAAACTACGCCTGTCAACAAAGGCTTTAAAGACCATTGAGAAGAATGGACTTGATGCTGTTGCTAAGAAAGCAGGAATTGATCTTCGTAAGGAATGATTATATAATTCATGCCTTTAATTTTACTCTTAGACTTTGAGGAAGATTTGTCGAATTGCACAATCATGTCGTATCCTGCTGGTTTTTGCCTATCCTTGTTGTTAGTAATCTGTTCATTTATGTCACATTATTCTTGTATCCTTGCTTTCCTCCATTTGGCAATGAAGCTGAAATCCATCCCTTTTCCTTTCTGGGTTTCATGAATGATACACTCTTTTAGAAGTCCAGCCACACTGATTTTCTCTATATGGACATGTCCCTCAGTTAAAGATAAGATCAATTGATAGATAGTGTAGAGAGCTGCAAAACCAGGCTCTAAGAACAGGCATCATCAAATTAGGTATCACTTTTAGGTGACTCTAAAACCTCAAATTTGATTTCTGCATCTTTCCATTGCCCTTGAGAACAGCCCACAAGGGCTGCAGTGTGCTGTAGTAGATGAAGCAAGTAATAGCCCTGTAGGTATTTTATTTTGCTGTCACAGGAGAAATATCCTTCTTTATGATATCCAAAACTAGTCTTTCAAAATTACCAACAGCACTAGCAAGCTACGAGCTGCCAAGTTTTTCA

mRNA sequence

ATGATGCTGGATTTGCCTAAGGCTTTGAAGTTTCATTTCTGTGCTTTCTATAATTTGCTACAACATATCCTTCATGAAGAGTGCAAAAGCCCTCTCCCCCGAAACAAAACCAGAGGCTTCTCAACTTACAGAGAACTCCGCTCAGAAACAATGGCAGTTTCCGCAGTCTTAGGCTTTACGCCGGTCAGTTCTTCCGGTGTAATGGCAGCGTCGTCATCGAAACTTCACTTCAGAACTAAACCCAATCCCGAGCTAGGGTTTCTCTCTTCTCAATTGAGCGGCATCAAAATCTCCTCCAACCACTCGCTGATCTCCCCTTCACCCATTTCTGCTCCTCTCAGACCTGCGCTTCAACCTGTTGCACGTAGAGTTTGCCCCTTTACTGGGAAGAAAGCAAACAAGAAGAACTTGGTTTCTTTCTCGAACCACAAGACCAAGAAATTGCAGTTTGTAAATCTTCAATACAAGAAGGTTTGGTGGGAAGCCGGGAAGCGTTTTGTCAAACTACGCCTGTCAACAAAGGCTTTAAAGACCATTGAGAAGAATGGACTTGATGCTGTTGCTAAGAAAGCAGGAATTGATCTTCGTAAGGAATGATTATATAATTCATGCCTTTAATTTTACTCTTAGACTTTGAGGAAGATTTGTCGAATTGCACAATCATGTCGTATCCTGCTGGTTTTTGCCTATCCTTGTTGTTAGTAATCTGTTCATTTATGTCACATTATTCTTGTATCCTTGCTTTCCTCCATTTGGCAATGAAGCTGAAATCCATCCCTTTTCCTTTCTGGGTTTCATGAATGATACACTCTTTTAGAAGTCCAGCCACACTGATTTTCTCTATATGGACATGTCCCTCAGTTAAAGATAAGATCAATTGATAGATAGTGTAGAGAGCTGCAAAACCAGGCTCTAAGAACAGGCATCATCAAATTAGGTATCACTTTTAGGTGACTCTAAAACCTCAAATTTGATTTCTGCATCTTTCCATTGCCCTTGAGAACAGCCCACAAGGGCTGCAGTGTGCTGTAGTAGATGAAGCAAGTAATAGCCCTGTAGGTATTTTATTTTGCTGTCACAGGAGAAATATCCTTCTTTATGATATCCAAAACTAGTCTTTCAAAATTACCAACAGCACTAGCAAGCTACGAGCTGCCAAGTTTTTCA

Coding sequence (CDS)

ATGATGCTGGATTTGCCTAAGGCTTTGAAGTTTCATTTCTGTGCTTTCTATAATTTGCTACAACATATCCTTCATGAAGAGTGCAAAAGCCCTCTCCCCCGAAACAAAACCAGAGGCTTCTCAACTTACAGAGAACTCCGCTCAGAAACAATGGCAGTTTCCGCAGTCTTAGGCTTTACGCCGGTCAGTTCTTCCGGTGTAATGGCAGCGTCGTCATCGAAACTTCACTTCAGAACTAAACCCAATCCCGAGCTAGGGTTTCTCTCTTCTCAATTGAGCGGCATCAAAATCTCCTCCAACCACTCGCTGATCTCCCCTTCACCCATTTCTGCTCCTCTCAGACCTGCGCTTCAACCTGTTGCACGTAGAGTTTGCCCCTTTACTGGGAAGAAAGCAAACAAGAAGAACTTGGTTTCTTTCTCGAACCACAAGACCAAGAAATTGCAGTTTGTAAATCTTCAATACAAGAAGGTTTGGTGGGAAGCCGGGAAGCGTTTTGTCAAACTACGCCTGTCAACAAAGGCTTTAAAGACCATTGAGAAGAATGGACTTGATGCTGTTGCTAAGAAAGCAGGAATTGATCTTCGTAAGGAATGA

Protein sequence

MMLDLPKALKFHFCAFYNLLQHILHEECKSPLPRNKTRGFSTYRELRSETMAVSAVLGFTPVSSSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

Homology

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BLAST of CmaCh14G018290 vs. Swiss-Prot
Match: RK28_TOBAC (50S ribosomal protein L28, chloroplastic OS=Nicotiana tabacum GN=RPL28 PE=1 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.9e-45
Identity = 89/121 (73.55%), Postives = 108/121 (89.26%), Query Frame = 1


Query: 78  RTKPNPELGFLSSQLSGIKISSNHSLISPSPISAPLRPALQPVARRVCPFTGKKANKKNL 137
           ++K + EL F++SQLSG+KISS H + S +P+S P +P+LQPVARR+CPFTGKK+N+ N 
Sbjct: 31  QSKLSSELSFVTSQLSGLKISSTHFISSSAPLSVPFKPSLQPVARRICPFTGKKSNRANK 90

Query: 138 VSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 197
           VS SNHKTKKLQFVNLQYK++WWEAGKR+VKLRLSTKA+KTIEKNGLDAVAKKAGIDL K
Sbjct: 91  VSHSNHKTKKLQFVNLQYKRIWWEAGKRYVKLRLSTKAIKTIEKNGLDAVAKKAGIDLSK 150

Query: 198 E 199
           +
Sbjct: 151 K 151

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BLAST of CmaCh14G018290 vs. Swiss-Prot
Match: RK28_ARATH (50S ribosomal protein L28, chloroplastic OS=Arabidopsis thaliana GN=RPL28 PE=2 SV=2)

HSP 1 Score: 173.7 bits (439), Expect = 2.0e-42
Identity = 95/132 (71.97%), Postives = 109/132 (82.58%), Query Frame = 1


Query: 68  MAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPISAPLRPALQP-VARRVCP 127
           M +S+  +   T  + ELGFL+SQLSG++IS   S +  + IS P  P +QP VARR+CP
Sbjct: 13  MTSSAKSMTKSTVTSKELGFLTSQLSGLRISYTPSDVI-NRISLPSFPGIQPIVARRICP 72

Query: 128 FTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDA 187
           FTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEAGKRFVKLRLSTKALKTIEKNGLDA
Sbjct: 73  FTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDA 132

Query: 188 VAKKAGIDLRKE 199
           VAKKAGIDLRK+
Sbjct: 133 VAKKAGIDLRKK 143

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BLAST of CmaCh14G018290 vs. Swiss-Prot
Match: RL28_THEEB (50S ribosomal protein L28 OS=Thermosynechococcus elongatus (strain BP-1) GN=rpmB PE=3 SV=2)

HSP 1 Score: 99.4 bits (246), Expect = 4.8e-20
Identity = 48/75 (64.00%), Postives = 60/75 (80.00%), Query Frame = 1


Query: 123 RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKN 182
           RVC  TGKKAN    +S S+ +TKKLQ VNLQ+K+VWW  GKR+V+LRLSTKA+KT+E+ 
Sbjct: 3   RVCQLTGKKANNAYAISHSHRRTKKLQQVNLQWKRVWWPEGKRWVRLRLSTKAIKTLERK 62

Query: 183 GLDAVAKKAGIDLRK 198
           GL A AK+AG+DL K
Sbjct: 63  GLSAFAKEAGLDLNK 77

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BLAST of CmaCh14G018290 vs. Swiss-Prot
Match: RL28_CYAP4 (50S ribosomal protein L28 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rpmB PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 8.1e-20
Identity = 48/75 (64.00%), Postives = 60/75 (80.00%), Query Frame = 1


Query: 123 RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKN 182
           RVC  TGK+AN    VS S+ +TKKLQ VNLQ+K++WW  GKR+V+LRLSTKALKT+E  
Sbjct: 3   RVCQLTGKRANNAYAVSHSHRRTKKLQEVNLQWKRIWWPQGKRWVRLRLSTKALKTLEHK 62

Query: 183 GLDAVAKKAGIDLRK 198
           GLD+ A++AGIDL K
Sbjct: 63  GLDSFAREAGIDLNK 77

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BLAST of CmaCh14G018290 vs. Swiss-Prot
Match: RL28_SYNP2 (50S ribosomal protein L28 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rpmB PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 8.1e-20
Identity = 48/75 (64.00%), Postives = 60/75 (80.00%), Query Frame = 1


Query: 123 RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKN 182
           R C  TGKKAN    VS S+ +TKKLQ VNLQ+K+VWW  G RFV+LRLSTKA+KT+EK 
Sbjct: 3   RKCQITGKKANNAMAVSHSHRRTKKLQEVNLQWKRVWWPEGNRFVRLRLSTKAIKTLEKK 62

Query: 183 GLDAVAKKAGIDLRK 198
           G+DA+A++AGI+L K
Sbjct: 63  GIDAMAREAGINLNK 77

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BLAST of CmaCh14G018290 vs. TrEMBL
Match: A0A0A0L501_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134810 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 4.2e-63
Identity = 131/150 (87.33%), Postives = 140/150 (93.33%), Query Frame = 1


Query: 51  MAVSAVLGFTPVSS-SGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPI 110
           MA S V GFTP ++ SGVM  SS+KLHFRTKPN +LGFL+SQLSGI+ISSNHSLISP+ I
Sbjct: 1   MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASI 60

Query: 111 S-APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 170
           S APLRP+LQPVARR+CPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  STAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 171 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 199
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150

[Close]

BLAST of CmaCh14G018290 vs. TrEMBL
Match: A0A061EN89_THECC (Ribosomal L28 family OS=Theobroma cacao GN=TCM_020946 PE=3 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.8e-45
Identity = 105/136 (77.21%), Postives = 116/136 (85.29%), Query Frame = 1


Query: 71  SSSKLHF------RTKPNPEL-GFLSSQLSGIKISSNHSLISP-SPISAPLRPALQPVAR 130
           SSS L F      +T+P+ +L GF++SQLSG+KIS N   ++P  PISAP  PAL+PVAR
Sbjct: 9   SSSVLRFQKPEPPKTRPSSQLLGFVTSQLSGVKISYNIPDLAPIKPISAPFTPALRPVAR 68

Query: 131 RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKN 190
           RVCPFTGKKANK N VSFSNHKTKKLQFVNLQYKKVWWEAGKR+VKLRLSTKALKTIEKN
Sbjct: 69  RVCPFTGKKANKANKVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 128

Query: 191 GLDAVAKKAGIDLRKE 199
           GLDAVAKKAGIDLRKE
Sbjct: 129 GLDAVAKKAGIDLRKE 144

[Close]

BLAST of CmaCh14G018290 vs. TrEMBL
Match: A0A0B0P4T1_GOSAR (50S ribosomal L28, chloroplastic OS=Gossypium arboreum GN=F383_24851 PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 3.0e-45
Identity = 105/137 (76.64%), Postives = 115/137 (83.94%), Query Frame = 1


Query: 71  SSSKLHF-RTKP------NPELGFLSSQLSGIKISSNHSLISP--SPISAPLRPALQPVA 130
           SSS L F +T+P      +P LGF++SQLSGIKIS N  ++     PIS+P  PALQPVA
Sbjct: 9   SSSVLRFNKTEPLKTNPSSPFLGFVTSQLSGIKISCNLPVVVAPLKPISSPFTPALQPVA 68

Query: 131 RRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEK 190
           RR+CPFTGKKANK N VSFSNHKTKKLQFVNLQYKKVWWEAGKR+VKLRLSTKALKTIEK
Sbjct: 69  RRICPFTGKKANKANKVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEK 128

Query: 191 NGLDAVAKKAGIDLRKE 199
           NGLDAVAKKAGIDLRKE
Sbjct: 129 NGLDAVAKKAGIDLRKE 145

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BLAST of CmaCh14G018290 vs. TrEMBL
Match: A0A0D2SB02_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G052000 PE=3 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 1.9e-44
Identity = 104/137 (75.91%), Postives = 114/137 (83.21%), Query Frame = 1


Query: 71  SSSKLHF-RTKP------NPELGFLSSQLSGIKISSNHSLISP--SPISAPLRPALQPVA 130
           SSS L F +T+P      +P LGF++SQLSGIKIS N  ++     PIS+P  PAL PVA
Sbjct: 9   SSSVLRFNKTEPLKTNPSSPFLGFVTSQLSGIKISCNLPVVVAPLKPISSPFTPALLPVA 68

Query: 131 RRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEK 190
           RR+CPFTGKKANK N VSFSNHKTKKLQFVNLQYKKVWWEAGKR+VKLRLSTKALKTIEK
Sbjct: 69  RRICPFTGKKANKANKVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEK 128

Query: 191 NGLDAVAKKAGIDLRKE 199
           NGLDAVAKKAGIDLRKE
Sbjct: 129 NGLDAVAKKAGIDLRKE 145

[Close]

BLAST of CmaCh14G018290 vs. TrEMBL
Match: A0A0K9RD02_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_085320 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 7.4e-44
Identity = 103/148 (69.59%), Postives = 120/148 (81.08%), Query Frame = 1


Query: 62  VSSSGVMAASSSKLHFRT-------KPNP---ELGFLSSQLSGIKISSNHSL-ISPSPIS 121
           +++SG++ ++ S + FR        KP     ELGFL+SQLSGI+IS +    I   PIS
Sbjct: 1   MAASGMLISNPSNVCFRKPQFSCSLKPKATVSELGFLTSQLSGIQISPSPLFPIISKPIS 60

Query: 122 APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 181
           APL+P+LQPVARR+CPFTGKK+NK N VS SNHKTK+LQFVNLQYK+VWWEAGKRFVKLR
Sbjct: 61  APLKPSLQPVARRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLR 120

Query: 182 LSTKALKTIEKNGLDAVAKKAGIDLRKE 199
           LSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 148

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BLAST of CmaCh14G018290 vs. TAIR10
Match: AT2G33450.1 (AT2G33450.1 Ribosomal L28 family)

HSP 1 Score: 173.7 bits (439), Expect = 1.1e-43
Identity = 95/132 (71.97%), Postives = 109/132 (82.58%), Query Frame = 1


Query: 68  MAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPISAPLRPALQP-VARRVCP 127
           M +S+  +   T  + ELGFL+SQLSG++IS   S +  + IS P  P +QP VARR+CP
Sbjct: 13  MTSSAKSMTKSTVTSKELGFLTSQLSGLRISYTPSDVI-NRISLPSFPGIQPIVARRICP 72

Query: 128 FTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDA 187
           FTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEAGKRFVKLRLSTKALKTIEKNGLDA
Sbjct: 73  FTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDA 132

Query: 188 VAKKAGIDLRKE 199
           VAKKAGIDLRK+
Sbjct: 133 VAKKAGIDLRKK 143

[Close]

BLAST of CmaCh14G018290 vs. NCBI nr
Match: gi|659076069|ref|XP_008438484.1| (PREDICTED: 50S ribosomal protein L28, chloroplastic [Cucumis melo])

HSP 1 Score: 255.8 bits (652), Expect = 6.4e-65
Identity = 134/150 (89.33%), Postives = 142/150 (94.67%), Query Frame = 1


Query: 51  MAVSAVLGFTPVSSS-GVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPI 110
           MA S V GFTP ++S GVMA SS+KLHFRTKPN +LGFL+SQLSGIKISSNHSLISPSPI
Sbjct: 1   MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI 60

Query: 111 S-APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 170
           S APLRP+LQP+ARR+CPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  SPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 171 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 199
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150

[Close]

BLAST of CmaCh14G018290 vs. NCBI nr
Match: gi|449432524|ref|XP_004134049.1| (PREDICTED: 50S ribosomal protein L28, chloroplastic [Cucumis sativus])

HSP 1 Score: 249.2 bits (635), Expect = 6.0e-63
Identity = 131/150 (87.33%), Postives = 140/150 (93.33%), Query Frame = 1


Query: 51  MAVSAVLGFTPVSS-SGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPI 110
           MA S V GFTP ++ SGVM  SS+KLHFRTKPN +LGFL+SQLSGI+ISSNHSLISP+ I
Sbjct: 1   MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASI 60

Query: 111 S-APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 170
           S APLRP+LQPVARR+CPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  STAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 171 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 199
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150

[Close]

BLAST of CmaCh14G018290 vs. NCBI nr
Match: gi|1009116930|ref|XP_015875042.1| (PREDICTED: 50S ribosomal protein L28, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 192.6 bits (488), Expect = 6.6e-46
Identity = 107/149 (71.81%), Postives = 118/149 (79.19%), Query Frame = 1


Query: 51  MAVSAVLG-FTPVSSSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPI 110
           MA SA LG F   +SS   + S +KL  +     ELGF++SQLSG+KISS+ S     PI
Sbjct: 1   MAASATLGVFLGNTSSFRKSESCNKLCLKRNAVAELGFVTSQLSGLKISSDFSYEPARPI 60

Query: 111 SAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKL 170
               +PA QPVARR+CPFTGKKANK N VSFSNHKTKKLQFVNLQYKKVWWEAGKR+VKL
Sbjct: 61  VTSFKPAFQPVARRICPFTGKKANKANKVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKL 120

Query: 171 RLSTKALKTIEKNGLDAVAKKAGIDLRKE 199
           RLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 RLSTKALKTIEKNGLDAVAKKAGIDLRKE 149

[Close]

BLAST of CmaCh14G018290 vs. NCBI nr
Match: gi|590659707|ref|XP_007035202.1| (Ribosomal L28 family [Theobroma cacao])

HSP 1 Score: 190.7 bits (483), Expect = 2.5e-45
Identity = 105/136 (77.21%), Postives = 116/136 (85.29%), Query Frame = 1


Query: 71  SSSKLHF------RTKPNPEL-GFLSSQLSGIKISSNHSLISP-SPISAPLRPALQPVAR 130
           SSS L F      +T+P+ +L GF++SQLSG+KIS N   ++P  PISAP  PAL+PVAR
Sbjct: 9   SSSVLRFQKPEPPKTRPSSQLLGFVTSQLSGVKISYNIPDLAPIKPISAPFTPALRPVAR 68

Query: 131 RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKN 190
           RVCPFTGKKANK N VSFSNHKTKKLQFVNLQYKKVWWEAGKR+VKLRLSTKALKTIEKN
Sbjct: 69  RVCPFTGKKANKANKVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 128

Query: 191 GLDAVAKKAGIDLRKE 199
           GLDAVAKKAGIDLRKE
Sbjct: 129 GLDAVAKKAGIDLRKE 144

[Close]

BLAST of CmaCh14G018290 vs. NCBI nr
Match: gi|728840449|gb|KHG19892.1| (50S ribosomal L28, chloroplastic [Gossypium arboreum])

HSP 1 Score: 189.9 bits (481), Expect = 4.3e-45
Identity = 105/137 (76.64%), Postives = 115/137 (83.94%), Query Frame = 1


Query: 71  SSSKLHF-RTKP------NPELGFLSSQLSGIKISSNHSLISP--SPISAPLRPALQPVA 130
           SSS L F +T+P      +P LGF++SQLSGIKIS N  ++     PIS+P  PALQPVA
Sbjct: 9   SSSVLRFNKTEPLKTNPSSPFLGFVTSQLSGIKISCNLPVVVAPLKPISSPFTPALQPVA 68

Query: 131 RRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEK 190
           RR+CPFTGKKANK N VSFSNHKTKKLQFVNLQYKKVWWEAGKR+VKLRLSTKALKTIEK
Sbjct: 69  RRICPFTGKKANKANKVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEK 128

Query: 191 NGLDAVAKKAGIDLRKE 199
           NGLDAVAKKAGIDLRKE
Sbjct: 129 NGLDAVAKKAGIDLRKE 145

The following BLAST results are available for this feature:

BLAST of CmaCh14G018290 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK28_TOBAC	1.9e-45	73.55	50S ribosomal protein L28, chloroplastic OS=Nicotiana tabacum GN=RPL28 PE=1 SV=1	[more]
RK28_ARATH	2.0e-42	71.97	50S ribosomal protein L28, chloroplastic OS=Arabidopsis thaliana GN=RPL28 PE=2 S...	[more]
RL28_THEEB	4.8e-20	64.00	50S ribosomal protein L28 OS=Thermosynechococcus elongatus (strain BP-1) GN=rpmB...	[more]
RL28_CYAP4	8.1e-20	64.00	50S ribosomal protein L28 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rp...	[more]
RL28_SYNP2	8.1e-20	64.00	50S ribosomal protein L28 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / P...	[more]

BLAST of CmaCh14G018290 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L501_CUCSA	4.2e-63	87.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134810 PE=3 SV=1	[more]
A0A061EN89_THECC	1.8e-45	77.21	Ribosomal L28 family OS=Theobroma cacao GN=TCM_020946 PE=3 SV=1	[more]
A0A0B0P4T1_GOSAR	3.0e-45	76.64	50S ribosomal L28, chloroplastic OS=Gossypium arboreum GN=F383_24851 PE=3 SV=1	[more]
A0A0D2SB02_GOSRA	1.9e-44	75.91	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G052000 PE=3 SV=1	[more]
A0A0K9RD02_SPIOL	7.4e-44	69.59	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_085320 PE=3 SV=1	[more]

BLAST of CmaCh14G018290 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G33450.1	1.1e-43	71.97	Ribosomal L28 family	[more]

BLAST of CmaCh14G018290 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659076069\|ref\|XP_008438484.1\|	6.4e-65	89.33	PREDICTED: 50S ribosomal protein L28, chloroplastic [Cucumis melo]	[more]
gi\|449432524\|ref\|XP_004134049.1\|	6.0e-63	87.33	PREDICTED: 50S ribosomal protein L28, chloroplastic [Cucumis sativus]	[more]
gi\|1009116930\|ref\|XP_015875042.1\|	6.6e-46	71.81	PREDICTED: 50S ribosomal protein L28, chloroplastic [Ziziphus jujuba]	[more]
gi\|590659707\|ref\|XP_007035202.1\|	2.5e-45	77.21	Ribosomal L28 family [Theobroma cacao]	[more]
gi\|728840449\|gb\|KHG19892.1\|	4.3e-45	76.64	50S ribosomal L28, chloroplastic [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001383	Ribosomal_L28
IPR026569	Ribo_L28/L24

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0019243	methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0006081	cellular aldehyde metabolic process
biological_process	GO:0032787	monocarboxylic acid metabolic process
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0016020	membrane
cellular_component	GO:0009547	plastid ribosome
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G018290.1	CmaCh14G018290.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001383	Ribosomal protein L28	HAMAP	MF_00373	Ribosomal_L28	coord: 120..196 score: 13
IPR001383	Ribosomal protein L28	TIGRFAMs	TIGR00009	TIGR00009	coord: 123..178 score: 4.6
IPR026569	Ribosomal protein L28/L24	PANTHER	PTHR13528	39S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL	coord: 34..198 score: 3.0
IPR026569	Ribosomal protein L28/L24	PFAM	PF00830	Ribosomal_L28	coord: 123..181 score: 1.9
None	No IPR available	GENE3D	G3DSA:2.30.170.40		coord: 123..196 score: 1.4
None	No IPR available	PANTHER	PTHR13528:SF3	SUBFAMILY NOT NAMED	coord: 34..198 score: 3.0
None	No IPR available	unknown	SSF143800	L28p-like	coord: 123..195 score: 1.14

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh14G018290	Cucsa.255610	Cucumber (Gy14) v1	cgycmaB0709
CmaCh14G018290	Cla021500	Watermelon (97103) v1	cmawmB242
CmaCh14G018290	Csa3G134810	Cucumber (Chinese Long) v2	cmacuB253
CmaCh14G018290	MELO3C006400	Melon (DHL92) v3.5.1	cmameB242
CmaCh14G018290	ClCG05G004160	Watermelon (Charleston Gray)	cmawcgB233
CmaCh14G018290	CSPI03G11730	Wild cucumber (PI 183967)	cmacpiB255
CmaCh14G018290	CmoCh14G018700	Cucurbita moschata (Rifu)	cmacmoB245
CmaCh14G018290	Lsi05G017520	Bottle gourd (USVL1VR-Ls)	cmalsiB245
CmaCh14G018290	Cp4.1LG03g09810	Cucurbita pepo (Zucchini)	cmacpeB283
CmaCh14G018290	MELO3C006400.2	Melon (DHL92) v3.6.1	cmamedB273
CmaCh14G018290	CsaV3_3G011880	Cucumber (Chinese Long) v3	cmacucB0291
CmaCh14G018290	Cla97C05G084850	Watermelon (97103) v2	cmawmbB263
CmaCh14G018290	Bhi01G000502	Wax gourd	cmawgoB0334
CmaCh14G018290	CsGy3G011860	Cucumber (Gy14) v2	cgybcmaB318
CmaCh14G018290	Carg16546	Silver-seed gourd	carcmaB0325

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh14G018290	Watermelon (Charleston Gray)	cmawcgB235
CmaCh14G018290	Watermelon (Charleston Gray)	cmawcgB240
CmaCh14G018290	Watermelon (97103) v1	cmawmB236
CmaCh14G018290	Watermelon (97103) v1	cmawmB250
CmaCh14G018290	Cucurbita pepo (Zucchini)	cmacpeB259
CmaCh14G018290	Cucurbita pepo (Zucchini)	cmacpeB266
CmaCh14G018290	Cucurbita pepo (Zucchini)	cmacpeB290
CmaCh14G018290	Cucurbita pepo (Zucchini)	cmacpeB292
CmaCh14G018290	Bottle gourd (USVL1VR-Ls)	cmalsiB225
CmaCh14G018290	Bottle gourd (USVL1VR-Ls)	cmalsiB247
CmaCh14G018290	Cucumber (Gy14) v2	cgybcmaB188
CmaCh14G018290	Cucumber (Gy14) v2	cgybcmaB314
CmaCh14G018290	Melon (DHL92) v3.6.1	cmamedB265
CmaCh14G018290	Melon (DHL92) v3.6.1	cmamedB266
CmaCh14G018290	Silver-seed gourd	carcmaB0313
CmaCh14G018290	Silver-seed gourd	carcmaB1075
CmaCh14G018290	Silver-seed gourd	carcmaB1320
CmaCh14G018290	Silver-seed gourd	carcmaB1485
CmaCh14G018290	Cucumber (Chinese Long) v3	cmacucB0277
CmaCh14G018290	Cucumber (Chinese Long) v3	cmacucB0287
CmaCh14G018290	Watermelon (97103) v2	cmawmbB266
CmaCh14G018290	Watermelon (97103) v2	cmawmbB273
CmaCh14G018290	Wax gourd	cmawgoB0311
CmaCh14G018290	Wax gourd	cmawgoB0344
CmaCh14G018290	Cucurbita maxima (Rimu)	cmacmaB249
CmaCh14G018290	Cucurbita maxima (Rimu)	cmacmaB259
CmaCh14G018290	Cucurbita maxima (Rimu)	cmacmaB265
CmaCh14G018290	Cucurbita maxima (Rimu)	cmacmaB284
CmaCh14G018290	Cucurbita maxima (Rimu)	cmacmaB296
CmaCh14G018290	Cucumber (Gy14) v1	cgycmaB1054
CmaCh14G018290	Cucurbita moschata (Rifu)	cmacmoB251
CmaCh14G018290	Cucurbita moschata (Rifu)	cmacmoB261
CmaCh14G018290	Cucurbita moschata (Rifu)	cmacmoB271
CmaCh14G018290	Cucurbita moschata (Rifu)	cmacmoB279
CmaCh14G018290	Wild cucumber (PI 183967)	cmacpiB240
CmaCh14G018290	Wild cucumber (PI 183967)	cmacpiB254
CmaCh14G018290	Cucumber (Chinese Long) v2	cmacuB238
CmaCh14G018290	Melon (DHL92) v3.5.1	cmameB233
CmaCh14G018290	Melon (DHL92) v3.5.1	cmameB234