CmoCh14G018700 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G018700
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	50S ribosomal protein L28
Location	Cmo_Chr14 : 14056535 .. 14057777 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGCCCAACACCAGAAAGCTTATCCCTTTCTCCTTCAGAAACAAAAACCAGAGGCTTCTCAACTTACAGAGATAACGATAACAGAGAACTCCGCTCAGAAACAATGGCAGTTTCCGCAGTCTTAGGCTTTACGCCGGTCTGTTCTTCCGGTGTAATGGCGGCGTCGTCATCGAAACTTCACTTCAGAAGTAAAGCCAATCCCGAGCTAGGGTTTCTCTCTTCTCAATTGAGCGGCATCAAAATCTCCTCCAACCACTCGCTGATCTCCGCTTCACCCATTTCTGCTCCTCTCAGACCTGCGCTTCAACCTGTTGCTCGTAATCCCTTCTTCCTTACTATGCTTTGTTTTCTGGTATATGATTGTGTTCGACCCTTTTGCGCTCTGATTTCATGCCTGGATGTTCTTTTCTCATTCTTCATCTCAACCATTTTGTATTTGAATTAGGTTTCTAAATCAGCCAGATGCCTGATTGCTTTCTTAATCACTGTTTAACCAGTTGCGTTGGAATGTTGATTCGTAGCTGTTTTTTTGAGTGCGAATTGGGAATCATCTCAAACTTCGTTCGGTCATTTTCTGTTTCAGGTAGAGTTTGCCCCTTTACTGGGAAGAAAGCAAACAAGAAGAACTTGGTTTCTTTCTCCAACCACAAGACCAAGAAATTGCAGTTTGTAAATCTTCAATACAAGAAGGTTTGGTGGGAAGCCGGGAAGCGTTTTGTCAAACTACGCTTGTCAACAAAGGCTTTGAAGACCATTGAGAAGAATGGACTCGATGCTGTTGCTAAGAAAGCAGGAATTGATCTTCGTAAGGAATGATTACATAATTCATGCCTTTAATTTTACTCTTAGACTTCGAGGAAGATTTGTCTAATTGCACAACCATGTCGTATCCTGCTGGTTTTTGCCTATTCTTGTTGTTAGTAATCTGTTCATTTATGTCAAATTATTCTTGTATCTTTGCTTTCCTCCATTTGGCAATGAAGCTGAAATCCATCCCTTTTCCTTTCTGGGTTTCATGAATGATACACTTTTTTAGAAGTCCAGCCACACTGATTTTCTCTATGTGGACATGTCCCTCAGTTAAAGATTAGATCAAGAGAGTAGAGATTTGTTGATAGATAGTGTAGAGAGCTGCAAAGCCAGGCTCTAAGAACAGGCTATCATCAAATTAGGCATCACTTTTAGGTGACTCTAAAACCTCAAATTTGATCTCTGCATCTTTCCATTGCCCTTGAGAACAGCC

mRNA sequence

CAGCCCAACACCAGAAAGCTTATCCCTTTCTCCTTCAGAAACAAAAACCAGAGGCTTCTCAACTTACAGAGATAACGATAACAGAGAACTCCGCTCAGAAACAATGGCAGTTTCCGCAGTCTTAGGCTTTACGCCGGTCTGTTCTTCCGGTGTAATGGCGGCGTCGTCATCGAAACTTCACTTCAGAAGTAAAGCCAATCCCGAGCTAGGGTTTCTCTCTTCTCAATTGAGCGGCATCAAAATCTCCTCCAACCACTCGCTGATCTCCGCTTCACCCATTTCTGCTCCTCTCAGACCTGCGCTTCAACCTGTTGCTCGTAGAGTTTGCCCCTTTACTGGGAAGAAAGCAAACAAGAAGAACTTGGTTTCTTTCTCCAACCACAAGACCAAGAAATTGCAGTTTGTAAATCTTCAATACAAGAAGGTTTGGTGGGAAGCCGGGAAGCGTTTTGTCAAACTACGCTTGTCAACAAAGGCTTTGAAGACCATTGAGAAGAATGGACTCGATGCTGTTGCTAAGAAAGCAGGAATTGATCTTCGTAAGGAATGATTACATAATTCATGCCTTTAATTTTACTCTTAGACTTCGAGGAAGATTTGTCTAATTGCACAACCATGTCGTATCCTGCTGGTTTTTGCCTATTCTTGTTGTTAGTAATCTGTTCATTTATGTCAAATTATTCTTGTATCTTTGCTTTCCTCCATTTGGCAATGAAGCTGAAATCCATCCCTTTTCCTTTCTGGGTTTCATGAATGATACACTTTTTTAGAAGTCCAGCCACACTGATTTTCTCTATGTGGACATGTCCCTCAGTTAAAGATTAGATCAAGAGAGTAGAGATTTGTTGATAGATAGTGTAGAGAGCTGCAAAGCCAGGCTCTAAGAACAGGCTATCATCAAATTAGGCATCACTTTTAGGTGACTCTAAAACCTCAAATTTGATCTCTGCATCTTTCCATTGCCCTTGAGAACAGCC

Coding sequence (CDS)

ATGGCAGTTTCCGCAGTCTTAGGCTTTACGCCGGTCTGTTCTTCCGGTGTAATGGCGGCGTCGTCATCGAAACTTCACTTCAGAAGTAAAGCCAATCCCGAGCTAGGGTTTCTCTCTTCTCAATTGAGCGGCATCAAAATCTCCTCCAACCACTCGCTGATCTCCGCTTCACCCATTTCTGCTCCTCTCAGACCTGCGCTTCAACCTGTTGCTCGTAGAGTTTGCCCCTTTACTGGGAAGAAAGCAAACAAGAAGAACTTGGTTTCTTTCTCCAACCACAAGACCAAGAAATTGCAGTTTGTAAATCTTCAATACAAGAAGGTTTGGTGGGAAGCCGGGAAGCGTTTTGTCAAACTACGCTTGTCAACAAAGGCTTTGAAGACCATTGAGAAGAATGGACTCGATGCTGTTGCTAAGAAAGCAGGAATTGATCTTCGTAAGGAATGA

Homology

[Close]

BLAST of CmoCh14G018700 vs. Swiss-Prot
Match: RK28_TOBAC (50S ribosomal protein L28, chloroplastic OS=Nicotiana tabacum GN=RPL28 PE=1 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 2.9e-46
Identity = 90/121 (74.38%), Postives = 109/121 (90.08%), Query Frame = 1


Query: 28  RSKANPELGFLSSQLSGIKISSNHSLISASPISAPLRPALQPVARRVCPFTGKKANKKNL 87
           +SK + EL F++SQLSG+KISS H + S++P+S P +P+LQPVARR+CPFTGKK+N+ N 
Sbjct: 31  QSKLSSELSFVTSQLSGLKISSTHFISSSAPLSVPFKPSLQPVARRICPFTGKKSNRANK 90

Query: 88  VSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 147
           VS SNHKTKKLQFVNLQYK++WWEAGKR+VKLRLSTKA+KTIEKNGLDAVAKKAGIDL K
Sbjct: 91  VSHSNHKTKKLQFVNLQYKRIWWEAGKRYVKLRLSTKAIKTIEKNGLDAVAKKAGIDLSK 150

Query: 148 E 149
           +
Sbjct: 151 K 151

[Close]

BLAST of CmoCh14G018700 vs. Swiss-Prot
Match: RK28_ARATH (50S ribosomal protein L28, chloroplastic OS=Arabidopsis thaliana GN=RPL28 PE=2 SV=2)

HSP 1 Score: 172.2 bits (435), Expect = 4.3e-42
Identity = 94/132 (71.21%), Postives = 109/132 (82.58%), Query Frame = 1


Query: 18  MAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPISAPLRPALQP-VARRVCP 77
           M +S+  +   +  + ELGFL+SQLSG++IS   S +  + IS P  P +QP VARR+CP
Sbjct: 13  MTSSAKSMTKSTVTSKELGFLTSQLSGLRISYTPSDV-INRISLPSFPGIQPIVARRICP 72

Query: 78  FTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDA 137
           FTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEAGKRFVKLRLSTKALKTIEKNGLDA
Sbjct: 73  FTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDA 132

Query: 138 VAKKAGIDLRKE 149
           VAKKAGIDLRK+
Sbjct: 133 VAKKAGIDLRKK 143

[Close]

BLAST of CmoCh14G018700 vs. Swiss-Prot
Match: RL28_THEEB (50S ribosomal protein L28 OS=Thermosynechococcus elongatus (strain BP-1) GN=rpmB PE=3 SV=2)

HSP 1 Score: 99.4 bits (246), Expect = 3.6e-20
Identity = 48/75 (64.00%), Postives = 60/75 (80.00%), Query Frame = 1


Query: 73  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKN 132
           RVC  TGKKAN    +S S+ +TKKLQ VNLQ+K+VWW  GKR+V+LRLSTKA+KT+E+ 
Sbjct: 3   RVCQLTGKKANNAYAISHSHRRTKKLQQVNLQWKRVWWPEGKRWVRLRLSTKAIKTLERK 62

Query: 133 GLDAVAKKAGIDLRK 148
           GL A AK+AG+DL K
Sbjct: 63  GLSAFAKEAGLDLNK 77

[Close]

BLAST of CmoCh14G018700 vs. Swiss-Prot
Match: RL28_CYAP4 (50S ribosomal protein L28 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rpmB PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 6.1e-20
Identity = 48/75 (64.00%), Postives = 60/75 (80.00%), Query Frame = 1


Query: 73  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKN 132
           RVC  TGK+AN    VS S+ +TKKLQ VNLQ+K++WW  GKR+V+LRLSTKALKT+E  
Sbjct: 3   RVCQLTGKRANNAYAVSHSHRRTKKLQEVNLQWKRIWWPQGKRWVRLRLSTKALKTLEHK 62

Query: 133 GLDAVAKKAGIDLRK 148
           GLD+ A++AGIDL K
Sbjct: 63  GLDSFAREAGIDLNK 77

[Close]

BLAST of CmoCh14G018700 vs. Swiss-Prot
Match: RL28_SYNP2 (50S ribosomal protein L28 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rpmB PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 6.1e-20
Identity = 48/75 (64.00%), Postives = 60/75 (80.00%), Query Frame = 1


Query: 73  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKN 132
           R C  TGKKAN    VS S+ +TKKLQ VNLQ+K+VWW  G RFV+LRLSTKA+KT+EK 
Sbjct: 3   RKCQITGKKANNAMAVSHSHRRTKKLQEVNLQWKRVWWPEGNRFVRLRLSTKAIKTLEKK 62

Query: 133 GLDAVAKKAGIDLRK 148
           G+DA+A++AGI+L K
Sbjct: 63  GIDAMAREAGINLNK 77

[Close]

BLAST of CmoCh14G018700 vs. TrEMBL
Match: A0A0A0L501_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134810 PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.5e-60
Identity = 128/150 (85.33%), Postives = 137/150 (91.33%), Query Frame = 1


Query: 1   MAVSAVLGFTPVCS-SGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPI 60
           MA S V GFTP  + SGVM  SS+KLHFR+K N +LGFL+SQLSGI+ISSNHSLIS + I
Sbjct: 1   MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASI 60

Query: 61  S-APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           S APLRP+LQPVARR+CPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  STAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150

[Close]

BLAST of CmoCh14G018700 vs. TrEMBL
Match: A0A0B0P4T1_GOSAR (50S ribosomal L28, chloroplastic OS=Gossypium arboreum GN=F383_24851 PE=3 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 3.8e-45
Identity = 106/150 (70.67%), Postives = 121/150 (80.67%), Query Frame = 1


Query: 1   MAVSAVLGFTPVCSSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISA--SP 60
           MA  A +G     SS V+  + ++    + ++P LGF++SQLSGIKIS N  ++ A   P
Sbjct: 1   MATLATVG-----SSSVLRFNKTEPLKTNPSSPFLGFVTSQLSGIKISCNLPVVVAPLKP 60

Query: 61  ISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           IS+P  PALQPVARR+CPFTGKKANK N VSFSNHKTKKLQFVNLQYKKVWWEAGKR+VK
Sbjct: 61  ISSPFTPALQPVARRICPFTGKKANKANKVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 145

[Close]

BLAST of CmoCh14G018700 vs. TrEMBL
Match: A0A061EN89_THECC (Ribosomal L28 family OS=Theobroma cacao GN=TCM_020946 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 8.5e-45
Identity = 104/136 (76.47%), Postives = 111/136 (81.62%), Query Frame = 1


Query: 21  SSSKLHFRSKANPE-------LGFLSSQLSGIKISSN-HSLISASPISAPLRPALQPVAR 80
           SSS L F+    P+       LGF++SQLSG+KIS N   L    PISAP  PAL+PVAR
Sbjct: 9   SSSVLRFQKPEPPKTRPSSQLLGFVTSQLSGVKISYNIPDLAPIKPISAPFTPALRPVAR 68

Query: 81  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKN 140
           RVCPFTGKKANK N VSFSNHKTKKLQFVNLQYKKVWWEAGKR+VKLRLSTKALKTIEKN
Sbjct: 69  RVCPFTGKKANKANKVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 128

Query: 141 GLDAVAKKAGIDLRKE 149
           GLDAVAKKAGIDLRKE
Sbjct: 129 GLDAVAKKAGIDLRKE 144

[Close]

BLAST of CmoCh14G018700 vs. TrEMBL
Match: A0A0D2SB02_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G052000 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.5e-44
Identity = 105/150 (70.00%), Postives = 120/150 (80.00%), Query Frame = 1


Query: 1   MAVSAVLGFTPVCSSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISA--SP 60
           MA  A +G     SS V+  + ++    + ++P LGF++SQLSGIKIS N  ++ A   P
Sbjct: 1   MATLATVG-----SSSVLRFNKTEPLKTNPSSPFLGFVTSQLSGIKISCNLPVVVAPLKP 60

Query: 61  ISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           IS+P  PAL PVARR+CPFTGKKANK N VSFSNHKTKKLQFVNLQYKKVWWEAGKR+VK
Sbjct: 61  ISSPFTPALLPVARRICPFTGKKANKANKVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 145

[Close]

BLAST of CmoCh14G018700 vs. TrEMBL
Match: A0A0K9RD02_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_085320 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.6e-43
Identity = 103/148 (69.59%), Postives = 120/148 (81.08%), Query Frame = 1


Query: 12  VCSSGVMAASSSKLHFRS---------KAN-PELGFLSSQLSGIKISSNHSL-ISASPIS 71
           + +SG++ ++ S + FR          KA   ELGFL+SQLSGI+IS +    I + PIS
Sbjct: 1   MAASGMLISNPSNVCFRKPQFSCSLKPKATVSELGFLTSQLSGIQISPSPLFPIISKPIS 60

Query: 72  APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 131
           APL+P+LQPVARR+CPFTGKK+NK N VS SNHKTK+LQFVNLQYK+VWWEAGKRFVKLR
Sbjct: 61  APLKPSLQPVARRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLR 120

Query: 132 LSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           LSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]

BLAST of CmoCh14G018700 vs. TAIR10
Match: AT2G33450.1 (AT2G33450.1 Ribosomal L28 family)

HSP 1 Score: 172.2 bits (435), Expect = 2.4e-43
Identity = 94/132 (71.21%), Postives = 109/132 (82.58%), Query Frame = 1


Query: 18  MAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPISAPLRPALQP-VARRVCP 77
           M +S+  +   +  + ELGFL+SQLSG++IS   S +  + IS P  P +QP VARR+CP
Sbjct: 13  MTSSAKSMTKSTVTSKELGFLTSQLSGLRISYTPSDV-INRISLPSFPGIQPIVARRICP 72

Query: 78  FTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDA 137
           FTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEAGKRFVKLRLSTKALKTIEKNGLDA
Sbjct: 73  FTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDA 132

Query: 138 VAKKAGIDLRKE 149
           VAKKAGIDLRK+
Sbjct: 133 VAKKAGIDLRKK 143

[Close]

BLAST of CmoCh14G018700 vs. NCBI nr
Match: gi|659076069|ref|XP_008438484.1| (PREDICTED: 50S ribosomal protein L28, chloroplastic [Cucumis melo])

HSP 1 Score: 246.1 bits (627), Expect = 3.8e-62
Identity = 131/150 (87.33%), Postives = 139/150 (92.67%), Query Frame = 1


Query: 1   MAVSAVLGFTPVCSS-GVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPI 60
           MA S V GFTP  +S GVMA SS+KLHFR+K N +LGFL+SQLSGIKISSNHSLIS SPI
Sbjct: 1   MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI 60

Query: 61  S-APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           S APLRP+LQP+ARR+CPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  SPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150

[Close]

BLAST of CmoCh14G018700 vs. NCBI nr
Match: gi|449432524|ref|XP_004134049.1| (PREDICTED: 50S ribosomal protein L28, chloroplastic [Cucumis sativus])

HSP 1 Score: 239.6 bits (610), Expect = 3.5e-60
Identity = 128/150 (85.33%), Postives = 137/150 (91.33%), Query Frame = 1


Query: 1   MAVSAVLGFTPVCS-SGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPI 60
           MA S V GFTP  + SGVM  SS+KLHFR+K N +LGFL+SQLSGI+ISSNHSLIS + I
Sbjct: 1   MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASI 60

Query: 61  S-APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           S APLRP+LQPVARR+CPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  STAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150

[Close]

BLAST of CmoCh14G018700 vs. NCBI nr
Match: gi|1009116930|ref|XP_015875042.1| (PREDICTED: 50S ribosomal protein L28, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 194.1 bits (492), Expect = 1.7e-46
Identity = 109/149 (73.15%), Postives = 119/149 (79.87%), Query Frame = 1


Query: 1   MAVSAVLG-FTPVCSSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPI 60
           MA SA LG F    SS   + S +KL  +  A  ELGF++SQLSG+KISS+ S   A PI
Sbjct: 1   MAASATLGVFLGNTSSFRKSESCNKLCLKRNAVAELGFVTSQLSGLKISSDFSYEPARPI 60

Query: 61  SAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKL 120
               +PA QPVARR+CPFTGKKANK N VSFSNHKTKKLQFVNLQYKKVWWEAGKR+VKL
Sbjct: 61  VTSFKPAFQPVARRICPFTGKKANKANKVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKL 120

Query: 121 RLSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           RLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 RLSTKALKTIEKNGLDAVAKKAGIDLRKE 149

[Close]

BLAST of CmoCh14G018700 vs. NCBI nr
Match: gi|728840449|gb|KHG19892.1| (50S ribosomal L28, chloroplastic [Gossypium arboreum])

HSP 1 Score: 189.1 bits (479), Expect = 5.5e-45
Identity = 106/150 (70.67%), Postives = 121/150 (80.67%), Query Frame = 1


Query: 1   MAVSAVLGFTPVCSSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISA--SP 60
           MA  A +G     SS V+  + ++    + ++P LGF++SQLSGIKIS N  ++ A   P
Sbjct: 1   MATLATVG-----SSSVLRFNKTEPLKTNPSSPFLGFVTSQLSGIKISCNLPVVVAPLKP 60

Query: 61  ISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           IS+P  PALQPVARR+CPFTGKKANK N VSFSNHKTKKLQFVNLQYKKVWWEAGKR+VK
Sbjct: 61  ISSPFTPALQPVARRICPFTGKKANKANKVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 145

[Close]

BLAST of CmoCh14G018700 vs. NCBI nr
Match: gi|590659707|ref|XP_007035202.1| (Ribosomal L28 family [Theobroma cacao])

HSP 1 Score: 188.0 bits (476), Expect = 1.2e-44
Identity = 104/136 (76.47%), Postives = 111/136 (81.62%), Query Frame = 1


Query: 21  SSSKLHFRSKANPE-------LGFLSSQLSGIKISSN-HSLISASPISAPLRPALQPVAR 80
           SSS L F+    P+       LGF++SQLSG+KIS N   L    PISAP  PAL+PVAR
Sbjct: 9   SSSVLRFQKPEPPKTRPSSQLLGFVTSQLSGVKISYNIPDLAPIKPISAPFTPALRPVAR 68

Query: 81  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKN 140
           RVCPFTGKKANK N VSFSNHKTKKLQFVNLQYKKVWWEAGKR+VKLRLSTKALKTIEKN
Sbjct: 69  RVCPFTGKKANKANKVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 128

Query: 141 GLDAVAKKAGIDLRKE 149
           GLDAVAKKAGIDLRKE
Sbjct: 129 GLDAVAKKAGIDLRKE 144

The following BLAST results are available for this feature:

BLAST of CmoCh14G018700 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK28_TOBAC	2.9e-46	74.38	50S ribosomal protein L28, chloroplastic OS=Nicotiana tabacum GN=RPL28 PE=1 SV=1	[more]
RK28_ARATH	4.3e-42	71.21	50S ribosomal protein L28, chloroplastic OS=Arabidopsis thaliana GN=RPL28 PE=2 S...	[more]
RL28_THEEB	3.6e-20	64.00	50S ribosomal protein L28 OS=Thermosynechococcus elongatus (strain BP-1) GN=rpmB...	[more]
RL28_CYAP4	6.1e-20	64.00	50S ribosomal protein L28 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rp...	[more]
RL28_SYNP2	6.1e-20	64.00	50S ribosomal protein L28 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / P...	[more]

BLAST of CmoCh14G018700 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L501_CUCSA	2.5e-60	85.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134810 PE=3 SV=1	[more]
A0A0B0P4T1_GOSAR	3.8e-45	70.67	50S ribosomal L28, chloroplastic OS=Gossypium arboreum GN=F383_24851 PE=3 SV=1	[more]
A0A061EN89_THECC	8.5e-45	76.47	Ribosomal L28 family OS=Theobroma cacao GN=TCM_020946 PE=3 SV=1	[more]
A0A0D2SB02_GOSRA	2.5e-44	70.00	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G052000 PE=3 SV=1	[more]
A0A0K9RD02_SPIOL	1.6e-43	69.59	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_085320 PE=3 SV=1	[more]

BLAST of CmoCh14G018700 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G33450.1	2.4e-43	71.21	Ribosomal L28 family	[more]

BLAST of CmoCh14G018700 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659076069\|ref\|XP_008438484.1\|	3.8e-62	87.33	PREDICTED: 50S ribosomal protein L28, chloroplastic [Cucumis melo]	[more]
gi\|449432524\|ref\|XP_004134049.1\|	3.5e-60	85.33	PREDICTED: 50S ribosomal protein L28, chloroplastic [Cucumis sativus]	[more]
gi\|1009116930\|ref\|XP_015875042.1\|	1.7e-46	73.15	PREDICTED: 50S ribosomal protein L28, chloroplastic [Ziziphus jujuba]	[more]
gi\|728840449\|gb\|KHG19892.1\|	5.5e-45	70.67	50S ribosomal L28, chloroplastic [Gossypium arboreum]	[more]
gi\|590659707\|ref\|XP_007035202.1\|	1.2e-44	76.47	Ribosomal L28 family [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001383	Ribosomal_L28
IPR026569	Ribo_L28/L24

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0019243	methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0006081	cellular aldehyde metabolic process
biological_process	GO:0032787	monocarboxylic acid metabolic process
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0016020	membrane
cellular_component	GO:0009547	plastid ribosome
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G018700.1	CmoCh14G018700.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001383	Ribosomal protein L28	HAMAP	MF_00373	Ribosomal_L28	coord: 70..146 score: 13
IPR001383	Ribosomal protein L28	TIGRFAMs	TIGR00009	TIGR00009	coord: 73..128 score: 2.5
IPR026569	Ribosomal protein L28/L24	PANTHER	PTHR13528	39S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL	coord: 34..148 score: 4.1
IPR026569	Ribosomal protein L28/L24	PFAM	PF00830	Ribosomal_L28	coord: 73..131 score: 1.0
None	No IPR available	GENE3D	G3DSA:2.30.170.40		coord: 73..146 score: 6.8
None	No IPR available	PANTHER	PTHR13528:SF3	SUBFAMILY NOT NAMED	coord: 34..148 score: 4.1
None	No IPR available	unknown	SSF143800	L28p-like	coord: 73..145 score: 5.69

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh14G018700	Cucsa.255610	Cucumber (Gy14) v1	cgycmoB0700
CmoCh14G018700	CmaCh14G018290	Cucurbita maxima (Rimu)	cmacmoB245
CmoCh14G018700	Cla021500	Watermelon (97103) v1	cmowmB231
CmoCh14G018700	Csa3G134810	Cucumber (Chinese Long) v2	cmocuB239
CmoCh14G018700	MELO3C006400	Melon (DHL92) v3.5.1	cmomeB230
CmoCh14G018700	ClCG05G004160	Watermelon (Charleston Gray)	cmowcgB219
CmoCh14G018700	CSPI03G11730	Wild cucumber (PI 183967)	cmocpiB243
CmoCh14G018700	Lsi05G017520	Bottle gourd (USVL1VR-Ls)	cmolsiB233
CmoCh14G018700	Cp4.1LG03g09810	Cucurbita pepo (Zucchini)	cmocpeB245
CmoCh14G018700	MELO3C006400.2	Melon (DHL92) v3.6.1	cmomedB260
CmoCh14G018700	CsaV3_3G011880	Cucumber (Chinese Long) v3	cmocucB0283
CmoCh14G018700	Cla97C05G084850	Watermelon (97103) v2	cmowmbB243
CmoCh14G018700	Bhi01G000502	Wax gourd	cmowgoB0320
CmoCh14G018700	CsGy3G011860	Cucumber (Gy14) v2	cgybcmoB290
CmoCh14G018700	Carg16546	Silver-seed gourd	carcmoB0328

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh14G018700	Wild cucumber (PI 183967)	cmocpiB228
CmoCh14G018700	Wild cucumber (PI 183967)	cmocpiB239
CmoCh14G018700	Cucumber (Chinese Long) v2	cmocuB225
CmoCh14G018700	Melon (DHL92) v3.5.1	cmomeB220
CmoCh14G018700	Melon (DHL92) v3.5.1	cmomeB221
CmoCh14G018700	Watermelon (Charleston Gray)	cmowcgB221
CmoCh14G018700	Watermelon (Charleston Gray)	cmowcgB227
CmoCh14G018700	Watermelon (97103) v1	cmowmB223
CmoCh14G018700	Watermelon (97103) v1	cmowmB239
CmoCh14G018700	Cucurbita pepo (Zucchini)	cmocpeB223
CmoCh14G018700	Cucurbita pepo (Zucchini)	cmocpeB230
CmoCh14G018700	Cucurbita pepo (Zucchini)	cmocpeB252
CmoCh14G018700	Cucurbita pepo (Zucchini)	cmocpeB254
CmoCh14G018700	Bottle gourd (USVL1VR-Ls)	cmolsiB213
CmoCh14G018700	Bottle gourd (USVL1VR-Ls)	cmolsiB235
CmoCh14G018700	Cucumber (Gy14) v2	cgybcmoB181
CmoCh14G018700	Cucumber (Gy14) v2	cgybcmoB288
CmoCh14G018700	Melon (DHL92) v3.6.1	cmomedB249
CmoCh14G018700	Melon (DHL92) v3.6.1	cmomedB250
CmoCh14G018700	Silver-seed gourd	carcmoB0319
CmoCh14G018700	Silver-seed gourd	carcmoB1049
CmoCh14G018700	Silver-seed gourd	carcmoB1284
CmoCh14G018700	Silver-seed gourd	carcmoB1443
CmoCh14G018700	Cucumber (Chinese Long) v3	cmocucB0267
CmoCh14G018700	Cucumber (Chinese Long) v3	cmocucB0279
CmoCh14G018700	Watermelon (97103) v2	cmowmbB246
CmoCh14G018700	Watermelon (97103) v2	cmowmbB253
CmoCh14G018700	Wax gourd	cmowgoB0299
CmoCh14G018700	Wax gourd	cmowgoB0333
CmoCh14G018700	Cucurbita moschata (Rifu)	cmocmoB198
CmoCh14G018700	Cucurbita moschata (Rifu)	cmocmoB207
CmoCh14G018700	Cucurbita moschata (Rifu)	cmocmoB213
CmoCh14G018700	Cucurbita moschata (Rifu)	cmocmoB224
CmoCh14G018700	Cucurbita moschata (Rifu)	cmocmoB233
CmoCh14G018700	Cucumber (Gy14) v1	cgycmoB1054
CmoCh14G018700	Cucurbita maxima (Rimu)	cmacmoB350
CmoCh14G018700	Cucurbita maxima (Rimu)	cmacmoB500
CmoCh14G018700	Cucurbita maxima (Rimu)	cmacmoB579
CmoCh14G018700	Cucurbita maxima (Rimu)	cmacmoB797
CmoCh14G018700	Cucurbita maxima (Rimu)	cmacmoB883