CsaV3_3G010200 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G010200
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 8203035 .. 8203252 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCCGGCTTCTTTCAGAAATACCGCACGCCCCCAATACGAAACACTACACCACGTCGTTTTCAGCCGGTGATGTTGAACGCCGACAACCCACTGACAGAGTACTGCCCGTGGGCAAATGGGCAGCTGCCCAATCTGCCATTAAAGCCGATCTTGCTTACTTGGATCGCACCATCAATTGTAGAGAAGCATCTGAAAGGGAATTGGATTCTCTACT

mRNA sequence

ATGAGCCGGCTTCTTTCAGAAATACCGCACGCCCCCAATACGAAACACTACACCACGTCGTTTTCAGCCGGTGATGTTGAACGCCGACAACCCACTGACAGAGTACTGCCCGTGGGCAAATGGGCAGCTGCCCAATCTGCCATTAAAGCCGATCTTGCTTACTTGGATCGCACCATCAATTGTAGAGAAGCATCTGAAAGGGAATTGGATTCTCTACT

Coding sequence (CDS)

ATGAGCCGGCTTCTTTCAGAAATACCGCACGCCCCCAATACGAAACACTACACCACGTCGTTTTCAGCCGGTGATGTTGAACGCCGACAACCCACTGACAGAGTACTGCCCGTGGGCAAATGGGCAGCTGCCCAATCTGCCATTAAAGCCGATCTTGCTTACTTGGATCGCACCATCAATTGTAGAGAAGCATCTGAAAGGGAATTGGATTCTCTACT

Protein sequence

MSRLLSEIPHAPNTKHYTTSFSAGDVERRQPTDRVLPVGKWAAAQSAIKADLAYLDRTINCREASERELDSLX
Homology
[Close]
BLAST of CsaV3_3G010200 vs. NCBI nr
Match: KGN56653.1 (hypothetical protein Csa_3G127160 [Cucumis sativus])

HSP 1 Score: 146.7 bits (369), Expect = 3.0e-32
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0 

Query: 1  MSRLLSEIPHAPNTKHYTTSFSAGDVERRQPTDRVLPVGKWAAAQSAIKADLAYLDRTIN 60
          MSRLLSEIPHAPNTKHYTTSFSAGDVERRQPTDRVLPVGKWAAAQSAIKADLAYLDRTIN
Sbjct: 1  MSRLLSEIPHAPNTKHYTTSFSAGDVERRQPTDRVLPVGKWAAAQSAIKADLAYLDRTIN 60

Query: 61 CREASERELDSL 73
          CREASERELDSL
Sbjct: 61 CREASERELDSL 72

[Close]
BLAST of CsaV3_3G010200 vs. TrEMBL
Match: tr|A0A0A0L4H2|A0A0A0L4H2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127160 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.0e-32
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0 

Query: 1  MSRLLSEIPHAPNTKHYTTSFSAGDVERRQPTDRVLPVGKWAAAQSAIKADLAYLDRTIN 60
          MSRLLSEIPHAPNTKHYTTSFSAGDVERRQPTDRVLPVGKWAAAQSAIKADLAYLDRTIN
Sbjct: 1  MSRLLSEIPHAPNTKHYTTSFSAGDVERRQPTDRVLPVGKWAAAQSAIKADLAYLDRTIN 60

Query: 61 CREASERELDSL 73
          CREASERELDSL
Sbjct: 61 CREASERELDSL 72

The following BLAST results are available for this feature:
BLAST of CsaV3_3G010200 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN56653.13.0e-32100.00hypothetical protein Csa_3G127160 [Cucumis sativus][more]
BLAST of CsaV3_3G010200 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G010200 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G010200 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L4H2|A0A0A0L4H2_CUCSA2.0e-32100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127160 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G010200.1CsaV3_3G010200.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 55..72
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G010200CSPI03G10050Wild cucumber (PI 183967)cpicucB144
CsaV3_3G010200CsGy3G010150Cucumber (Gy14) v2cgybcucB117
CsaV3_3G010200MELO3C006240Melon (DHL92) v3.5.1cucmeB236
CsaV3_3G010200MELO3C006240.2Melon (DHL92) v3.6.1cucmedB230
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G010200Cucumber (Chinese Long) v3cuccucB111
CsaV3_3G010200Cucumber (Chinese Long) v3cuccucB113
CsaV3_3G010200Cucumber (Chinese Long) v3cuccucB137
CsaV3_3G010200Silver-seed gourdcarcucB0260
CsaV3_3G010200Silver-seed gourdcarcucB0652
CsaV3_3G010200Silver-seed gourdcarcucB1003
CsaV3_3G010200Silver-seed gourdcarcucB1124
CsaV3_3G010200Cucumber (Gy14) v2cgybcucB121
CsaV3_3G010200Cucumber (Gy14) v2cgybcucB269
CsaV3_3G010200Cucumber (Gy14) v1cgycucB387
CsaV3_3G010200Cucumber (Gy14) v1cgycucB489
CsaV3_3G010200Cucumber (Gy14) v1cgycucB553
CsaV3_3G010200Cucurbita maxima (Rimu)cmacucB0003
CsaV3_3G010200Cucurbita maxima (Rimu)cmacucB0291
CsaV3_3G010200Cucurbita maxima (Rimu)cmacucB0425
CsaV3_3G010200Cucurbita maxima (Rimu)cmacucB0965
CsaV3_3G010200Cucurbita maxima (Rimu)cmacucB0971
CsaV3_3G010200Cucurbita maxima (Rimu)cmacucB1057
CsaV3_3G010200Cucurbita moschata (Rifu)cmocucB0283
CsaV3_3G010200Cucurbita moschata (Rifu)cmocucB0420
CsaV3_3G010200Cucurbita moschata (Rifu)cmocucB0711
CsaV3_3G010200Wild cucumber (PI 183967)cpicucB148
CsaV3_3G010200Cucurbita moschata (Rifu)cmocucB0953
CsaV3_3G010200Cucurbita moschata (Rifu)cmocucB1039
CsaV3_3G010200Cucurbita pepo (Zucchini)cpecucB0153
CsaV3_3G010200Cucurbita pepo (Zucchini)cpecucB0381
CsaV3_3G010200Cucurbita pepo (Zucchini)cpecucB0759
CsaV3_3G010200Cucurbita pepo (Zucchini)cpecucB0900
CsaV3_3G010200Cucurbita pepo (Zucchini)cpecucB1056
CsaV3_3G010200Wild cucumber (PI 183967)cpicucB335
CsaV3_3G010200Bottle gourd (USVL1VR-Ls)cuclsiB170
CsaV3_3G010200Bottle gourd (USVL1VR-Ls)cuclsiB228
CsaV3_3G010200Bottle gourd (USVL1VR-Ls)cuclsiB242
CsaV3_3G010200Melon (DHL92) v3.5.1cucmeB179
CsaV3_3G010200Melon (DHL92) v3.5.1cucmeB227
CsaV3_3G010200Melon (DHL92) v3.6.1cucmedB170
CsaV3_3G010200Melon (DHL92) v3.6.1cucmedB220
CsaV3_3G010200Watermelon (Charleston Gray)cucwcgB188
CsaV3_3G010200Watermelon (Charleston Gray)cucwcgB225
CsaV3_3G010200Watermelon (Charleston Gray)cucwcgB250
CsaV3_3G010200Watermelon (97103) v1cucwmB199
CsaV3_3G010200Watermelon (97103) v1cucwmB239
CsaV3_3G010200Watermelon (97103) v1cucwmB285
CsaV3_3G010200Watermelon (97103) v2cucwmbB186
CsaV3_3G010200Watermelon (97103) v2cucwmbB206
CsaV3_3G010200Watermelon (97103) v2cucwmbB229
CsaV3_3G010200Wax gourdcucwgoB263
CsaV3_3G010200Wax gourdcucwgoB273