CsaV3_3G004090 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G004090
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	leucine-rich repeat extensin-like protein 5
Location	chr3 : 3480099 .. 3481581 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTCACGAGCCTCCCTTTCTTTTTTCTTTTTTCTTTTTCTTTTATAATAATAATCAAATGTGACCGTCTCTACCAGTTTTCCTCTGCCATCTAACGACTACTTTACCCGTGCTAGCCGGTCCCATCTCCCCCAACGGTCACCTTTTCCTTTCCGTCCTCTTTCTTCACACCTATTAACCTTCACTATATATATATATATCTTCACCATTCACTAACAAATTCATTTCCAATTCCGGTCCCATTTTTGACTTCATATTTCGGACCGCCGGTCTAAAACACAGAGAGAAATCCCCCTCCCCCCCTCAATAGCATGGCCAAGTTTGCTTTGTTTATTACTCTTCTCTTTTTGTTTTCGCCATTTATTGGCCTCGTTTTCGCTAACGATTCCCCTGCCGCCTCCCCAAAACCTCCTAAAACGCTTCATTCTCCTTCTCCGGCGCATTCTCCGGTTGTTTCGCCGCCGAGTCACACTGTATCTCCGTCTAAATCTCCGGCTGCTTCTCCACCGGTCGTAACTCCGGTAATTTCTCCGGCATTGGCTACCCCACCATCTGTAGCGCCCTCGAAGGCTCCGGCAGCGGTACCTATTTCTTCGCCGAGTGAAAATTCTCCGCTTTCGTCGCCGCCGTCTCCTCTCCCTTTCGATGCTTCTCCGGTTGGGGCTCCAGTGGAACCAGAAATCCCGGCAAATCCGATTTCTGGAGGGTCTCCCGTGGGGACGCCGTCGATATTTCCGTCGAGCAGTAGCCCACCGATGGCTACTCCGACAAGCTTAGCACCGGAAACGGCGGAGAGGCCTGGAAACGACGCGTCGGCGTCAGGAAAGTACAAGATCGGGGTGGAGGTTATTTTGAGTGGGCTTTCTATTTGGGCTGCTTGGGCCTTTTGAAATTAGGCCCATGTGTTTAAATTTTGGTGGTAGGTGTTTTTGAGATTATATTGTATTCTTTTTTGACTCAACGTGTGGGGTTCTTCTTTTTATTCAATTTTCTTATATGAATATAATGTTTTTGGTATATTTAGGGTTATTAAATTAATAATAGTTAAACTAAATTGCTTGAAATATTCAATCGATTGAAGTAGAAACAAAATTTCCTCTATCCTAAACTAGGGTTAGGGTGGTAGTTATAGTTATACTTCAAACTTGCCTAATAAGTTTAATGATTCAAACTTACCTAATAGGTGGAATGCATAGTGACAGAGTTATACCTAAAATATTATTGAAAAAGAGAACATAATTGATAAAAGGAAATAAAAATGGATGATGAATATTTATAGTATGGGTTGAGGAGAAAATATCTAGAAACACCATGGGCATACTGTTTCGTTGAGAATGAGTGAGTAGTTGAGAGAATAAGGCAAAAAAATGGTACTCGTGGATTGAGATGCGGCCAATCATCCAAATTATACACATCACCTTTCATAGATACTTTCTCTTCTTATCCATCTTTCTGGGATAACTCATGCCAACTAAGATACGACG

mRNA sequence

ATGGCCAAGTTTGCTTTGTTTATTACTCTTCTCTTTTTGTTTTCGCCATTTATTGGCCTCGTTTTCGCTAACGATTCCCCTGCCGCCTCCCCAAAACCTCCTAAAACGCTTCATTCTCCTTCTCCGGCGCATTCTCCGGTTGTTTCGCCGCCGAGTCACACTGTATCTCCGTCTAAATCTCCGGCTGCTTCTCCACCGGTCGTAACTCCGGTAATTTCTCCGGCATTGGCTACCCCACCATCTGTAGCGCCCTCGAAGGCTCCGGCAGCGGTACCTATTTCTTCGCCGAGTGAAAATTCTCCGCTTTCGTCGCCGCCGTCTCCTCTCCCTTTCGATGCTTCTCCGGTTGGGGCTCCAGTGGAACCAGAAATCCCGGCAAATCCGATTTCTGGAGGGTCTCCCGTGGGGACGCCGTCGATATTTCCGTCGAGCAGTAGCCCACCGATGGCTACTCCGACAAGCTTAGCACCGGAAACGGCGGAGAGGCCTGGAAACGACGCGTCGGCGTCAGGAAAGTACAAGATCGGGGTGGAGGTTATTTTGAGTGGGCTTTCTATTTGGGCTGCTTGGGCCTTTTGA

Coding sequence (CDS)

ATGGCCAAGTTTGCTTTGTTTATTACTCTTCTCTTTTTGTTTTCGCCATTTATTGGCCTCGTTTTCGCTAACGATTCCCCTGCCGCCTCCCCAAAACCTCCTAAAACGCTTCATTCTCCTTCTCCGGCGCATTCTCCGGTTGTTTCGCCGCCGAGTCACACTGTATCTCCGTCTAAATCTCCGGCTGCTTCTCCACCGGTCGTAACTCCGGTAATTTCTCCGGCATTGGCTACCCCACCATCTGTAGCGCCCTCGAAGGCTCCGGCAGCGGTACCTATTTCTTCGCCGAGTGAAAATTCTCCGCTTTCGTCGCCGCCGTCTCCTCTCCCTTTCGATGCTTCTCCGGTTGGGGCTCCAGTGGAACCAGAAATCCCGGCAAATCCGATTTCTGGAGGGTCTCCCGTGGGGACGCCGTCGATATTTCCGTCGAGCAGTAGCCCACCGATGGCTACTCCGACAAGCTTAGCACCGGAAACGGCGGAGAGGCCTGGAAACGACGCGTCGGCGTCAGGAAAGTACAAGATCGGGGTGGAGGTTATTTTGAGTGGGCTTTCTATTTGGGCTGCTTGGGCCTTTTGA

Protein sequence

MAKFALFITLLFLFSPFIGLVFANDSPAASPKPPKTLHSPSPAHSPVVSPPSHTVSPSKSPAASPPVVTPVISPALATPPSVAPSKAPAAVPISSPSENSPLSSPPSPLPFDASPVGAPVEPEIPANPISGGSPVGTPSIFPSSSSPPMATPTSLAPETAERPGNDASASGKYKIGVEVILSGLSIWAAWAF

Homology

[Close]

BLAST of CsaV3_3G004090 vs. NCBI nr
Match: XP_011652729.1 (PREDICTED: extensin-like [Cucumis sativus] >KGN56020.1 Lipid binding protein [Cucumis sativus])

HSP 1 Score: 186.4 bits (472), Expect = 9.0e-44
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   MAKFALFITLLFLFSPFIGLVFANDSPAASPKPPKTLHSPSPXXXXXXXXXXXXXXXXXX 60
           MAKFALFITLLFLFSPFIGLVFANDSPAASPKPPKTLHSPSPXXXXXXXXXXXXXXXXXX
Sbjct: 1   MAKFALFITLLFLFSPFIGLVFANDSPAASPKPPKTLHSPSPXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 EPEIPANPISGGSPVGTPSIFPSSSSXXMATPTSLAPETAERPGNDASASGKYKIGVEVI 180
           EPEIPANPISGGSPVGTPSIFPSSSSXXMATPTSLAPETAERPGNDASASGKYKIGVEVI
Sbjct: 121 EPEIPANPISGGSPVGTPSIFPSSSSXXMATPTSLAPETAERPGNDASASGKYKIGVEVI 180

Query: 181 LSGLSIWAAWAF 193
           LSGLSIWAAWAF
Sbjct: 181 LSGLSIWAAWAF 192

[Close]

BLAST of CsaV3_3G004090 vs. NCBI nr
Match: XP_016900598.1 (PREDICTED: leucine-rich repeat extensin-like protein 5 [Cucumis melo])

HSP 1 Score: 134.0 bits (336), Expect = 5.3e-28
Identity = 67/72 (93.06%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 121 EPEIPANPISGGSPVGTPSIFPSSSSXXMATPTSLAPETAERPGNDASASGKYKIGVEVI 180
           EPEIPANPISGGSPVGTPSIFPSSSS  MATPT+LAPETAERPGNDASASG+YKIGVEV+
Sbjct: 55  EPEIPANPISGGSPVGTPSIFPSSSSPPMATPTNLAPETAERPGNDASASGRYKIGVEVM 114

Query: 181 LSGLSIWAAWAF 193
           LSGLSIWAAWAF
Sbjct: 115 LSGLSIWAAWAF 126

[Close]

BLAST of CsaV3_3G004090 vs. NCBI nr
Match: XP_023552940.1 (gibberellin-regulated protein 14-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 111.3 bits (277), Expect = 3.7e-21
Identity = 158/198 (79.80%), Postives = 166/198 (83.84%), Query Frame = 0


Query: 1   MAKFALFITLLFLFSPFIGLVFANDSPAASPKPPKTLHSPS------PXXXXXXXXXXXX 60
           M KF LF T+L LFS F  +VF  DSPAA+PKP KT HSPS       XXXXXXXXXXXX
Sbjct: 1   MEKFPLF-TVLILFSAFTAVVFGYDSPAAAPKPTKTAHSPSXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXEPEIPANPISGGSPVGTPSIFPSSSSXXMATPTSLAPETAERPGNDASASGKYK 180
           XXXXXX      NPI+GG+PV TPSIFPSSSS  M+TP SLAPETAE PG DASASGKY+
Sbjct: 121 XXXXXXXXXXXXNPITGGTPVETPSIFPSSSSPPMSTPASLAPETAELPGKDASASGKYR 180

Query: 181 IGVEVILSGLSIWAAWAF 193
           IG EVILSGLS+WA WAF
Sbjct: 181 IGAEVILSGLSLWAVWAF 197

[Close]

BLAST of CsaV3_3G004090 vs. NCBI nr
Match: XP_022158207.1 (classical arabinogalactan protein 4-like [Momordica charantia])

HSP 1 Score: 70.9 bits (172), Expect = 5.5e-09
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 0


Query: 154 SLAPETAERPGNDASAS-GKYKIGVEVILSGLSIWAAWAF 193
           SLAPETAERPGNDASAS  KYKIG EVILSG+SIWAAWAF
Sbjct: 166 SLAPETAERPGNDASASEWKYKIGAEVILSGISIWAAWAF 205

[Close]

BLAST of CsaV3_3G004090 vs. NCBI nr
Match: XP_022932347.1 (gibberellin-regulated protein 14-like [Cucurbita moschata])

HSP 1 Score: 70.1 bits (170), Expect = 9.4e-09
Identity = 33/38 (86.84%), Postives = 34/38 (89.47%), Query Frame = 0


Query: 155 LAPETAERPGNDASASGKYKIGVEVILSGLSIWAAWAF 193
           LAPETAE PG DASASGKY+IG EVILSGLSIWA WAF
Sbjct: 164 LAPETAELPGKDASASGKYRIGAEVILSGLSIWAVWAF 201

[Close]

BLAST of CsaV3_3G004090 vs. TrEMBL
Match: tr|A0A0A0L269|A0A0A0L269_CUCSA (Lipid binding protein OS=Cucumis sativus OX=3659 GN=Csa_3G047810 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 5.9e-44
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   MAKFALFITLLFLFSPFIGLVFANDSPAASPKPPKTLHSPSPXXXXXXXXXXXXXXXXXX 60
           MAKFALFITLLFLFSPFIGLVFANDSPAASPKPPKTLHSPSPXXXXXXXXXXXXXXXXXX
Sbjct: 1   MAKFALFITLLFLFSPFIGLVFANDSPAASPKPPKTLHSPSPXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 EPEIPANPISGGSPVGTPSIFPSSSSXXMATPTSLAPETAERPGNDASASGKYKIGVEVI 180
           EPEIPANPISGGSPVGTPSIFPSSSSXXMATPTSLAPETAERPGNDASASGKYKIGVEVI
Sbjct: 121 EPEIPANPISGGSPVGTPSIFPSSSSXXMATPTSLAPETAERPGNDASASGKYKIGVEVI 180

Query: 181 LSGLSIWAAWAF 193
           LSGLSIWAAWAF
Sbjct: 181 LSGLSIWAAWAF 192

[Close]

BLAST of CsaV3_3G004090 vs. TrEMBL
Match: tr|A0A1S4DX95|A0A1S4DX95_CUCME (leucine-rich repeat extensin-like protein 5 OS=Cucumis melo OX=3656 GN=LOC107990970 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.5e-28
Identity = 67/72 (93.06%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 121 EPEIPANPISGGSPVGTPSIFPSSSSXXMATPTSLAPETAERPGNDASASGKYKIGVEVI 180
           EPEIPANPISGGSPVGTPSIFPSSSS  MATPT+LAPETAERPGNDASASG+YKIGVEV+
Sbjct: 55  EPEIPANPISGGSPVGTPSIFPSSSSPPMATPTNLAPETAERPGNDASASGRYKIGVEVM 114

Query: 181 LSGLSIWAAWAF 193
           LSGLSIWAAWAF
Sbjct: 115 LSGLSIWAAWAF 126

The following BLAST results are available for this feature:

BLAST of CsaV3_3G004090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652729.1	9.0e-44	100.00	PREDICTED: extensin-like [Cucumis sativus] >KGN56020.1 Lipid binding protein [Cu...	[more]
XP_016900598.1	5.3e-28	93.06	PREDICTED: leucine-rich repeat extensin-like protein 5 [Cucumis melo]	[more]
XP_023552940.1	3.7e-21	79.80	gibberellin-regulated protein 14-like [Cucurbita pepo subsp. pepo]	[more]
XP_022158207.1	5.5e-09	90.00	classical arabinogalactan protein 4-like [Momordica charantia]	[more]
XP_022932347.1	9.4e-09	86.84	gibberellin-regulated protein 14-like [Cucurbita moschata]	[more]

BLAST of CsaV3_3G004090 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G004090 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G004090 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L269\|A0A0A0L269_CUCSA	5.9e-44	100.00	Lipid binding protein OS=Cucumis sativus OX=3659 GN=Csa_3G047810 PE=4 SV=1	[more]
tr\|A0A1S4DX95\|A0A1S4DX95_CUCME	3.5e-28	93.06	leucine-rich repeat extensin-like protein 5 OS=Cucumis melo OX=3656 GN=LOC107990...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G004090.1	CsaV3_3G004090.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..170

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G004090	CSPI03G04090	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G004090	Cucsa.042010	Cucumber (Gy14) v1	cgycucB017
CsaV3_3G004090	CmaCh16G009640	Cucurbita maxima (Rimu)	cmacucB0381
CsaV3_3G004090	CmoCh16G010050	Cucurbita moschata (Rifu)	cmocucB0378
CsaV3_3G004090	Cp4.1LG14g07900	Cucurbita pepo (Zucchini)	cpecucB0256
CsaV3_3G004090	CsGy3G004090	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G004090	Carg22325	Silver-seed gourd	carcucB0621
CsaV3_3G004090	Cla004461	Watermelon (97103) v1	cucwmB210
CsaV3_3G004090	MELO3C014104	Melon (DHL92) v3.5.1	cucmeB246
CsaV3_3G004090	ClCG10G004290	Watermelon (Charleston Gray)	cucwcgB194
CsaV3_3G004090	Lsi05G004950	Bottle gourd (USVL1VR-Ls)	cuclsiB217
CsaV3_3G004090	MELO3C014104.2	Melon (DHL92) v3.6.1	cucmedB231
CsaV3_3G004090	Cla97C10G188730	Watermelon (97103) v2	cucwmbB182
CsaV3_3G004090	Bhi11G000360	Wax gourd	cucwgoB223

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G004090	Silver-seed gourd	carcucB0008
CsaV3_3G004090	Cucurbita maxima (Rimu)	cmacucB0659
CsaV3_3G004090	Cucurbita maxima (Rimu)	cmacucB0975
CsaV3_3G004090	Cucurbita moschata (Rifu)	cmocucB0961
CsaV3_3G004090	Cucurbita pepo (Zucchini)	cpecucB0342
CsaV3_3G004090	Cucurbita pepo (Zucchini)	cpecucB1047
CsaV3_3G004090	Bottle gourd (USVL1VR-Ls)	cuclsiB175
CsaV3_3G004090	Wax gourd	cucwgoB328