Cla97C10G188730 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C10G188730
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	leucine-rich repeat extensin-like protein 5
Location	Cla97Chr10 : 4830026 .. 4830631 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAAATTTGCTCTGTTTACTGTTCTGGTTTTGCTTGCGCCATTCACCGGCGTCGTTTTCGGTTACGATTCGCCGGCCGCCGCTCCAAAACCCACTAAAACAGCTCATTCTCCATCTCCGGCGCATTCTCCTGCGGTTTCGCCGCCGAGTCACTCGGCATCTCCGTCGAAGTCTCCTACTGTTTCTCCACCGGTGACAACTCCGGCTAGTTCTCCGGCATTGGCTACCCCACCATCTGTAGCGCCCCCGAAGGCTCCGGCTTCGGCGCCGGTTTCTTCGCCGGCGGCAAGTCCGGTAGGGAGTGAAAATTCGCCGATTTCGTCCCCGCCGTCTCCTCCGTCTTTCGATGCTTCTCCGGTGGCTACGCCGGTTGGGGCTCCAGTGGAACCAGAAATTCCTGCAAATCCGATCTCGGGAGGGTCTCCGGTGGGGACGCCGTCGATATTCCCGTCGAGTAGCAGCCCGCCAATGTCGACTCCGGCGAGCCTAGCACCGGAAACGGCGGAGAGGCCTGGAAACCACGCGTCGGCGCTAGGGAAGTACAATATCGGGGTGGAGGTTATTTTAAGTGGGCTTTCTATTTGGGCCGCTTGGGCCTTTTGA

mRNA sequence

ATGGACAAATTTGCTCTGTTTACTGTTCTGGTTTTGCTTGCGCCATTCACCGGCGTCGTTTTCGGTTACGATTCGCCGGCCGCCGCTCCAAAACCCACTAAAACAGCTCATTCTCCATCTCCGGCGCATTCTCCTGCGGTTTCGCCGCCGAGTCACTCGGCATCTCCGTCGAAGTCTCCTACTGTTTCTCCACCGGTGACAACTCCGGCTAGTTCTCCGGCATTGGCTACCCCACCATCTGTAGCGCCCCCGAAGGCTCCGGCTTCGGCGCCGGTTTCTTCGCCGGCGGCAAGTCCGGTAGGGAGTGAAAATTCGCCGATTTCGTCCCCGCCGTCTCCTCCGTCTTTCGATGCTTCTCCGGTGGCTACGCCGGTTGGGGCTCCAGTGGAACCAGAAATTCCTGCAAATCCGATCTCGGGAGGGTCTCCGGTGGGGACGCCGTCGATATTCCCGTCGAGTAGCAGCCCGCCAATGTCGACTCCGGCGAGCCTAGCACCGGAAACGGCGGAGAGGCCTGGAAACCACGCGTCGGCGCTAGGGAAGTACAATATCGGGGTGGAGGTTATTTTAAGTGGGCTTTCTATTTGGGCCGCTTGGGCCTTTTGA

Coding sequence (CDS)

ATGGACAAATTTGCTCTGTTTACTGTTCTGGTTTTGCTTGCGCCATTCACCGGCGTCGTTTTCGGTTACGATTCGCCGGCCGCCGCTCCAAAACCCACTAAAACAGCTCATTCTCCATCTCCGGCGCATTCTCCTGCGGTTTCGCCGCCGAGTCACTCGGCATCTCCGTCGAAGTCTCCTACTGTTTCTCCACCGGTGACAACTCCGGCTAGTTCTCCGGCATTGGCTACCCCACCATCTGTAGCGCCCCCGAAGGCTCCGGCTTCGGCGCCGGTTTCTTCGCCGGCGGCAAGTCCGGTAGGGAGTGAAAATTCGCCGATTTCGTCCCCGCCGTCTCCTCCGTCTTTCGATGCTTCTCCGGTGGCTACGCCGGTTGGGGCTCCAGTGGAACCAGAAATTCCTGCAAATCCGATCTCGGGAGGGTCTCCGGTGGGGACGCCGTCGATATTCCCGTCGAGTAGCAGCCCGCCAATGTCGACTCCGGCGAGCCTAGCACCGGAAACGGCGGAGAGGCCTGGAAACCACGCGTCGGCGCTAGGGAAGTACAATATCGGGGTGGAGGTTATTTTAAGTGGGCTTTCTATTTGGGCCGCTTGGGCCTTTTGA

Protein sequence

MDKFALFTVLVLLAPFTGVVFGYDSPAAAPKPTKTAHSPSPAHSPAVSPPSHSASPSKSPTVSPPVTTPASSPALATPPSVAPPKAPASAPVSSPAASPVGSENSPISSPPSPPSFDASPVATPVGAPVEPEIPANPISGGSPVGTPSIFPSSSSPPMSTPASLAPETAERPGNHASALGKYNIGVEVILSGLSIWAAWAF

Homology

[Close]

BLAST of Cla97C10G188730 vs. NCBI nr
Match: XP_022932347.1 (gibberellin-regulated protein 14-like [Cucurbita moschata])

HSP 1 Score: 83.2 bits (204), Expect = 1.1e-12
Identity = 187/201 (93.03%), Postives = 190/201 (94.53%), Query Frame = 0


Query: 1   MDKFALFTVLVLLAPFTGVVFGYDSPAAAPKPTKTAHSPSXXXXXXXXXXXXXXXXXXXX 60
           M+KFALFTVL+L + FT VV GYDSPAAAPKPTKTAHSPSXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MEKFALFTVLILFSAFTAVVLGYDSPAAAPKPTKTAHSPSXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAPETAERPGNHASALG 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAPETAE PG  ASA G
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAPETAELPGKDASASG 180

Query: 181 KYNIGVEVILSGLSIWAAWAF 202
           KY IG EVILSGLSIWA WAF
Sbjct: 181 KYRIGAEVILSGLSIWAVWAF 201

[Close]

BLAST of Cla97C10G188730 vs. NCBI nr
Match: XP_023552940.1 (gibberellin-regulated protein 14-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 78.6 bits (192), Expect = 2.7e-11
Identity = 154/201 (76.62%), Postives = 158/201 (78.61%), Query Frame = 0


Query: 1   MDKFALFTVLVLLAPFTGVVFGYDSPAAAPKPTKTAHSPSXXXXXXXXXXXXXXXXXXXX 60
           M+KF LFTVL+L + FT VVFGYDSPAAAPKPTKTAHSPS    XXXXXXXXXXXXXXXX
Sbjct: 1   MEKFPLFTVLILFSAFTAVVFGYDSPAAAPKPTKTAHSPS----XXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAPETAERPGNHASALG 180
           XXXXXXXXXXXXXXX                            LAPETAE PG  ASA G
Sbjct: 121 XXXXXXXXXXXXXXXNPITGGTPVETPSIFPSSSSPPMSTPASLAPETAELPGKDASASG 180

Query: 181 KYNIGVEVILSGLSIWAAWAF 202
           KY IG EVILSGLS+WA WAF
Sbjct: 181 KYRIGAEVILSGLSLWAVWAF 197

[Close]

BLAST of Cla97C10G188730 vs. NCBI nr
Match: XP_011652729.1 (PREDICTED: extensin-like [Cucumis sativus] >KGN56020.1 Lipid binding protein [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 1.2e-09
Identity = 35/38 (92.11%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 164 LAPETAERPGNHASALGKYNIGVEVILSGLSIWAAWAF 202
           LAPETAERPGN ASA GKY IGVEVILSGLSIWAAWAF
Sbjct: 155 LAPETAERPGNDASASGKYKIGVEVILSGLSIWAAWAF 192

[Close]

BLAST of Cla97C10G188730 vs. NCBI nr
Match: XP_016900598.1 (PREDICTED: leucine-rich repeat extensin-like protein 5 [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 5.7e-09
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 164 LAPETAERPGNHASALGKYNIGVEVILSGLSIWAAWAF 202
           LAPETAERPGN ASA G+Y IGVEV+LSGLSIWAAWAF
Sbjct: 89  LAPETAERPGNDASASGRYKIGVEVMLSGLSIWAAWAF 126

[Close]

BLAST of Cla97C10G188730 vs. NCBI nr
Match: XP_023007601.1 (gibberellin-regulated protein 14-like [Cucurbita maxima])

HSP 1 Score: 63.5 bits (153), Expect = 9.2e-07
Identity = 30/38 (78.95%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 164 LAPETAERPGNHASALGKYNIGVEVILSGLSIWAAWAF 202
           LAPETAE PG  AS  GKY IG EVILSGLSIWA WAF
Sbjct: 164 LAPETAELPGKDASTSGKYRIGAEVILSGLSIWAVWAF 201

[Close]

BLAST of Cla97C10G188730 vs. TrEMBL
Match: tr|A0A0A0L269|A0A0A0L269_CUCSA (Lipid binding protein OS=Cucumis sativus OX=3659 GN=Csa_3G047810 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 7.6e-10
Identity = 35/38 (92.11%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 164 LAPETAERPGNHASALGKYNIGVEVILSGLSIWAAWAF 202
           LAPETAERPGN ASA GKY IGVEVILSGLSIWAAWAF
Sbjct: 155 LAPETAERPGNDASASGKYKIGVEVILSGLSIWAAWAF 192

[Close]

BLAST of Cla97C10G188730 vs. TrEMBL
Match: tr|A0A1S4DX95|A0A1S4DX95_CUCME (leucine-rich repeat extensin-like protein 5 OS=Cucumis melo OX=3656 GN=LOC107990970 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.8e-09
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 164 LAPETAERPGNHASALGKYNIGVEVILSGLSIWAAWAF 202
           LAPETAERPGN ASA G+Y IGVEV+LSGLSIWAAWAF
Sbjct: 89  LAPETAERPGNDASASGRYKIGVEVMLSGLSIWAAWAF 126

The following BLAST results are available for this feature:

BLAST of Cla97C10G188730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932347.1	1.1e-12	93.03	gibberellin-regulated protein 14-like [Cucurbita moschata]	[more]
XP_023552940.1	2.7e-11	76.62	gibberellin-regulated protein 14-like [Cucurbita pepo subsp. pepo]	[more]
XP_011652729.1	1.2e-09	92.11	PREDICTED: extensin-like [Cucumis sativus] >KGN56020.1 Lipid binding protein [Cu...	[more]
XP_016900598.1	5.7e-09	86.84	PREDICTED: leucine-rich repeat extensin-like protein 5 [Cucumis melo]	[more]
XP_023007601.1	9.2e-07	78.95	gibberellin-regulated protein 14-like [Cucurbita maxima]	[more]

BLAST of Cla97C10G188730 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L269\|A0A0A0L269_CUCSA	7.6e-10	92.11	Lipid binding protein OS=Cucumis sativus OX=3659 GN=Csa_3G047810 PE=4 SV=1	[more]
tr\|A0A1S4DX95\|A0A1S4DX95_CUCME	3.8e-09	86.84	leucine-rich repeat extensin-like protein 5 OS=Cucumis melo OX=3656 GN=LOC107990...	[more]

BLAST of Cla97C10G188730 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C10G188730 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C10G188730.1	Cla97C10G188730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..176
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 141..162

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C10G188730	Cla004461	Watermelon (97103) v1	wmwmbB057
Cla97C10G188730	Csa3G047810	Cucumber (Chinese Long) v2	cuwmbB181
Cla97C10G188730	MELO3C014104	Melon (DHL92) v3.5.1	mewmbB430
Cla97C10G188730	ClCG10G004290	Watermelon (Charleston Gray)	wcgwmbB038
Cla97C10G188730	CSPI03G04090	Wild cucumber (PI 183967)	cpiwmbB184
Cla97C10G188730	Cucsa.042010	Cucumber (Gy14) v1	cgywmbB016
Cla97C10G188730	CmaCh16G009640	Cucurbita maxima (Rimu)	cmawmbB338
Cla97C10G188730	CmoCh16G010050	Cucurbita moschata (Rifu)	cmowmbB321
Cla97C10G188730	Lsi05G004950	Bottle gourd (USVL1VR-Ls)	lsiwmbB322
Cla97C10G188730	CsGy3G004090	Cucumber (Gy14) v2	cgybwmbB174
Cla97C10G188730	MELO3C014104.2	Melon (DHL92) v3.6.1	medwmbB415
Cla97C10G188730	Carg22325	Silver-seed gourd	carwmbB0613
Cla97C10G188730	CsaV3_3G004090	Cucumber (Chinese Long) v3	cucwmbB182
Cla97C10G188730	Bhi11G000360	Wax gourd	wgowmbB003

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C10G188730	Silver-seed gourd	carwmbB0007
Cla97C10G188730	Silver-seed gourd	carwmbB0357
Cla97C10G188730	Cucurbita maxima (Rimu)	cmawmbB566
Cla97C10G188730	Cucurbita maxima (Rimu)	cmawmbB845
Cla97C10G188730	Cucurbita moschata (Rifu)	cmowmbB819
Cla97C10G188730	Cucurbita moschata (Rifu)	cmowmbB824
Cla97C10G188730	Bottle gourd (USVL1VR-Ls)	lsiwmbB042
Cla97C10G188730	Watermelon (97103) v1	wmwmbB052