Cla97C10G188730.1 (mRNA) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C10G188730.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	leucine-rich repeat extensin-like protein 5
Location	Cla97Chr10 : 4830026 .. 4830631 (+)
Sequence length	606

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAAATTTGCTCTGTTTACTGTTCTGGTTTTGCTTGCGCCATTCACCGGCGTCGTTTTCGGTTACGATTCGCCGGCCGCCGCTCCAAAACCCACTAAAACAGCTCATTCTCCATCTCCGGCGCATTCTCCTGCGGTTTCGCCGCCGAGTCACTCGGCATCTCCGTCGAAGTCTCCTACTGTTTCTCCACCGGTGACAACTCCGGCTAGTTCTCCGGCATTGGCTACCCCACCATCTGTAGCGCCCCCGAAGGCTCCGGCTTCGGCGCCGGTTTCTTCGCCGGCGGCAAGTCCGGTAGGGAGTGAAAATTCGCCGATTTCGTCCCCGCCGTCTCCTCCGTCTTTCGATGCTTCTCCGGTGGCTACGCCGGTTGGGGCTCCAGTGGAACCAGAAATTCCTGCAAATCCGATCTCGGGAGGGTCTCCGGTGGGGACGCCGTCGATATTCCCGTCGAGTAGCAGCCCGCCAATGTCGACTCCGGCGAGCCTAGCACCGGAAACGGCGGAGAGGCCTGGAAACCACGCGTCGGCGCTAGGGAAGTACAATATCGGGGTGGAGGTTATTTTAAGTGGGCTTTCTATTTGGGCCGCTTGGGCCTTTTGA

mRNA sequence

ATGGACAAATTTGCTCTGTTTACTGTTCTGGTTTTGCTTGCGCCATTCACCGGCGTCGTTTTCGGTTACGATTCGCCGGCCGCCGCTCCAAAACCCACTAAAACAGCTCATTCTCCATCTCCGGCGCATTCTCCTGCGGTTTCGCCGCCGAGTCACTCGGCATCTCCGTCGAAGTCTCCTACTGTTTCTCCACCGGTGACAACTCCGGCTAGTTCTCCGGCATTGGCTACCCCACCATCTGTAGCGCCCCCGAAGGCTCCGGCTTCGGCGCCGGTTTCTTCGCCGGCGGCAAGTCCGGTAGGGAGTGAAAATTCGCCGATTTCGTCCCCGCCGTCTCCTCCGTCTTTCGATGCTTCTCCGGTGGCTACGCCGGTTGGGGCTCCAGTGGAACCAGAAATTCCTGCAAATCCGATCTCGGGAGGGTCTCCGGTGGGGACGCCGTCGATATTCCCGTCGAGTAGCAGCCCGCCAATGTCGACTCCGGCGAGCCTAGCACCGGAAACGGCGGAGAGGCCTGGAAACCACGCGTCGGCGCTAGGGAAGTACAATATCGGGGTGGAGGTTATTTTAAGTGGGCTTTCTATTTGGGCCGCTTGGGCCTTTTGA

Coding sequence (CDS)

ATGGACAAATTTGCTCTGTTTACTGTTCTGGTTTTGCTTGCGCCATTCACCGGCGTCGTTTTCGGTTACGATTCGCCGGCCGCCGCTCCAAAACCCACTAAAACAGCTCATTCTCCATCTCCGGCGCATTCTCCTGCGGTTTCGCCGCCGAGTCACTCGGCATCTCCGTCGAAGTCTCCTACTGTTTCTCCACCGGTGACAACTCCGGCTAGTTCTCCGGCATTGGCTACCCCACCATCTGTAGCGCCCCCGAAGGCTCCGGCTTCGGCGCCGGTTTCTTCGCCGGCGGCAAGTCCGGTAGGGAGTGAAAATTCGCCGATTTCGTCCCCGCCGTCTCCTCCGTCTTTCGATGCTTCTCCGGTGGCTACGCCGGTTGGGGCTCCAGTGGAACCAGAAATTCCTGCAAATCCGATCTCGGGAGGGTCTCCGGTGGGGACGCCGTCGATATTCCCGTCGAGTAGCAGCCCGCCAATGTCGACTCCGGCGAGCCTAGCACCGGAAACGGCGGAGAGGCCTGGAAACCACGCGTCGGCGCTAGGGAAGTACAATATCGGGGTGGAGGTTATTTTAAGTGGGCTTTCTATTTGGGCCGCTTGGGCCTTTTGA

Protein sequence

MDKFALFTVLVLLAPFTGVVFGYDSPAAAPKPTKTAHSPSPAHSPAVSPPSHSASPSKSPTVSPPVTTPASSPALATPPSVAPPKAPASAPVSSPAASPVGSENSPISSPPSPPSFDASPVATPVGAPVEPEIPANPISGGSPVGTPSIFPSSSSPPMSTPASLAPETAERPGNHASALGKYNIGVEVILSGLSIWAAWAF

Homology

[Close]

BLAST of Cla97C10G188730.1 vs. NCBI nr
Match: XP_022932347.1 (gibberellin-regulated protein 14-like [Cucurbita moschata])

HSP 1 Score: 83.2 bits (204), Expect = 1.1e-12
Identity = 187/201 (93.03%), Postives = 190/201 (94.53%), Query Frame = 0


Query: 1   MDKFALFTVLVLLAPFTGVVFGYDSPAAAPKPTKTAHSPSXXXXXXXXXXXXXXXXXXXX 60
           M+KFALFTVL+L + FT VV GYDSPAAAPKPTKTAHSPSXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MEKFALFTVLILFSAFTAVVLGYDSPAAAPKPTKTAHSPSXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAPETAERPGNHASALG 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAPETAE PG  ASA G
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAPETAELPGKDASASG 180

Query: 181 KYNIGVEVILSGLSIWAAWAF 202
           KY IG EVILSGLSIWA WAF
Sbjct: 181 KYRIGAEVILSGLSIWAVWAF 201

[Close]

BLAST of Cla97C10G188730.1 vs. NCBI nr
Match: XP_023552940.1 (gibberellin-regulated protein 14-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 78.6 bits (192), Expect = 2.7e-11
Identity = 154/201 (76.62%), Postives = 158/201 (78.61%), Query Frame = 0


Query: 1   MDKFALFTVLVLLAPFTGVVFGYDSPAAAPKPTKTAHSPSXXXXXXXXXXXXXXXXXXXX 60
           M+KF LFTVL+L + FT VVFGYDSPAAAPKPTKTAHSPS    XXXXXXXXXXXXXXXX
Sbjct: 1   MEKFPLFTVLILFSAFTAVVFGYDSPAAAPKPTKTAHSPS----XXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAPETAERPGNHASALG 180
           XXXXXXXXXXXXXXX                            LAPETAE PG  ASA G
Sbjct: 121 XXXXXXXXXXXXXXXNPITGGTPVETPSIFPSSSSPPMSTPASLAPETAELPGKDASASG 180

Query: 181 KYNIGVEVILSGLSIWAAWAF 202
           KY IG EVILSGLS+WA WAF
Sbjct: 181 KYRIGAEVILSGLSLWAVWAF 197

[Close]

BLAST of Cla97C10G188730.1 vs. NCBI nr
Match: XP_011652729.1 (PREDICTED: extensin-like [Cucumis sativus] >KGN56020.1 Lipid binding protein [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 1.2e-09
Identity = 35/38 (92.11%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 164 LAPETAERPGNHASALGKYNIGVEVILSGLSIWAAWAF 202
           LAPETAERPGN ASA GKY IGVEVILSGLSIWAAWAF
Sbjct: 155 LAPETAERPGNDASASGKYKIGVEVILSGLSIWAAWAF 192

[Close]

BLAST of Cla97C10G188730.1 vs. NCBI nr
Match: XP_016900598.1 (PREDICTED: leucine-rich repeat extensin-like protein 5 [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 5.7e-09
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 164 LAPETAERPGNHASALGKYNIGVEVILSGLSIWAAWAF 202
           LAPETAERPGN ASA G+Y IGVEV+LSGLSIWAAWAF
Sbjct: 89  LAPETAERPGNDASASGRYKIGVEVMLSGLSIWAAWAF 126

[Close]

BLAST of Cla97C10G188730.1 vs. NCBI nr
Match: XP_023007601.1 (gibberellin-regulated protein 14-like [Cucurbita maxima])

HSP 1 Score: 63.5 bits (153), Expect = 9.2e-07
Identity = 30/38 (78.95%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 164 LAPETAERPGNHASALGKYNIGVEVILSGLSIWAAWAF 202
           LAPETAE PG  AS  GKY IG EVILSGLSIWA WAF
Sbjct: 164 LAPETAELPGKDASTSGKYRIGAEVILSGLSIWAVWAF 201

[Close]

BLAST of Cla97C10G188730.1 vs. TrEMBL
Match: tr|A0A0A0L269|A0A0A0L269_CUCSA (Lipid binding protein OS=Cucumis sativus OX=3659 GN=Csa_3G047810 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 7.6e-10
Identity = 35/38 (92.11%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 164 LAPETAERPGNHASALGKYNIGVEVILSGLSIWAAWAF 202
           LAPETAERPGN ASA GKY IGVEVILSGLSIWAAWAF
Sbjct: 155 LAPETAERPGNDASASGKYKIGVEVILSGLSIWAAWAF 192

[Close]

BLAST of Cla97C10G188730.1 vs. TrEMBL
Match: tr|A0A1S4DX95|A0A1S4DX95_CUCME (leucine-rich repeat extensin-like protein 5 OS=Cucumis melo OX=3656 GN=LOC107990970 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.8e-09
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 164 LAPETAERPGNHASALGKYNIGVEVILSGLSIWAAWAF 202
           LAPETAERPGN ASA G+Y IGVEV+LSGLSIWAAWAF
Sbjct: 89  LAPETAERPGNDASASGRYKIGVEVMLSGLSIWAAWAF 126

The following BLAST results are available for this feature:

BLAST of Cla97C10G188730.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932347.1	1.1e-12	93.03	gibberellin-regulated protein 14-like [Cucurbita moschata]	[more]
XP_023552940.1	2.7e-11	76.62	gibberellin-regulated protein 14-like [Cucurbita pepo subsp. pepo]	[more]
XP_011652729.1	1.2e-09	92.11	PREDICTED: extensin-like [Cucumis sativus] >KGN56020.1 Lipid binding protein [Cu...	[more]
XP_016900598.1	5.7e-09	86.84	PREDICTED: leucine-rich repeat extensin-like protein 5 [Cucumis melo]	[more]
XP_023007601.1	9.2e-07	78.95	gibberellin-regulated protein 14-like [Cucurbita maxima]	[more]

BLAST of Cla97C10G188730.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L269\|A0A0A0L269_CUCSA	7.6e-10	92.11	Lipid binding protein OS=Cucumis sativus OX=3659 GN=Csa_3G047810 PE=4 SV=1	[more]
tr\|A0A1S4DX95\|A0A1S4DX95_CUCME	3.8e-09	86.84	leucine-rich repeat extensin-like protein 5 OS=Cucumis melo OX=3656 GN=LOC107990...	[more]

BLAST of Cla97C10G188730.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C10G188730.1 vs. TAIR10


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla97C10G188730	Cla97C10G188730	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C10G188730.1.exon.1	Cla97C10G188730.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C10G188730.1.CDS.1	Cla97C10G188730.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla97C10G188730.1	Cla97C10G188730.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..176
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 141..162