CsaV3_3G004090.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G004090.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionleucine-rich repeat extensin-like protein 5
Locationchr3 : 3480099 .. 3481581 (+)
Sequence length579
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTCACGAGCCTCCCTTTCTTTTTTCTTTTTTCTTTTTCTTTTATAATAATAATCAAATGTGACCGTCTCTACCAGTTTTCCTCTGCCATCTAACGACTACTTTACCCGTGCTAGCCGGTCCCATCTCCCCCAACGGTCACCTTTTCCTTTCCGTCCTCTTTCTTCACACCTATTAACCTTCACTATATATATATATATCTTCACCATTCACTAACAAATTCATTTCCAATTCCGGTCCCATTTTTGACTTCATATTTCGGACCGCCGGTCTAAAACACAGAGAGAAATCCCCCTCCCCCCCTCAATAGCATGGCCAAGTTTGCTTTGTTTATTACTCTTCTCTTTTTGTTTTCGCCATTTATTGGCCTCGTTTTCGCTAACGATTCCCCTGCCGCCTCCCCAAAACCTCCTAAAACGCTTCATTCTCCTTCTCCGGCGCATTCTCCGGTTGTTTCGCCGCCGAGTCACACTGTATCTCCGTCTAAATCTCCGGCTGCTTCTCCACCGGTCGTAACTCCGGTAATTTCTCCGGCATTGGCTACCCCACCATCTGTAGCGCCCTCGAAGGCTCCGGCAGCGGTACCTATTTCTTCGCCGAGTGAAAATTCTCCGCTTTCGTCGCCGCCGTCTCCTCTCCCTTTCGATGCTTCTCCGGTTGGGGCTCCAGTGGAACCAGAAATCCCGGCAAATCCGATTTCTGGAGGGTCTCCCGTGGGGACGCCGTCGATATTTCCGTCGAGCAGTAGCCCACCGATGGCTACTCCGACAAGCTTAGCACCGGAAACGGCGGAGAGGCCTGGAAACGACGCGTCGGCGTCAGGAAAGTACAAGATCGGGGTGGAGGTTATTTTGAGTGGGCTTTCTATTTGGGCTGCTTGGGCCTTTTGAAATTAGGCCCATGTGTTTAAATTTTGGTGGTAGGTGTTTTTGAGATTATATTGTATTCTTTTTTGACTCAACGTGTGGGGTTCTTCTTTTTATTCAATTTTCTTATATGAATATAATGTTTTTGGTATATTTAGGGTTATTAAATTAATAATAGTTAAACTAAATTGCTTGAAATATTCAATCGATTGAAGTAGAAACAAAATTTCCTCTATCCTAAACTAGGGTTAGGGTGGTAGTTATAGTTATACTTCAAACTTGCCTAATAAGTTTAATGATTCAAACTTACCTAATAGGTGGAATGCATAGTGACAGAGTTATACCTAAAATATTATTGAAAAAGAGAACATAATTGATAAAAGGAAATAAAAATGGATGATGAATATTTATAGTATGGGTTGAGGAGAAAATATCTAGAAACACCATGGGCATACTGTTTCGTTGAGAATGAGTGAGTAGTTGAGAGAATAAGGCAAAAAAATGGTACTCGTGGATTGAGATGCGGCCAATCATCCAAATTATACACATCACCTTTCATAGATACTTTCTCTTCTTATCCATCTTTCTGGGATAACTCATGCCAACTAAGATACGACG

mRNA sequence

ATGGCCAAGTTTGCTTTGTTTATTACTCTTCTCTTTTTGTTTTCGCCATTTATTGGCCTCGTTTTCGCTAACGATTCCCCTGCCGCCTCCCCAAAACCTCCTAAAACGCTTCATTCTCCTTCTCCGGCGCATTCTCCGGTTGTTTCGCCGCCGAGTCACACTGTATCTCCGTCTAAATCTCCGGCTGCTTCTCCACCGGTCGTAACTCCGGTAATTTCTCCGGCATTGGCTACCCCACCATCTGTAGCGCCCTCGAAGGCTCCGGCAGCGGTACCTATTTCTTCGCCGAGTGAAAATTCTCCGCTTTCGTCGCCGCCGTCTCCTCTCCCTTTCGATGCTTCTCCGGTTGGGGCTCCAGTGGAACCAGAAATCCCGGCAAATCCGATTTCTGGAGGGTCTCCCGTGGGGACGCCGTCGATATTTCCGTCGAGCAGTAGCCCACCGATGGCTACTCCGACAAGCTTAGCACCGGAAACGGCGGAGAGGCCTGGAAACGACGCGTCGGCGTCAGGAAAGTACAAGATCGGGGTGGAGGTTATTTTGAGTGGGCTTTCTATTTGGGCTGCTTGGGCCTTTTGA

Coding sequence (CDS)

ATGGCCAAGTTTGCTTTGTTTATTACTCTTCTCTTTTTGTTTTCGCCATTTATTGGCCTCGTTTTCGCTAACGATTCCCCTGCCGCCTCCCCAAAACCTCCTAAAACGCTTCATTCTCCTTCTCCGGCGCATTCTCCGGTTGTTTCGCCGCCGAGTCACACTGTATCTCCGTCTAAATCTCCGGCTGCTTCTCCACCGGTCGTAACTCCGGTAATTTCTCCGGCATTGGCTACCCCACCATCTGTAGCGCCCTCGAAGGCTCCGGCAGCGGTACCTATTTCTTCGCCGAGTGAAAATTCTCCGCTTTCGTCGCCGCCGTCTCCTCTCCCTTTCGATGCTTCTCCGGTTGGGGCTCCAGTGGAACCAGAAATCCCGGCAAATCCGATTTCTGGAGGGTCTCCCGTGGGGACGCCGTCGATATTTCCGTCGAGCAGTAGCCCACCGATGGCTACTCCGACAAGCTTAGCACCGGAAACGGCGGAGAGGCCTGGAAACGACGCGTCGGCGTCAGGAAAGTACAAGATCGGGGTGGAGGTTATTTTGAGTGGGCTTTCTATTTGGGCTGCTTGGGCCTTTTGA

Protein sequence

MAKFALFITLLFLFSPFIGLVFANDSPAASPKPPKTLHSPSPAHSPVVSPPSHTVSPSKSPAASPPVVTPVISPALATPPSVAPSKAPAAVPISSPSENSPLSSPPSPLPFDASPVGAPVEPEIPANPISGGSPVGTPSIFPSSSSPPMATPTSLAPETAERPGNDASASGKYKIGVEVILSGLSIWAAWAF
Homology
[Close]
BLAST of CsaV3_3G004090.1 vs. NCBI nr
Match: XP_011652729.1 (PREDICTED: extensin-like [Cucumis sativus] >KGN56020.1 Lipid binding protein [Cucumis sativus])

HSP 1 Score: 186.4 bits (472), Expect = 9.0e-44
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0 

Query: 1   MAKFALFITLLFLFSPFIGLVFANDSPAASPKPPKTLHSPSPXXXXXXXXXXXXXXXXXX 60
           MAKFALFITLLFLFSPFIGLVFANDSPAASPKPPKTLHSPSPXXXXXXXXXXXXXXXXXX
Sbjct: 1   MAKFALFITLLFLFSPFIGLVFANDSPAASPKPPKTLHSPSPXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 EPEIPANPISGGSPVGTPSIFPSSSSXXMATPTSLAPETAERPGNDASASGKYKIGVEVI 180
           EPEIPANPISGGSPVGTPSIFPSSSSXXMATPTSLAPETAERPGNDASASGKYKIGVEVI
Sbjct: 121 EPEIPANPISGGSPVGTPSIFPSSSSXXMATPTSLAPETAERPGNDASASGKYKIGVEVI 180

Query: 181 LSGLSIWAAWAF 193
           LSGLSIWAAWAF
Sbjct: 181 LSGLSIWAAWAF 192

[Close]
BLAST of CsaV3_3G004090.1 vs. NCBI nr
Match: XP_016900598.1 (PREDICTED: leucine-rich repeat extensin-like protein 5 [Cucumis melo])

HSP 1 Score: 134.0 bits (336), Expect = 5.3e-28
Identity = 67/72 (93.06%), Postives = 70/72 (97.22%), Query Frame = 0 

Query: 121 EPEIPANPISGGSPVGTPSIFPSSSSXXMATPTSLAPETAERPGNDASASGKYKIGVEVI 180
           EPEIPANPISGGSPVGTPSIFPSSSS  MATPT+LAPETAERPGNDASASG+YKIGVEV+
Sbjct: 55  EPEIPANPISGGSPVGTPSIFPSSSSPPMATPTNLAPETAERPGNDASASGRYKIGVEVM 114

Query: 181 LSGLSIWAAWAF 193
           LSGLSIWAAWAF
Sbjct: 115 LSGLSIWAAWAF 126

[Close]
BLAST of CsaV3_3G004090.1 vs. NCBI nr
Match: XP_023552940.1 (gibberellin-regulated protein 14-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 111.3 bits (277), Expect = 3.7e-21
Identity = 158/198 (79.80%), Postives = 166/198 (83.84%), Query Frame = 0 

Query: 1   MAKFALFITLLFLFSPFIGLVFANDSPAASPKPPKTLHSPS------PXXXXXXXXXXXX 60
           M KF LF T+L LFS F  +VF  DSPAA+PKP KT HSPS       XXXXXXXXXXXX
Sbjct: 1   MEKFPLF-TVLILFSAFTAVVFGYDSPAAAPKPTKTAHSPSXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXEPEIPANPISGGSPVGTPSIFPSSSSXXMATPTSLAPETAERPGNDASASGKYK 180
           XXXXXX      NPI+GG+PV TPSIFPSSSS  M+TP SLAPETAE PG DASASGKY+
Sbjct: 121 XXXXXXXXXXXXNPITGGTPVETPSIFPSSSSPPMSTPASLAPETAELPGKDASASGKYR 180

Query: 181 IGVEVILSGLSIWAAWAF 193
           IG EVILSGLS+WA WAF
Sbjct: 181 IGAEVILSGLSLWAVWAF 197

[Close]
BLAST of CsaV3_3G004090.1 vs. NCBI nr
Match: XP_022158207.1 (classical arabinogalactan protein 4-like [Momordica charantia])

HSP 1 Score: 70.9 bits (172), Expect = 5.5e-09
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 154 SLAPETAERPGNDASAS-GKYKIGVEVILSGLSIWAAWAF 193
           SLAPETAERPGNDASAS  KYKIG EVILSG+SIWAAWAF
Sbjct: 166 SLAPETAERPGNDASASEWKYKIGAEVILSGISIWAAWAF 205

[Close]
BLAST of CsaV3_3G004090.1 vs. NCBI nr
Match: XP_022932347.1 (gibberellin-regulated protein 14-like [Cucurbita moschata])

HSP 1 Score: 70.1 bits (170), Expect = 9.4e-09
Identity = 33/38 (86.84%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 155 LAPETAERPGNDASASGKYKIGVEVILSGLSIWAAWAF 193
           LAPETAE PG DASASGKY+IG EVILSGLSIWA WAF
Sbjct: 164 LAPETAELPGKDASASGKYRIGAEVILSGLSIWAVWAF 201

[Close]
BLAST of CsaV3_3G004090.1 vs. TrEMBL
Match: tr|A0A0A0L269|A0A0A0L269_CUCSA (Lipid binding protein OS=Cucumis sativus OX=3659 GN=Csa_3G047810 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 5.9e-44
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0 

Query: 1   MAKFALFITLLFLFSPFIGLVFANDSPAASPKPPKTLHSPSPXXXXXXXXXXXXXXXXXX 60
           MAKFALFITLLFLFSPFIGLVFANDSPAASPKPPKTLHSPSPXXXXXXXXXXXXXXXXXX
Sbjct: 1   MAKFALFITLLFLFSPFIGLVFANDSPAASPKPPKTLHSPSPXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 EPEIPANPISGGSPVGTPSIFPSSSSXXMATPTSLAPETAERPGNDASASGKYKIGVEVI 180
           EPEIPANPISGGSPVGTPSIFPSSSSXXMATPTSLAPETAERPGNDASASGKYKIGVEVI
Sbjct: 121 EPEIPANPISGGSPVGTPSIFPSSSSXXMATPTSLAPETAERPGNDASASGKYKIGVEVI 180

Query: 181 LSGLSIWAAWAF 193
           LSGLSIWAAWAF
Sbjct: 181 LSGLSIWAAWAF 192

[Close]
BLAST of CsaV3_3G004090.1 vs. TrEMBL
Match: tr|A0A1S4DX95|A0A1S4DX95_CUCME (leucine-rich repeat extensin-like protein 5 OS=Cucumis melo OX=3656 GN=LOC107990970 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.5e-28
Identity = 67/72 (93.06%), Postives = 70/72 (97.22%), Query Frame = 0 

Query: 121 EPEIPANPISGGSPVGTPSIFPSSSSXXMATPTSLAPETAERPGNDASASGKYKIGVEVI 180
           EPEIPANPISGGSPVGTPSIFPSSSS  MATPT+LAPETAERPGNDASASG+YKIGVEV+
Sbjct: 55  EPEIPANPISGGSPVGTPSIFPSSSSPPMATPTNLAPETAERPGNDASASGRYKIGVEVM 114

Query: 181 LSGLSIWAAWAF 193
           LSGLSIWAAWAF
Sbjct: 115 LSGLSIWAAWAF 126

The following BLAST results are available for this feature:
BLAST of CsaV3_3G004090.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011652729.19.0e-44100.00PREDICTED: extensin-like [Cucumis sativus] >KGN56020.1 Lipid binding protein [Cu... [more]
XP_016900598.15.3e-2893.06PREDICTED: leucine-rich repeat extensin-like protein 5 [Cucumis melo][more]
XP_023552940.13.7e-2179.80gibberellin-regulated protein 14-like [Cucurbita pepo subsp. pepo][more]
XP_022158207.15.5e-0990.00classical arabinogalactan protein 4-like [Momordica charantia][more]
XP_022932347.19.4e-0986.84gibberellin-regulated protein 14-like [Cucurbita moschata][more]
BLAST of CsaV3_3G004090.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G004090.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G004090.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L269|A0A0A0L269_CUCSA5.9e-44100.00Lipid binding protein OS=Cucumis sativus OX=3659 GN=Csa_3G047810 PE=4 SV=1[more]
tr|A0A1S4DX95|A0A1S4DX95_CUCME3.5e-2893.06leucine-rich repeat extensin-like protein 5 OS=Cucumis melo OX=3656 GN=LOC107990... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_3G004090CsaV3_3G004090gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G004090.1.exon1CsaV3_3G004090.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G004090.1.cds1CsaV3_3G004090.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_3G004090.1CsaV3_3G004090.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 99..115
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 132..153
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..170