CsaV3_3G001120 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AACAAAAATTCAAGTAAAAATCAAAGAAGTATAGTCGATAAACTATTATGAGTCACTCATCACCTAGTTGGGTAAAAATATAACATCTTGAAATCAAGTAAAAACTAAGATCCACATTTAGCATATTACACACCATATTTTAATTATACCAAAATAGTATTTTAAAACTATTCTAAAATGGTATTTTGGGGCAATTCGTTAAGTTTGAGAAGGTGGAACCGACCGGAATCAGATCCTCACCTTGCCGCCATCGTCAACGCCACGTTCAAGCACTCTCTCCTTCTCTCTCTCTCCCTTCCTTTGCGCCAAACCCTTTTTCGGGGACCGCAAAAGGGCTGATTTTTCTGCAACAAACACTCCCTCGCATGGTGGGATCGACTACTCTTAATCACCTTATTATGCAATCGTCAGTGCTTTCCACTTATCATTACCAATCCATTATTCCATCATTTTCCGTTTACTCATCTTCTTTTTCCATTTCCACTTAATTTTTATCATCACAATTACGAAATCTGTTTCCTCTTTTTTGTTTCTACTTTTTCCATAGCTGCCGTGTTATTTGAGCTGCTCGATTTTATTTTGTTCTACTTTTGGTTGTTTTGTTTCACCTGTGGATCTTTTTTTTTTTTTTTTCGTTTTTATTCATCATTGCGATATTGGTTGTTGCTTTCAATTGTTCGATTTTGACCAAAGAAGTGGAAGACCAACGATCTTTTTTTAAGAAGAATCGATTTCTAAAGCGTTTCTTATTTTGCCTTCAAACAATAGGTTTCTTTGTCTTCTTCCTAAATTACTAGCTTCAATAATGCTCTTCTTTTTACGCTCTGTGTTCTTGCTGTGGTTTGCGAGAATTATTGGTACTTTTGCTTGTTTTCACGAAGCATTTCACGAATTATTCAGAAGAGTTGAGGAAGTTCCTGTGTTGATTTACTGAATGGAAGTGTTTTTTTTGGGGGGGAAAACAGAATTTGGCTTAATGGTAGAAGAGGAGAAGTTATCATAAAAGTGAAGATCACGGAGGAATAGAGTGGTAAAAGCGATTTGAAGATATGGGATCTTTTAAGGGCCATGTTCTTCCAGGAACGCTGTTTCTTCTGGTTGGTGTTTGGCACGTGTGGAGTGCTCTGCTTCGGTACGTGTTAAATCCTAGCTTGTTTCGTGTTCGTGTGTGGAATCCTATGCCTGGCTTCGACGGAAAACTCAAATACTTAGAGCTTTATGTTATTGTTATTGGCGGTTTCATTGATTTGTGTATTGAGCTTTTGTATTCAACCCATCTCAAGTTCTTCGTTAATGGAGTTTTGAACCCTTCACATATGAACAACTTTGAACATTCGGGGATGCTTCTCATGTTCTTCATTTTTGGAGTCATCGCTTTGCTCTCTGAAAAATCCAGGTAATTCATTCTTGTTTCATGAACAAATCATTTGAGAGTGTTAACTTTTTCATTACTTTTGTTTAGATCAGTTGGGTTTAGTTAATTCAGTTACTTTGCTTGAGTTAGTTTTGAGAAGTATTTTTGAAAACGTGCATAACAAATTAAACAGACTATAACTTAGTTTTTGAGTTGAGTGGTGGGTTTAATAGAAATATCAAATTGATGGTGGAAAGTATGAGGATTTTCTTTTAAGGAGGAGTTTAAGCCGGCAAGGACGAGTAAACATGGCGTGTATAGATGTATCTTTGCTGAATTGGTTGAATAAAAGTACACGAACTTTTGCTCTTGATCTTGTAGTAGTTTGTTTACATCAGGAAAGTGAATAAGTGATCATAGATTCAAGATGAAGATATCATGGTTTAGGTCTGTGAAGGATCAGTGTAGCTTTCGTTCTGTTTTCATACAATCAACTTCACATATTAGTAAAGTAACGCATGCATGTGGAGCAATTGATATGAAGATATAGCCTACAGATCATATAAGATGGAAGTTCTGGGATGAGAGCAATAGCAATTTCTATCACATCATATTTTAAGTTGTGACCGTTCCCAAACCTCGTTGGAACGACACGTTTTTCGTCCCTGGTTTCTAGTATTTTTCAGTTCATAAGAGATTATCATCCAGAATTTGAAGTGAAATGTGGACAAATAAATGGTTATACTGTATAGAAGGGGACATGTCTAATTTGCATAATCTTTTAATCTAGTATTCAAATATTGAATTGAGTTGTTAACTATCTGTTTCTAAATTTATGTGCAGTTTATCTTTTACTGTTTTAAATTTTAATTACTAGTTTTTTTCTTAAAAAGAGCTGATTATTCAACTCTCACCTCTTTCTGTTTAGATTTGTTCGTCTACCAGACGAAGCGCTTTGTCTGATTGCTGCCATGGCATTCTGCGCCGAATATCTGTTGTTTTACTTTCATTCAACTACTCATAAAGGCCTCGAGGGTTACTACCATATTCTCCTTGTCCTCTTGATAGGGCTCTGCATTTTGTCGACGGTTGCTGGAGCTATTTTACCTACCAGCTTTTCAGTTGACGTGTGCAGCGGTATCGCCATAACGCTCCAGGGTCTTTGGTTTTATCAAACAGCCTTCACTTTGTATGGTCCAATGATGCCTGATGGTTGTGAGCTAAAGGATGATATGATGGTCATGTGTTATTCAAAAGATAGTGAGGTTAGAGGTGAACTCCTTGCAAATTTCCAGCTCTTTTCTATGGTCGTTGGAGTCCTTGGTGGGGTCATCGGAGTTTACTGGTTTGCAGCATCGAAGTACGGGCGATCCGACCTCGGAAGTTCGAATGCCATCCAAGACTAGATTGTTTCCGGGTATGTCTTGCATCAAAATTTTATCTCTTTGTAGGATTCTTTAGGCAACTTCTAGGTTTGTTTCTTACATTCTAAAAAGTAAAACTTCTTTAGCTTCATTTAGAAATCCATGCCACGATTATGATTTCGAGTGCTGCTTAACATTCTATTTTTTGTTATTATTTTTAAAACTTGAATGCTTTGTGGGTAAACAATTCCAAAGTGCATTTGGCTCGAGTGCTTTGACTTAAAAGCACTTTAAAAATTTTCTTAAGAAGGTAAAATCAACCATCATATGATTTTTTTATCGAACGCTTTCTATTTATTTGTTTATCATTAAAATACTTTTGACTACAATATTAAAATACTTTGATTACAATATTTTGATAGAGTGATTTTAAAAATGATTGAAATCATTTTCTCAAAAGTTCAACATTCAAAATCAATTTAATGAATAATTTTACACTTTAAACAAATTTTTTATACTATTAAAATTGATTTAGAATGACTAAAAACATTTTCCTATTCATTTTAAAAATGACAAAGATGATTGTAACGTCTAAGACGTCCCATGATCTCTCACACACACGTATATTTTCTGATTAAACTCGTTCAAGCTATTAATTTTTCTTTTCAATTTTAATGTAATTAAAAGTTTTAGACTGAAGAATGATTCATTGGAAATTTTTAAAAGAAACTAAAAAGAAAAAGGGAAAAGGGAAATGAAGAGATGGAGAAGAAAAGTGATGTTGTATTTGTGTGTCCTTTTACAGGTCACTTTGTAATATTTTGAGGCAAATAGTTCTTTCTGCTCTCCAATGACTTTGCAGTATATTGTTGCTTAAGTTCTTTTTGTGTAATCATGTGTCAATGGCAAACATAGTCTATGGTTTTATTCTTTTGGGGACTGATTGGAAACTATAGTTTCTTTTCGAAATTTTCAAATAACATTTATCATAATAGTGACATTAAAAAATATTTGAGATGCTCATCATGAGCATAGCTAAGGAGCATATTATATGTTAAGTTGAAGTGGAAAAAGGTCCTAATCTCAATTCTATTTCGTTGGATTGAAAAGGGCAAAAAAGACATTGCGGGTCCATGAAATTCAAATTTTCTTTTATGAT ATGGGATCTTTTAAGGGCCATGTTCTTCCAGGAACGCTGTTTCTTCTGGTTGGTGTTTGGCACGTGTGGAGTGCTCTGCTTCGGTACGTGTTAAATCCTAGCTTGTTTCGTGTTCGTGTGTGGAATCCTATGCCTGGCTTCGACGGAAAACTCAAATACTTAGAGCTTTATGTTATTGTTATTGGCGGTTTCATTGATTTGTGTATTGAGCTTTTGTATTCAACCCATCTCAAGTTCTTCGTTAATGGAGTTTTGAACCCTTCACATATGAACAACTTTGAACATTCGGGGATGCTTCTCATGTTCTTCATTTTTGGAGTCATCGCTTTGCTCTCTGAAAAATCCAGATTTGTTCGTCTACCAGACGAAGCGCTTTGTCTGATTGCTGCCATGGCATTCTGCGCCGAATATCTGTTGTTTTACTTTCATTCAACTACTCATAAAGGCCTCGAGGGTTACTACCATATTCTCCTTGTCCTCTTGATAGGGCTCTGCATTTTGTCGACGGTTGCTGGAGCTATTTTACCTACCAGCTTTTCAGTTGACGTGTGCAGCGGTATCGCCATAACGCTCCAGGGTCTTTGGTTTTATCAAACAGCCTTCACTTTGTATGGTCCAATGATGCCTGATGGTTGTGAGCTAAAGGATGATATGATGGTCATGTGTTATTCAAAAGATAGTGAGGTTAGAGGTGAACTCCTTGCAAATTTCCAGCTCTTTTCTATGGTCGTTGGAGTCCTTGGTGGGGTCATCGGAGTTTACTGGTTTGCAGCATCGAAGTACGGGCGATCCGACCTCGGAAGTTCGAATGCCATCCAAGACTAG ATGGGATCTTTTAAGGGCCATGTTCTTCCAGGAACGCTGTTTCTTCTGGTTGGTGTTTGGCACGTGTGGAGTGCTCTGCTTCGGTACGTGTTAAATCCTAGCTTGTTTCGTGTTCGTGTGTGGAATCCTATGCCTGGCTTCGACGGAAAACTCAAATACTTAGAGCTTTATGTTATTGTTATTGGCGGTTTCATTGATTTGTGTATTGAGCTTTTGTATTCAACCCATCTCAAGTTCTTCGTTAATGGAGTTTTGAACCCTTCACATATGAACAACTTTGAACATTCGGGGATGCTTCTCATGTTCTTCATTTTTGGAGTCATCGCTTTGCTCTCTGAAAAATCCAGATTTGTTCGTCTACCAGACGAAGCGCTTTGTCTGATTGCTGCCATGGCATTCTGCGCCGAATATCTGTTGTTTTACTTTCATTCAACTACTCATAAAGGCCTCGAGGGTTACTACCATATTCTCCTTGTCCTCTTGATAGGGCTCTGCATTTTGTCGACGGTTGCTGGAGCTATTTTACCTACCAGCTTTTCAGTTGACGTGTGCAGCGGTATCGCCATAACGCTCCAGGGTCTTTGGTTTTATCAAACAGCCTTCACTTTGTATGGTCCAATGATGCCTGATGGTTGTGAGCTAAAGGATGATATGATGGTCATGTGTTATTCAAAAGATAGTGAGGTTAGAGGTGAACTCCTTGCAAATTTCCAGCTCTTTTCTATGGTCGTTGGAGTCCTTGGTGGGGTCATCGGAGTTTACTGGTTTGCAGCATCGAAGTACGGGCGATCCGACCTCGGAAGTTCGAATGCCATCCAAGACTAG MGSFKGHVLPGTLFLLVGVWHVWSALLRYVLNPSLFRVRVWNPMPGFDGKLKYLELYVIVIGGFIDLCIELLYSTHLKFFVNGVLNPSHMNNFEHSGMLLMFFIFGVIALLSEKSRFVRLPDEALCLIAAMAFCAEYLLFYFHSTTHKGLEGYYHILLVLLIGLCILSTVAGAILPTSFSVDVCSGIAITLQGLWFYQTAFTLYGPMMPDGCELKDDMMVMCYSKDSEVRGELLANFQLFSMVVGVLGGVIGVYWFAASKYGRSDLGSSNAIQD
BLAST of CsaV3_3G001120 vs. NCBI nr
Match: XP_004146117.1 (PREDICTED: transmembrane protein 45B [Cucumis sativus] >XP_011650315.1 PREDICTED: transmembrane protein 45B [Cucumis sativus] >XP_011650316.1 PREDICTED: transmembrane protein 45B [Cucumis sativus] >KGN55698.1 hypothetical protein Csa_3G006600 [Cucumis sativus]) HSP 1 Score: 556.6 bits (1433), Expect = 4.7e-155 Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 0
BLAST of CsaV3_3G001120 vs. NCBI nr
Match: XP_008448600.1 (PREDICTED: transmembrane protein 45B [Cucumis melo] >XP_008448603.1 PREDICTED: transmembrane protein 45B [Cucumis melo] >XP_016900621.1 PREDICTED: transmembrane protein 45B [Cucumis melo]) HSP 1 Score: 547.0 bits (1408), Expect = 3.7e-152 Identity = 267/274 (97.45%), Postives = 272/274 (99.27%), Query Frame = 0
BLAST of CsaV3_3G001120 vs. NCBI nr
Match: XP_022923561.1 (transmembrane protein 45B-like [Cucurbita moschata] >XP_022923562.1 transmembrane protein 45B-like [Cucurbita moschata] >XP_022923563.1 transmembrane protein 45B-like [Cucurbita moschata]) HSP 1 Score: 524.2 bits (1349), Expect = 2.6e-145 Identity = 255/272 (93.75%), Postives = 266/272 (97.79%), Query Frame = 0
BLAST of CsaV3_3G001120 vs. NCBI nr
Match: XP_023553106.1 (transmembrane protein 45B-like [Cucurbita pepo subsp. pepo] >XP_023553107.1 transmembrane protein 45B-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 521.9 bits (1343), Expect = 1.3e-144 Identity = 254/272 (93.38%), Postives = 265/272 (97.43%), Query Frame = 0
BLAST of CsaV3_3G001120 vs. NCBI nr
Match: XP_022965299.1 (transmembrane protein 45B-like [Cucurbita maxima] >XP_022965300.1 transmembrane protein 45B-like [Cucurbita maxima] >XP_022965301.1 transmembrane protein 45B-like [Cucurbita maxima]) HSP 1 Score: 518.5 bits (1334), Expect = 1.4e-143 Identity = 252/272 (92.65%), Postives = 263/272 (96.69%), Query Frame = 0
BLAST of CsaV3_3G001120 vs. TAIR10
Match: AT1G32120.1 (FUNCTIONS IN: molecular_function unknown) HSP 1 Score: 414.1 bits (1063), Expect = 6.9e-116 Identity = 199/264 (75.38%), Postives = 231/264 (87.50%), Query Frame = 0
BLAST of CsaV3_3G001120 vs. TAIR10
Match: AT1G55240.1 (Family of unknown function (DUF716) ) HSP 1 Score: 165.2 bits (417), Expect = 5.5e-41 Identity = 93/271 (34.32%), Postives = 157/271 (57.93%), Query Frame = 0
BLAST of CsaV3_3G001120 vs. TAIR10
Match: AT1G55230.1 (Family of unknown function (DUF716) ) HSP 1 Score: 153.3 bits (386), Expect = 2.2e-37 Identity = 88/271 (32.47%), Postives = 145/271 (53.51%), Query Frame = 0
BLAST of CsaV3_3G001120 vs. TAIR10
Match: AT5G19870.1 (Family of unknown function (DUF716) ) HSP 1 Score: 135.2 bits (339), Expect = 6.1e-32 Identity = 83/269 (30.86%), Postives = 143/269 (53.16%), Query Frame = 0
BLAST of CsaV3_3G001120 vs. TAIR10
Match: AT1G49470.1 (Family of unknown function (DUF716) ) HSP 1 Score: 131.7 bits (330), Expect = 6.8e-31 Identity = 88/262 (33.59%), Postives = 127/262 (48.47%), Query Frame = 0
BLAST of CsaV3_3G001120 vs. Swiss-Prot
Match: sp|Q3T130|TM45B_BOVIN (Transmembrane protein 45B OS=Bos taurus OX=9913 GN=TMEM45B PE=2 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 4.0e-12 Identity = 60/211 (28.44%), Postives = 101/211 (47.87%), Query Frame = 0
BLAST of CsaV3_3G001120 vs. Swiss-Prot
Match: sp|Q6P0S3|TM45B_DANRE (Transmembrane protein 45B OS=Danio rerio OX=7955 GN=tmem45b PE=2 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 5.2e-12 Identity = 63/230 (27.39%), Postives = 102/230 (44.35%), Query Frame = 0
BLAST of CsaV3_3G001120 vs. Swiss-Prot
Match: sp|Q497B2|TM45B_RAT (Transmembrane protein 45B OS=Rattus norvegicus OX=10116 GN=Tmem45b PE=1 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 1.7e-10 Identity = 63/228 (27.63%), Postives = 101/228 (44.30%), Query Frame = 0
BLAST of CsaV3_3G001120 vs. Swiss-Prot
Match: sp|Q9NWC5|TM45A_HUMAN (Transmembrane protein 45A OS=Homo sapiens OX=9606 GN=TMEM45A PE=2 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 3.7e-10 Identity = 57/218 (26.15%), Postives = 96/218 (44.04%), Query Frame = 0
BLAST of CsaV3_3G001120 vs. Swiss-Prot
Match: sp|Q96B21|TM45B_HUMAN (Transmembrane protein 45B OS=Homo sapiens OX=9606 GN=TMEM45B PE=1 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 3.7e-10 Identity = 64/227 (28.19%), Postives = 106/227 (46.70%), Query Frame = 0
BLAST of CsaV3_3G001120 vs. TrEMBL
Match: tr|A0A0A0L1Q5|A0A0A0L1Q5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006600 PE=4 SV=1) HSP 1 Score: 556.6 bits (1433), Expect = 3.1e-155 Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 0
BLAST of CsaV3_3G001120 vs. TrEMBL
Match: tr|A0A1S4DXB2|A0A1S4DXB2_CUCME (transmembrane protein 45B OS=Cucumis melo OX=3656 GN=LOC103490728 PE=4 SV=1) HSP 1 Score: 547.0 bits (1408), Expect = 2.5e-152 Identity = 267/274 (97.45%), Postives = 272/274 (99.27%), Query Frame = 0
BLAST of CsaV3_3G001120 vs. TrEMBL
Match: tr|A0A2I4DKH6|A0A2I4DKH6_9ROSI (transmembrane protein 45B-like OS=Juglans regia OX=51240 GN=LOC108981038 PE=4 SV=1) HSP 1 Score: 460.7 bits (1184), Expect = 2.3e-126 Identity = 219/274 (79.93%), Postives = 249/274 (90.88%), Query Frame = 0
BLAST of CsaV3_3G001120 vs. TrEMBL
Match: tr|A0A061G629|A0A061G629_THECC (C globular stage isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_016657 PE=4 SV=1) HSP 1 Score: 453.4 bits (1165), Expect = 3.7e-124 Identity = 217/274 (79.20%), Postives = 242/274 (88.32%), Query Frame = 0
BLAST of CsaV3_3G001120 vs. TrEMBL
Match: tr|A0A2I4H7Q8|A0A2I4H7Q8_9ROSI (transmembrane protein 45B-like isoform X1 OS=Juglans regia OX=51240 GN=LOC109014255 PE=4 SV=1) HSP 1 Score: 451.8 bits (1161), Expect = 1.1e-123 Identity = 214/274 (78.10%), Postives = 243/274 (88.69%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: None |