CsaV3_3G000760 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G000760
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Cold shock protein
Location	chr3 : 619119 .. 622332 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAGAAATAGAAAAAAAAAGGGGAAATAAAGGGTAAGCGAATTAGGGTTTTTGGAAAGGGGTAGATCTCATTCTCTTTTGAGCTTCTATATATTGGGAAACCCTTTGGATATTTCGTTCCTCGGTCGCCATTTTTTGCTCACAAATTTTCTTCTCAAACTTACTTTGTGAAGATGGCGGAAGAGAGATTGACTGGTGTTGTTCAGTGGTTTAACGATTCCAAGGGCTTTGGCTTCATCAAGCCAGATGTTGAAGGTCCGGATCTGTTTGTTCATCAATCATCTATTAAATCCGATGGTTACCGGAGCCTTGTCGTCGGAGATCATGTCGAGTTTCAGATCGCTCCTGGTGATGATGGAAAGTCGAAAGCCATTGAGGTTGTTGCGCTTGATGGATCTTCGGGAAATCGGAGGGATAACTTTGGTGGTGGTGGAGGTGGAAGGGGTGGCCGCGGGGGAGGTGGCGGTGGAGGTTATGGGTTTGGTGGTTGGAGAGGAGGTGATAGGCGGAATGGGAACAGTGGAGCAGGTGGGGGTGGGTGTTATCAATGTGGTGAGCAAGGGCATTTGGCTAGAGATTGTACTCGTCCTAGTAACCGCGGCGGTGGCGGCGGTGGAGGTGGTGGGTGTTTTACTTGCGGTGAAGTTGGTCACTTAGCGAGGGATTGTCCACGAGGGAACAGTGGTGGAGGCGGAGGTGGAGGCGGCGGTGGCGGTGGGGCTTGCTACAATTGTGGTGGTTTTGGGCATTTGGCTAGGGATTGCAATAGGGGTGGAGCTGGAGGTGGAAGTGGTGGCGGCGGCGGCGGCGGTGGTTGTTTTAATTGTGGGGAGTATGGGCATATAGCCAGAGATTGCCAGAATGAAAGCCGTGGCAGCGGTGGTGGTGGTGGCGGAAGATTTGGTGGCGGCGGCGGCGGTGGCGGTGGCTCAAACACTTGCTTCAATTGTGGGAAATCGGGGCATTTTGCTAGGGAGTGTCCTGATGCATCTTGATAAGGAGGGGGAAAGAGTAATAGTATATAATTTTTCCTTTAACCTCAATATTGTCCTTTAATTATGTTCTTCTTTTGGTGTGGATGGTGGCTATACGTAGCTTTACTTGAGAGGTTTCTATTAATTTTGATATTTTCCATGGTTGTTTAGCTCTTTAGGGGCAAATTTTTCTGGTTCACACATGATGTGGTAATTCGGTTAAATGAGGCATTTTTATCTTCTGTTCTTGTTTTGTTACCTTTTCATATTTCGAGTTAATGTTGTGCGATGTCTGATTCAATTGTAATTATCCATGTTAACATTTAATAACACATGGAATGCAGTAGCTAAGTTCGATTTGATGATATACGTTGTTTCTTGTTGGCAATTTCTTTGTTTTAGCAATACCATACTAGGCCATCATTTCGTTTACTTCATCATCAAGAAGGGATTTCTCTTAGAGAATTCATTTATTCTGATCCTCAAGTGTTATGAGGTATGCTTAGGTGCACACTGCTCTGTCTTTCTTAGTTCTTTGTGTTTAGGAGTTGATGCTTGTGTTTGGTATTTCTATGTTTTCAATCCTCTATATTTTTTTTAATTTATTCTTCTAAGTTTCACAGATATAACTCTTACTACTAATTTCAAACTTGCCCAAAAGATTTACCAAAAGAACAAGGGGTAGTTTATGTAGGGTTTTGACAAGACGAAGCAGAAGGCACACTTGAAGTGACTTGTGAATAATTGAATTAAAAGAAGACTAATGGATAATGCTTTTGTGATGCAAATAATTGAATGCTTGTTAGTGTCTAGTCACTGCCTTCTATATGTGAATGTGAATGTGAATGTGAAGTGTAGGTGAGGGATGGGTTCTCTTTATCCATCTCAGCCCTTTTTCTTGAGGACTTGGGGTGGGTTATATGTGTGTTTGTGTGGGGACATTGGTGTGGAATAGTCATCCCAACATTTATTTTAAGTTAAAAGTCTTATGAAGTAACTTCTTATTATATGTTTGATTAGTAGCTAGACTAATGTAAGTGTAGTAAATTCCCATCAATGTGTATTTGACAAGATCACTAATAAGTAAATAGTATTTTGATCTTGGGTCTTCAACTTTTCTCTACTCCTATCTATGAAATGGAAATTCTTAGAACATTAATTTCCCCTCCTTGCCCTTGCCCTGTATGAGATATAATGTTTTCTTCATGGTATATAGTATCATTTTGGGCTGGTGTGGGAATCAAATGATGTAGTTCTTCTCATACTCAAGAGTTATCTTTTGTGGGTTTTTGGATAAAGCTAATGAATAACTCAGAGGTTCAAGAAGGAGTTTATGAAGTCTAGTATTCTCCTCCAAAGTCCAAAATCATTTCTTTGAACACCTTTTAGAAAGGAATATAGTTTAAGTGATCTTTTAGTGTTGAATTCTTTTGTTTGACTGATTTTGATATGTTCTGCATTATGCTTATTCATGTGTTGACTATTATACTTAAGTTCAACTTTATTCTCGTATAGTTTAAAGGAAAGAAAGAAATTATTCCCATCTAGCTCTGTTCAATATAGTTTATCACATCCTAAGAGGTTTACTTAAACACTTGTCCTAAACATATCAATTGTATTTACTTTGGTTATTCTTCCTTAAGCTTTGTTCCTACCCATCTGTGAGAGGCTAATGAAGAATTTCTCATTGCCATTGTTTACTCTCTTTTCCTCGTTGCTCTATGAGTTTTGTAAGTTCATAACCTCAAAGGCTGGCTGTTATTGATTGCTTAGAGAACTTCCAAGCTTTTAACTTGAAGTTAGTTTGCAATATAATTCCTCTAATTGTTCCTTGTGGTGCTGCCATTTATTGACCTTTGCTTTCAACAAGTCTATGAAACGCCTATTAGATGCATGTTGACTCTAAATTTTGTAGTTTATGAATCTAATTTGTAATTAGAGTAGTAGTTGTTTCTTTTCGAAACATGTTACATATGGTTTCATGGAACATCAACCAAGTAAAGTTGAAATGAAATAAATAGATGATTGTAACATTGTATAAACGACAAATCTCCATATTTGAATTATTATAAGGAAAACAACAAAAGGGTGTCTCTTCCTTTGGATGAAGAGACATAGAGCCATAATGTGTTATGCTTTTTTGTTTTGTTGGTCAATTTTGTATACAAACACTTCTAAGGTCGTGACCTTCTTTTGTTAAAAGAATGCTGCTTTGGACCTTACCAAATTCTACAGTCCCG

mRNA sequence

ATGGCGGAAGAGAGATTGACTGGTGTTGTTCAGTGGTTTAACGATTCCAAGGGCTTTGGCTTCATCAAGCCAGATGTTGAAGGTCCGGATCTGTTTGTTCATCAATCATCTATTAAATCCGATGGTTACCGGAGCCTTGTCGTCGGAGATCATGTCGAGTTTCAGATCGCTCCTGGTGATGATGGAAAGTCGAAAGCCATTGAGGTTGTTGCGCTTGATGGATCTTCGGGAAATCGGAGGGATAACTTTGGTGGTGGTGGAGGTGGAAGGGGTGGCCGCGGGGGAGGTGGCGGTGGAGGTTATGGGTTTGGTGGTTGGAGAGGAGGTGATAGGCGGAATGGGAACAGTGGAGCAGGTGGGGGTGGGTGTTATCAATGTGGTGAGCAAGGGCATTTGGCTAGAGATTGTACTCGTCCTAGTAACCGCGGCGGTGGCGGCGGTGGAGGTGGTGGGTGTTTTACTTGCGGTGAAGTTGGTCACTTAGCGAGGGATTGTCCACGAGGGAACAGTGGTGGAGGCGGAGGTGGAGGCGGCGGTGGCGGTGGGGCTTGCTACAATTGTGGTGGTTTTGGGCATTTGGCTAGGGATTGCAATAGGGGTGGAGCTGGAGGTGGAAGTGGTGGCGGCGGCGGCGGCGGTGGTTGTTTTAATTGTGGGGAGTATGGGCATATAGCCAGAGATTGCCAGAATGAAAGCCGTGGCAGCGGTGGTGGTGGTGGCGGAAGATTTGGTGGCGGCGGCGGCGGTGGCGGTGGCTCAAACACTTGCTTCAATTGTGGGAAATCGGGGCATTTTGCTAGGGAGTGTCCTGATGCATCTTGA

Coding sequence (CDS)

ATGGCGGAAGAGAGATTGACTGGTGTTGTTCAGTGGTTTAACGATTCCAAGGGCTTTGGCTTCATCAAGCCAGATGTTGAAGGTCCGGATCTGTTTGTTCATCAATCATCTATTAAATCCGATGGTTACCGGAGCCTTGTCGTCGGAGATCATGTCGAGTTTCAGATCGCTCCTGGTGATGATGGAAAGTCGAAAGCCATTGAGGTTGTTGCGCTTGATGGATCTTCGGGAAATCGGAGGGATAACTTTGGTGGTGGTGGAGGTGGAAGGGGTGGCCGCGGGGGAGGTGGCGGTGGAGGTTATGGGTTTGGTGGTTGGAGAGGAGGTGATAGGCGGAATGGGAACAGTGGAGCAGGTGGGGGTGGGTGTTATCAATGTGGTGAGCAAGGGCATTTGGCTAGAGATTGTACTCGTCCTAGTAACCGCGGCGGTGGCGGCGGTGGAGGTGGTGGGTGTTTTACTTGCGGTGAAGTTGGTCACTTAGCGAGGGATTGTCCACGAGGGAACAGTGGTGGAGGCGGAGGTGGAGGCGGCGGTGGCGGTGGGGCTTGCTACAATTGTGGTGGTTTTGGGCATTTGGCTAGGGATTGCAATAGGGGTGGAGCTGGAGGTGGAAGTGGTGGCGGCGGCGGCGGCGGTGGTTGTTTTAATTGTGGGGAGTATGGGCATATAGCCAGAGATTGCCAGAATGAAAGCCGTGGCAGCGGTGGTGGTGGTGGCGGAAGATTTGGTGGCGGCGGCGGCGGTGGCGGTGGCTCAAACACTTGCTTCAATTGTGGGAAATCGGGGCATTTTGCTAGGGAGTGTCCTGATGCATCTTGA

Protein sequence

MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGGGGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGGRFGGGGGGGGGSNTCFNCGKSGHFARECPDAS

Homology

[Close]

BLAST of CsaV3_3G000760 vs. NCBI nr
Match: XP_004146143.1 (PREDICTED: cold shock domain-containing protein 3-like [Cucumis sativus] >KGN55657.1 hypothetical protein Csa_3G002765 [Cucumis sativus])

HSP 1 Score: 180.6 bits (457), Expect = 7.0e-42
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           DGKSKAIEVVALDGSSGNRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  DGKSKAIEVVALDGSSGNRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXEQGHLARDCTRPSN 142
           XXXXXXXEQGHLARDCTRPSN
Sbjct: 121 XXXXXXXEQGHLARDCTRPSN 141

[Close]

BLAST of CsaV3_3G000760 vs. NCBI nr
Match: XP_022965328.1 (cold shock domain-containing protein 3-like [Cucurbita maxima])

HSP 1 Score: 168.7 bits (426), Expect = 2.8e-38
Identity = 137/141 (97.16%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           DGKSKAIEVVALDGSSGNR  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  DGKSKAIEVVALDGSSGNR--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXEQGHLARDCTRPSN 142
           XXXXXXX QGHLARDCTR SN
Sbjct: 121 XXXXXXXXQGHLARDCTRASN 139

[Close]

BLAST of CsaV3_3G000760 vs. NCBI nr
Match: XP_023551806.1 (cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 168.7 bits (426), Expect = 2.8e-38
Identity = 137/141 (97.16%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           DGKSKAIEVVALDGSSGNR  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  DGKSKAIEVVALDGSSGNR--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXEQGHLARDCTRPSN 142
           XXXXXXX QGHLARDCTR SN
Sbjct: 121 XXXXXXXXQGHLARDCTRASN 139

[Close]

BLAST of CsaV3_3G000760 vs. NCBI nr
Match: XP_023540854.1 (cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo] >XP_023540855.1 cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 166.8 bits (421), Expect = 1.0e-37
Identity = 133/140 (95.00%), Postives = 133/140 (95.00%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           DGKSKAIEVVALDGSSGNRR    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  DGKSKAIEVVALDGSSGNRR----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXEQGHLARDCTRPS 141
           XXXXXXX QGHLARDC RPS
Sbjct: 121 XXXXXXXXQGHLARDCARPS 136

[Close]

BLAST of CsaV3_3G000760 vs. NCBI nr
Match: XP_008448549.1 (PREDICTED: cold shock domain-containing protein 3 [Cucumis melo] >ADN33944.1 cold-shock DNA-binding family protein [Cucumis melo subsp. melo])

HSP 1 Score: 166.4 bits (420), Expect = 1.4e-37
Identity = 137/142 (96.48%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGN---RRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           DGKSKAIEVVALDGSSGN     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  DGKSKAIEVVALDGSSGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXEQGHLARDCTRP 140
           XXXXXXXXXXEQGHLARDCTRP
Sbjct: 121 XXXXXXXXXXEQGHLARDCTRP 142

[Close]

BLAST of CsaV3_3G000760 vs. TAIR10
Match: AT2G17870.1 (cold shock domain protein 3)

HSP 1 Score: 97.8 bits (242), Expect = 1.1e-20
Identity = 46/76 (60.53%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 5  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKS 64
          R  G V WF+D KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VE++IA G DGK+
Sbjct: 10 RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 65 KAIEVVALDGSSGNRR 81
          KAIEV A  G S N++
Sbjct: 70 KAIEVTAPGGGSLNKK 85

[Close]

BLAST of CsaV3_3G000760 vs. TAIR10
Match: AT4G36020.1 (cold shock domain protein 1)

HSP 1 Score: 92.8 bits (229), Expect = 3.5e-19
Identity = 44/67 (65.67%), Postives = 49/67 (73.13%), Query Frame = 0


Query: 5  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKS 64
          R TG V WFN SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VEF I  G DGK+
Sbjct: 10 RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 65 KAIEVVA 72
          KA+ V A
Sbjct: 70 KAVNVTA 76

[Close]

BLAST of CsaV3_3G000760 vs. TAIR10
Match: AT2G21060.1 (glycine-rich protein 2B)

HSP 1 Score: 83.2 bits (204), Expect = 2.8e-16
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 4  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGK 63
          +R  G V+WF+  KGFGFI P   G DLFVHQSSI+S+G+RSL   + VEF +   + G+
Sbjct: 13 DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGR 72

Query: 64 SKAIEVVALDGS 76
           KAIEV   DG+
Sbjct: 73 PKAIEVSGPDGA 84

[Close]

BLAST of CsaV3_3G000760 vs. TAIR10
Match: AT4G38680.1 (glycine rich protein 2)

HSP 1 Score: 82.8 bits (203), Expect = 3.6e-16
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 0


Query: 4  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGK 63
          ER  G V+WF+  KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VEF++   ++ +
Sbjct: 9  ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68

Query: 64 SKAIEVVALDGS 76
           KAI+V   DG+
Sbjct: 69 PKAIDVSGPDGA 80

[Close]

BLAST of CsaV3_3G000760 vs. Swiss-Prot
Match: sp|Q94C69|CSP3_ARATH (Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.0e-19
Identity = 46/76 (60.53%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 5  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKS 64
          R  G V WF+D KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VE++IA G DGK+
Sbjct: 10 RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 65 KAIEVVALDGSSGNRR 81
          KAIEV A  G S N++
Sbjct: 70 KAIEVTAPGGGSLNKK 85

[Close]

BLAST of CsaV3_3G000760 vs. Swiss-Prot
Match: sp|P27484|GRP2_NICSY (Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.7e-19
Identity = 44/79 (55.70%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 1  MAEE---RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA 60
          MAEE   R  G V+WF+D KGFGFI PD  G DLFVHQS I+S+G+RSL  G+ VEF++ 
Sbjct: 1  MAEESGQRAKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEGFRSLAEGETVEFEVE 60

Query: 61 PGDDGKSKAIEVVALDGSS 77
           G DG++KA++V   DG++
Sbjct: 61 SGGDGRTKAVDVTGPDGAA 79

[Close]

BLAST of CsaV3_3G000760 vs. Swiss-Prot
Match: sp|O65639|CSP1_ARATH (Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 6.3e-18
Identity = 44/67 (65.67%), Postives = 49/67 (73.13%), Query Frame = 0


Query: 5  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKS 64
          R TG V WFN SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VEF I  G DGK+
Sbjct: 10 RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 65 KAIEVVA 72
          KA+ V A
Sbjct: 70 KAVNVTA 76

[Close]

BLAST of CsaV3_3G000760 vs. Swiss-Prot
Match: sp|Q38896|CSP4_ARATH (Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 5.0e-15
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 4  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGK 63
          +R  G V+WF+  KGFGFI P   G DLFVHQSSI+S+G+RSL   + VEF +   + G+
Sbjct: 13 DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGR 72

Query: 64 SKAIEVVALDGS 76
           KAIEV   DG+
Sbjct: 73 PKAIEVSGPDGA 84

[Close]

BLAST of CsaV3_3G000760 vs. Swiss-Prot
Match: sp|Q41188|CSP2_ARATH (Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.5e-15
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 0


Query: 4  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGK 63
          ER  G V+WF+  KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VEF++   ++ +
Sbjct: 9  ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68

Query: 64 SKAIEVVALDGS 76
           KAI+V   DG+
Sbjct: 69 PKAIDVSGPDGA 80

[Close]

BLAST of CsaV3_3G000760 vs. TrEMBL
Match: tr|A0A0A0L4X7|A0A0A0L4X7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002765 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 4.6e-42
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           DGKSKAIEVVALDGSSGNRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  DGKSKAIEVVALDGSSGNRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXEQGHLARDCTRPSN 142
           XXXXXXXEQGHLARDCTRPSN
Sbjct: 121 XXXXXXXEQGHLARDCTRPSN 141

[Close]

BLAST of CsaV3_3G000760 vs. TrEMBL
Match: tr|A0A1S3BKK1|A0A1S3BKK1_CUCME (cold shock domain-containing protein 3 OS=Cucumis melo OX=3656 GN=LOC103490693 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 9.0e-38
Identity = 137/142 (96.48%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGN---RRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           DGKSKAIEVVALDGSSGN     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  DGKSKAIEVVALDGSSGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXEQGHLARDCTRP 140
           XXXXXXXXXXEQGHLARDCTRP
Sbjct: 121 XXXXXXXXXXEQGHLARDCTRP 142

[Close]

BLAST of CsaV3_3G000760 vs. TrEMBL
Match: tr|E5RDD6|E5RDD6_CUCME (Cold-shock DNA-binding family protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 9.0e-38
Identity = 137/142 (96.48%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGN---RRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           DGKSKAIEVVALDGSSGN     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  DGKSKAIEVVALDGSSGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXEQGHLARDCTRP 140
           XXXXXXXXXXEQGHLARDCTRP
Sbjct: 121 XXXXXXXXXXEQGHLARDCTRP 142

[Close]

BLAST of CsaV3_3G000760 vs. TrEMBL
Match: tr|A0A1S3UN22|A0A1S3UN22_VIGRR (cold shock protein 1 OS=Vigna radiata var. radiata OX=3916 GN=LOC106767041 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.0e-24
Identity = 58/86 (67.44%), Postives = 68/86 (79.07%), Query Frame = 0


Query: 1  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
          MAEER TGVVQWFN+ KGFGFIKPD  G DLFVHQSSI+SDGYR+L+ GDHVEF IA GD
Sbjct: 1  MAEERFTGVVQWFNNGKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDHVEFAIATGD 60

Query: 61 DGKSKAIEVVALDG-------SSGNR 80
          + K+KA++V  +DG       +SGNR
Sbjct: 61 NDKTKAVDVTGIDGAPLQPRAASGNR 86

[Close]

BLAST of CsaV3_3G000760 vs. TrEMBL
Match: tr|A0A2P5FNS9|A0A2P5FNS9_9ROSA (Uncharacterized protein (Fragment) OS=Trema orientalis OX=63057 GN=TorRG33x02_046160 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.7e-23
Identity = 59/81 (72.84%), Postives = 66/81 (81.48%), Query Frame = 0


Query: 1  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
          MAEER TG V+WFNDSKGFGFIKPD  G DLFVHQSSIKSDG+RSL  G+ VEFQIA  D
Sbjct: 13 MAEERSTGTVRWFNDSKGFGFIKPDDGGEDLFVHQSSIKSDGFRSLSEGETVEFQIALTD 72

Query: 61 DGKSKAIEVVALDGSS--GNR 80
          DGK+KA++V   DGSS  GN+
Sbjct: 73 DGKTKAVDVTGPDGSSLQGNK 93

The following BLAST results are available for this feature:

BLAST of CsaV3_3G000760 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146143.1	7.0e-42	100.00	PREDICTED: cold shock domain-containing protein 3-like [Cucumis sativus] >KGN556...	[more]
XP_022965328.1	2.8e-38	97.16	cold shock domain-containing protein 3-like [Cucurbita maxima]	[more]
XP_023551806.1	2.8e-38	97.16	cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo]	[more]
XP_023540854.1	1.0e-37	95.00	cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo] >XP_023...	[more]
XP_008448549.1	1.4e-37	96.48	PREDICTED: cold shock domain-containing protein 3 [Cucumis melo] >ADN33944.1 col...	[more]

BLAST of CsaV3_3G000760 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G17870.1	1.1e-20	60.53	cold shock domain protein 3	[more]
AT4G36020.1	3.5e-19	65.67	cold shock domain protein 1	[more]
AT2G21060.1	2.8e-16	52.78	glycine-rich protein 2B	[more]
AT4G38680.1	3.6e-16	52.78	glycine rich protein 2	[more]

BLAST of CsaV3_3G000760 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q94C69\|CSP3_ARATH	2.0e-19	60.53	Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 P...	[more]
sp\|P27484\|GRP2_NICSY	5.7e-19	55.70	Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1	[more]
sp\|O65639\|CSP1_ARATH	6.3e-18	65.67	Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1	[more]
sp\|Q38896\|CSP4_ARATH	5.0e-15	52.78	Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 P...	[more]
sp\|Q41188\|CSP2_ARATH	6.5e-15	52.78	Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1	[more]

BLAST of CsaV3_3G000760 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L4X7\|A0A0A0L4X7_CUCSA	4.6e-42	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002765 PE=4 SV=1	[more]
tr\|A0A1S3BKK1\|A0A1S3BKK1_CUCME	9.0e-38	96.48	cold shock domain-containing protein 3 OS=Cucumis melo OX=3656 GN=LOC103490693 P...	[more]
tr\|E5RDD6\|E5RDD6_CUCME	9.0e-38	96.48	Cold-shock DNA-binding family protein OS=Cucumis melo subsp. melo OX=412675 PE=4...	[more]
tr\|A0A1S3UN22\|A0A1S3UN22_VIGRR	2.0e-24	67.44	cold shock protein 1 OS=Vigna radiata var. radiata OX=3916 GN=LOC106767041 PE=4 ...	[more]
tr\|A0A2P5FNS9\|A0A2P5FNS9_9ROSA	1.7e-23	72.84	Uncharacterized protein (Fragment) OS=Trema orientalis OX=63057 GN=TorRG33x02_04...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0003676	nucleic acid binding
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR012340	NA-bd_OB-fold
IPR036875	Znf_CCHC_sf
IPR019844	Cold-shock_CS
IPR001878	Znf_CCHC
IPR011129	CSD
IPR002059	CSP_DNA-bd

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G000760.1	CsaV3_3G000760.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002059	Cold-shock protein, DNA-binding	PRINTS	PR00050	COLDSHOCK	coord: 44..62 score: 40.09 coord: 8..23 score: 61.03 coord: 29..38 score: 59.44
IPR002059	Cold-shock protein, DNA-binding	PFAM	PF00313	CSD	coord: 7..70 e-value: 1.1E-22 score: 79.6
IPR002059	Cold-shock protein, DNA-binding	CDD	cd04458	CSP_CDS	coord: 7..69 e-value: 1.43692E-23 score: 90.3306
None	No IPR available	PRINTS	PR01228	EGGSHELL	coord: 203..221 score: 50.66 coord: 143..158 score: 45.31 coord: 84..95 score: 44.79 coord: 170..180 score: 45.45
None	No IPR available	GENE3D	G3DSA:4.10.60.10		coord: 104..148 e-value: 1.9E-6 score: 29.7
None	No IPR available	GENE3D	G3DSA:4.10.60.10		coord: 149..174 e-value: 2.8E-7 score: 32.1 coord: 180..206 e-value: 2.0E-5 score: 26.2 coord: 252..273 e-value: 4.6E-8 score: 34.6 coord: 211..237 e-value: 1.5E-7 score: 32.9
None	No IPR available	GENE3D	G3DSA:2.40.50.140		coord: 1..70 e-value: 6.5E-25 score: 88.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..96
None	No IPR available	PANTHER	PTHR11544:SF50	SUBFAMILY NOT NAMED	coord: 141..180
None	No IPR available	PANTHER	PTHR11544	COLD SHOCK DOMAIN CONTAINING PROTEINS	coord: 141..180
None	No IPR available	PANTHER	PTHR11544:SF50	SUBFAMILY NOT NAMED	coord: 158..213 coord: 1..156
None	No IPR available	PANTHER	PTHR11544	COLD SHOCK DOMAIN CONTAINING PROTEINS	coord: 246..273
None	No IPR available	PANTHER	PTHR11544	COLD SHOCK DOMAIN CONTAINING PROTEINS	coord: 158..213 coord: 1..156
None	No IPR available	PANTHER	PTHR11544:SF50	SUBFAMILY NOT NAMED	coord: 246..273
IPR011129	Cold shock domain	SMART	SM00357	csp_8	coord: 7..72 e-value: 1.5E-24 score: 97.6
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 255..271 e-value: 5.9E-6 score: 35.8 coord: 214..230 e-value: 2.5E-5 score: 33.7 coord: 122..138 e-value: 2.9E-4 score: 30.2 coord: 183..199 e-value: 4.0E-4 score: 29.7 coord: 151..167 e-value: 2.6E-5 score: 33.7
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 122..137 e-value: 2.9E-6 score: 27.0 coord: 151..166 e-value: 8.8E-8 score: 31.8 coord: 214..229 e-value: 3.7E-7 score: 29.8 coord: 254..270 e-value: 5.2E-8 score: 32.5 coord: 183..197 e-value: 3.5E-6 score: 26.7
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 256..271 score: 11.433
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 215..230 score: 10.938
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 123..138 score: 11.004
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 184..197 score: 10.477
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 152..167 score: 11.087
IPR019844	Cold-shock conserved site	PROSITE	PS00352	COLD_SHOCK	coord: 19..38
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	coord: 113..169
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	coord: 237..271
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	coord: 183..230
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	coord: 4..74

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G000760	CSPI03G00720	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G000760	CmaCh16G012390	Cucurbita maxima (Rimu)	cmacucB0380
CsaV3_3G000760	CmaCh06G005770	Cucurbita maxima (Rimu)	cmacucB0967
CsaV3_3G000760	CmoCh16G012850	Cucurbita moschata (Rifu)	cmocucB0377
CsaV3_3G000760	CmoCh06G005820	Cucurbita moschata (Rifu)	cmocucB0955
CsaV3_3G000760	Cp4.1LG14g10210	Cucurbita pepo (Zucchini)	cpecucB0255
CsaV3_3G000760	Cp4.1LG08g09210	Cucurbita pepo (Zucchini)	cpecucB1059
CsaV3_3G000760	CsGy3G000690	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G000760	Carg19474	Silver-seed gourd	carcucB0462
CsaV3_3G000760	Carg16263	Silver-seed gourd	carcucB0715
CsaV3_3G000760	Cla008899	Watermelon (97103) v1	cucwmB209
CsaV3_3G000760	MELO3C013764	Melon (DHL92) v3.5.1	cucmeB246
CsaV3_3G000760	ClCG10G000710	Watermelon (Charleston Gray)	cucwcgB194
CsaV3_3G000760	Lsi07G011020	Bottle gourd (USVL1VR-Ls)	cuclsiB250
CsaV3_3G000760	MELO3C013764.2	Melon (DHL92) v3.6.1	cucmedB231
CsaV3_3G000760	Cla97C10G185270	Watermelon (97103) v2	cucwmbB182
CsaV3_3G000760	BhiUN179G36	Wax gourd	cucwgoB343

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G000760	Cucumber (Gy14) v1	cgycucB499
CsaV3_3G000760	Cucurbita pepo (Zucchini)	cpecucB0692