BhiUN179G36 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	BhiUN179G36
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Cold shock protein
Location	Contig179 : 713441 .. 715249 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAAATTGAAATAAGAAGAAGAAAAAAAAAGCATATTAAAAAAAATGAAAAGTTAATTAATTTAATTCTTAATTTATTTAAAATACAAAAAATGGGGGAAATAAACCGTAAGCGAATTAGGGTTTTGGAAAGGGTAGATCTCATTCTCTCTTTCAGCTTCTATATATTGCGAAGCCCTTTCAATATTTTGCTCTCATCGCCATTTTTTTGCACAGAAATTTCTTCCCAACTTTGAAGATGGCGGAAGAGAGATTGACTGGTGTGGTTCAGTGGTTTAACGATTCGAAAGGTTTCGGCTTCATCAAACCAGATGTAGAAGGTCCGGATCTGTTTGTTCATCAATCTTCCATTAAATCCGATGGTTACCGGAGCCTTGTCGTCGGAGATCATGTCGAGTTTCAGATCGCTCCTGGTGATGATGGCAAATCGAAAGCCATTGAGGTTGTTGCGCTCGATGGATCTTCGGGAAATCGAAGGGATAACTTTGGTGGTGGTGGTGGAAGGGGTGGTCGCGGCGGAGGTGGCGGTGGAGGTTATGGGTTTGGTGGTTGGAGGGGAGGTGATAGGCGGAATGGGAACAGTGGAGCCGGTGGGGGTGCGTGTTATCAATGCGGTGAGCAAGGGCATTTGGCGAGAGACTGTACTCGTGCTAGTAACCGCAGCGGCGGTGGTGGAGGCGGCGGTGGGTGTTTTACTTGCGGTGAAGTTGGCCACTTAGCGAGGGATTGTCCGCGAGGAAACAGTGGCGGAGGTGGAGGTGGAGGCGGCGGTGGTGCCGGGGCTTGCTATAATTGTGGTGGTTTTGGGCATTTGGCTAGAGATTGCAATAGGGGTGGAGCTGGAGGTGGGAGTGGTGGTGGTGGTGGTTGCTTTAATTGTGGGGAATATGGGCATATAGCTAGAGATTGCCAGAATGAAAGCCGTGGCAGCGGCGGTGGTGGCGGAAGATTTGGTGGCGGCGGCAGCGGCGGTGGCGGTGGGCCAAACACTTGCTTCAATTGTGGGAAATCGGGTCATTTTGCTAGGGAGTGTCCTGATGCACCTTGATAAGGAGGGGGAAAGAGTAATAGTATATAATTTTTCCTTTAACCTCAATATTGTCCTTTAATTATGTTCTTCTTTTGGTGTGGATGGTGGCTATACGTAGCTTACTTGAGAGGTTTTTATTAATTTTGATATTTCATGGTTGTTTCGCTCTTTAGGGGCAAATTTTTCAGGTTCACACATGGTGTGGTAATTCGGTTAAATGAGGCATTTTTATCTTCTTTTCCTTTTTTTTTTTAATTACCTTTTATATCTCGAATTCAGGTTGTGCGATGTCTGATTCAATTGTAATTATCCATGTTAACATCTAATAGCCCATGAGATGAAGTAGCTAAGTTCAGTTTGGTGATATACGTTGTAGGCATGTTCTTTGTTTTAGCAATACCGTACTAGGCCTTCATTTTGTTTACTTCTTCATCATCAAGAATGGATTTCTTTTATTATGATCCTCAAGTGTTACAAGGCATGTCCGGGTGCACTCTGCTCTGTCTTGCTTTGTTCTGTGCTTTATAAATTCTGGTGTGGAAGTATTTTAGAAGTTGTGGTATGTGGTTGGTGGTTGGTGGTTTTATGCTTTTAATCCCATTTCAAGTTTCATAGATTTGACTCCTAGACCCTAGTATAAATTTATAAATTGTCCAAAAGATTTACCAATAAAAACATAGGTATATACAGGGCTTTAACAAGACGAAGCAGAAAGCATTGAAAGTGAATGTAAATAATTGAATTAAAAGAAGGCTAATGCGTCCACGCTTTTAGTCTAG

mRNA sequence

ATTAAATTGAAATAAGAAGAAGAAAAAAAAAGCATATTAAAAAAAATGAAAAGTTAATTAATTTAATTCTTAATTTATTTAAAATACAAAAAATGGGGGAAATAAACCGTAAGCGAATTAGGGTTTTGGAAAGGGTAGATCTCATTCTCTCTTTCAGCTTCTATATATTGCGAAGCCCTTTCAATATTTTGCTCTCATCGCCATTTTTTTGCACAGAAATTTCTTCCCAACTTTGAAGATGGCGGAAGAGAGATTGACTGGTGTGGTTCAGTGGTTTAACGATTCGAAAGGTTTCGGCTTCATCAAACCAGATGTAGAAGGTCCGGATCTGTTTGTTCATCAATCTTCCATTAAATCCGATGGTTACCGGAGCCTTGTCGTCGGAGATCATGTCGAGTTTCAGATCGCTCCTGGTGATGATGGCAAATCGAAAGCCATTGAGGTTGTTGCGCTCGATGGATCTTCGGGAAATCGAAGGGATAACTTTGGTGGTGGTGGTGGAAGGGGTGGTCGCGGCGGAGGTGGCGGTGGAGGTTATGGGTTTGGTGGTTGGAGGGGAGGTGATAGGCGGAATGGGAACAGTGGAGCCGGTGGGGGTGCGTGTTATCAATGCGGTGAGCAAGGGCATTTGGCGAGAGACTGTACTCGTGCTAGTAACCGCAGCGGCGGTGGTGGAGGCGGCGGTGGGTGTTTTACTTGCGGTGAAGTTGGCCACTTAGCGAGGGATTGTCCGCGAGGAAACAGTGGCGGAGGTGGAGGTGGAGGCGGCGGTGGTGCCGGGGCTTGCTATAATTGTGGTGGTTTTGGGCATTTGGCTAGAGATTGCAATAGGGGTGGAGCTGGAGGTGGGAGTGGTGGTGGTGGTGGTTGCTTTAATTGTGGGGAATATGGGCATATAGCTAGAGATTGCCAGAATGAAAGCCGTGGCAGCGGCGGTGGTGGCGGAAGATTTGGTGGCGGCGGCAGCGGCGGTGGCGGTGGGCCAAACACTTGCTTCAATTGTGGGAAATCGGGTCATTTTGCTAGGGAGTGTCCTGATGCACCTTGATAAGGAGGGGGAAAGAGTAATAGTATATAATTTTTCCTTTAACCTCAATATTGTCCTTTAATTATGTTCTTCTTTTGGTGTGGATGGTGGCTATACGTAGCTTACTTGAGAGGTTTTTATTAATTTTGATATTTCATGGTTGTTTCGCTCTTTAGGGGCAAATTTTTCAGGTTCACACATGGTGTGGTAATTCGGTTAAATGAGGCATTTTTATCTTCTTTTCCTTTTTTTTTTTAATTACCTTTTATATCTCGAATTCAGGTTGTGCGATGTCTGATTCAATTGTAATTATCCATGTTAACATCTAATAGCCCATGAGATGAAGTAGCTAAGTTCAGTTTGGTGATATACGTTGTAGGCATGTTCTTTGTTTTAGCAATACCGTACTAGGCCTTCATTTTGTTTACTTCTTCATCATCAAGAATGGATTTCTTTTATTATGATCCTCAAGTGTTACAAGGCATGTCCGGGTGCACTCTGCTCTGTCTTGCTTTGTTCTGTGCTTTATAAATTCTGGTGTGGAAGTATTTTAGAAGTTGTGGTATGTGGTTGGTGGTTGGTGGTTTTATGCTTTTAATCCCATTTCAAGTTTCATAGATTTGACTCCTAGACCCTAGTATAAATTTATAAATTGTCCAAAAGATTTACCAATAAAAACATAGGTATATACAGGGCTTTAACAAGACGAAGCAGAAAGCATTGAAAGTGAATGTAAATAATTGAATTAAAAGAAGGCTAATGCGTCCACGCTTTTAGTCTAG

Coding sequence (CDS)

ATGGCGGAAGAGAGATTGACTGGTGTGGTTCAGTGGTTTAACGATTCGAAAGGTTTCGGCTTCATCAAACCAGATGTAGAAGGTCCGGATCTGTTTGTTCATCAATCTTCCATTAAATCCGATGGTTACCGGAGCCTTGTCGTCGGAGATCATGTCGAGTTTCAGATCGCTCCTGGTGATGATGGCAAATCGAAAGCCATTGAGGTTGTTGCGCTCGATGGATCTTCGGGAAATCGAAGGGATAACTTTGGTGGTGGTGGTGGAAGGGGTGGTCGCGGCGGAGGTGGCGGTGGAGGTTATGGGTTTGGTGGTTGGAGGGGAGGTGATAGGCGGAATGGGAACAGTGGAGCCGGTGGGGGTGCGTGTTATCAATGCGGTGAGCAAGGGCATTTGGCGAGAGACTGTACTCGTGCTAGTAACCGCAGCGGCGGTGGTGGAGGCGGCGGTGGGTGTTTTACTTGCGGTGAAGTTGGCCACTTAGCGAGGGATTGTCCGCGAGGAAACAGTGGCGGAGGTGGAGGTGGAGGCGGCGGTGGTGCCGGGGCTTGCTATAATTGTGGTGGTTTTGGGCATTTGGCTAGAGATTGCAATAGGGGTGGAGCTGGAGGTGGGAGTGGTGGTGGTGGTGGTTGCTTTAATTGTGGGGAATATGGGCATATAGCTAGAGATTGCCAGAATGAAAGCCGTGGCAGCGGCGGTGGTGGCGGAAGATTTGGTGGCGGCGGCAGCGGCGGTGGCGGTGGGCCAAACACTTGCTTCAATTGTGGGAAATCGGGTCATTTTGCTAGGGAGTGTCCTGATGCACCTTGA

Protein sequence

MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSGAGGGACYQCGEQGHLARDCTRASNRSGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGGAGACYNCGGFGHLARDCNRGGAGGGSGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGSGGGGGPNTCFNCGKSGHFARECPDAP

Homology

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BLAST of BhiUN179G36 vs. TAIR10
Match: AT2G17870.1 (cold shock domain protein 3)

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-21
Identity = 55/135 (40.74%), Postives = 69/135 (51.11%), Query Frame = 0


Query: 5   RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKS 64
           R  G V WF+D KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VE++IA G DGK+
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 65  KAIEVVALDGSSGNRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYQ 124
           KAIEV A  G S N++                                          + 
Sbjct: 70  KAIEVTAPGGGSLNKK-------------------------------ENSSRGSGGNCFN 113

Query: 125 CGEQGHLARDCTRAS 140
           CGE GH+A+DC   S
Sbjct: 130 CGEVGHMAKDCDGGS 113

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BLAST of BhiUN179G36 vs. TAIR10
Match: AT4G36020.1 (cold shock domain protein 1)

HSP 1 Score: 92.8 bits (229), Expect = 3.4e-19
Identity = 44/67 (65.67%), Postives = 49/67 (73.13%), Query Frame = 0


Query: 5  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKS 64
          R TG V WFN SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VEF I  G DGK+
Sbjct: 10 RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 65 KAIEVVA 72
          KA+ V A
Sbjct: 70 KAVNVTA 76

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BLAST of BhiUN179G36 vs. TAIR10
Match: AT4G38680.1 (glycine rich protein 2)

HSP 1 Score: 86.3 bits (212), Expect = 3.2e-17
Identity = 90/137 (65.69%), Postives = 106/137 (77.37%), Query Frame = 0


Query: 4   ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGK 63
           ER  G V+WF+  KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VEF++   ++ +
Sbjct: 9   ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68

Query: 64  SKAIEVVALDGS--SGN--RRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 123
            KAI+V   DG+   GN    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 69  PKAIDVSGPDGAPVQGNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 128

Query: 124 XXXYQCGEQGHLARDCT 137
           X  Y+CGE GH+ARDC+
Sbjct: 129 XDCYKCGEPGHMARDCS 145

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BLAST of BhiUN179G36 vs. TAIR10
Match: AT2G21060.1 (glycine-rich protein 2B)

HSP 1 Score: 83.2 bits (204), Expect = 2.7e-16
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 4  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGK 63
          +R  G V+WF+  KGFGFI P   G DLFVHQSSI+S+G+RSL   + VEF +   + G+
Sbjct: 13 DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGR 72

Query: 64 SKAIEVVALDGS 76
           KAIEV   DG+
Sbjct: 73 PKAIEVSGPDGA 84

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BLAST of BhiUN179G36 vs. Swiss-Prot
Match: sp|Q94C69|CSP3_ARATH (Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.0e-20
Identity = 55/135 (40.74%), Postives = 69/135 (51.11%), Query Frame = 0


Query: 5   RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKS 64
           R  G V WF+D KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VE++IA G DGK+
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 65  KAIEVVALDGSSGNRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYQ 124
           KAIEV A  G S N++                                          + 
Sbjct: 70  KAIEVTAPGGGSLNKK-------------------------------ENSSRGSGGNCFN 113

Query: 125 CGEQGHLARDCTRAS 140
           CGE GH+A+DC   S
Sbjct: 130 CGEVGHMAKDCDGGS 113

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BLAST of BhiUN179G36 vs. Swiss-Prot
Match: sp|P27484|GRP2_NICSY (Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.6e-19
Identity = 44/79 (55.70%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 1  MAEE---RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA 60
          MAEE   R  G V+WF+D KGFGFI PD  G DLFVHQS I+S+G+RSL  G+ VEF++ 
Sbjct: 1  MAEESGQRAKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEGFRSLAEGETVEFEVE 60

Query: 61 PGDDGKSKAIEVVALDGSS 77
           G DG++KA++V   DG++
Sbjct: 61 SGGDGRTKAVDVTGPDGAA 79

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BLAST of BhiUN179G36 vs. Swiss-Prot
Match: sp|O65639|CSP1_ARATH (Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 6.2e-18
Identity = 44/67 (65.67%), Postives = 49/67 (73.13%), Query Frame = 0


Query: 5  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKS 64
          R TG V WFN SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VEF I  G DGK+
Sbjct: 10 RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 65 KAIEVVA 72
          KA+ V A
Sbjct: 70 KAVNVTA 76

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BLAST of BhiUN179G36 vs. Swiss-Prot
Match: sp|Q41188|CSP2_ARATH (Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.8e-16
Identity = 90/137 (65.69%), Postives = 106/137 (77.37%), Query Frame = 0


Query: 4   ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGK 63
           ER  G V+WF+  KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VEF++   ++ +
Sbjct: 9   ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68

Query: 64  SKAIEVVALDGS--SGN--RRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 123
            KAI+V   DG+   GN    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 69  PKAIDVSGPDGAPVQGNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 128

Query: 124 XXXYQCGEQGHLARDCT 137
           X  Y+CGE GH+ARDC+
Sbjct: 129 XDCYKCGEPGHMARDCS 145

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BLAST of BhiUN179G36 vs. Swiss-Prot
Match: sp|Q38896|CSP4_ARATH (Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.9e-15
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 4  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGK 63
          +R  G V+WF+  KGFGFI P   G DLFVHQSSI+S+G+RSL   + VEF +   + G+
Sbjct: 13 DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGR 72

Query: 64 SKAIEVVALDGS 76
           KAIEV   DG+
Sbjct: 73 PKAIEVSGPDGA 84

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BLAST of BhiUN179G36 vs. TrEMBL
Match: tr|A0A0A0L4X7|A0A0A0L4X7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002765 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 9.5e-40
Identity = 135/141 (95.74%), Postives = 135/141 (95.74%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRR-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           DGKSKAIEVVALDGSSGNRR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  DGKSKAIEVVALDGSSGNRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXYQCGEQGHLARDCTRASN 141
           XXX    EQGHLARDCTR SN
Sbjct: 121 XXXXXXXEQGHLARDCTRPSN 141

[Close]

BLAST of BhiUN179G36 vs. TrEMBL
Match: tr|A0A1S3BKK1|A0A1S3BKK1_CUCME (cold shock domain-containing protein 3 OS=Cucumis melo OX=3656 GN=LOC103490693 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 4.4e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
          MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61 DGKSKAIEVVALDGSSGN 79
          DGKSKAIEVVALDGSSGN
Sbjct: 61 DGKSKAIEVVALDGSSGN 78

[Close]

BLAST of BhiUN179G36 vs. TrEMBL
Match: tr|E5RDD6|E5RDD6_CUCME (Cold-shock DNA-binding family protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 4.4e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
          MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61 DGKSKAIEVVALDGSSGN 79
          DGKSKAIEVVALDGSSGN
Sbjct: 61 DGKSKAIEVVALDGSSGN 78

[Close]

BLAST of BhiUN179G36 vs. TrEMBL
Match: tr|K7K6H1|K7K6H1_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100806783 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 9.2e-27
Identity = 94/140 (67.14%), Postives = 105/140 (75.00%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEER TGVVQWFN+ KGFGFIKPD  G DLFVHQSSI+SDGYR+L+ GD VEF IA GD
Sbjct: 1   MAEERFTGVVQWFNNGKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDRVEFAIATGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           + K+KA++V  +DG+    R                XXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  NDKTKAVDVTGVDGAPLQPR--------------AAXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXYQCGEQGHLARDCTRASN 141
           X YQCGE GHLARDC R+SN
Sbjct: 121 XCYQCGEFGHLARDCNRSSN 126

[Close]

BLAST of BhiUN179G36 vs. TrEMBL
Match: tr|A0A1S3UN22|A0A1S3UN22_VIGRR (cold shock protein 1 OS=Vigna radiata var. radiata OX=3916 GN=LOC106767041 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 9.2e-27
Identity = 75/145 (51.72%), Postives = 87/145 (60.00%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEER TGVVQWFN+ KGFGFIKPD  G DLFVHQSSI+SDGYR+L+ GDHVEF IA GD
Sbjct: 1   MAEERFTGVVQWFNNGKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDHVEFAIATGD 60

Query: 61  DGKSKAIEVVALDG-------SSGNRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           + K+KA++V  +DG       +SGNR                                  
Sbjct: 61  NDKTKAVDVTGIDGAPLQPRAASGNR-----------------------GSGYGFGSRRN 120

Query: 121 XXXXXXXXXYQCGEQGHLARDCTRA 139
            XXXXX   YQCG+ GHLARDC R+
Sbjct: 121 GXXXXXAACYQCGDFGHLARDCNRS 122

[Close]

BLAST of BhiUN179G36 vs. NCBI nr
Match: XP_004146143.1 (PREDICTED: cold shock domain-containing protein 3-like [Cucumis sativus] >KGN55657.1 hypothetical protein Csa_3G002765 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 1.4e-39
Identity = 135/141 (95.74%), Postives = 135/141 (95.74%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRR-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           DGKSKAIEVVALDGSSGNRR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  DGKSKAIEVVALDGSSGNRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXYQCGEQGHLARDCTRASN 141
           XXX    EQGHLARDCTR SN
Sbjct: 121 XXXXXXXEQGHLARDCTRPSN 141

[Close]

BLAST of BhiUN179G36 vs. NCBI nr
Match: XP_022965328.1 (cold shock domain-containing protein 3-like [Cucurbita maxima])

HSP 1 Score: 170.6 bits (431), Expect = 7.1e-39
Identity = 134/140 (95.71%), Postives = 134/140 (95.71%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           DGKSKAIEVVALDGSSGN RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  DGKSKAIEVVALDGSSGN-RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXYQCGEQGHLARDCTRASN 141
           XX     QGHLARDCTRASN
Sbjct: 121 XXXXXXXQGHLARDCTRASN 139

[Close]

BLAST of BhiUN179G36 vs. NCBI nr
Match: XP_023551806.1 (cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 170.6 bits (431), Expect = 7.1e-39
Identity = 134/140 (95.71%), Postives = 134/140 (95.71%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           DGKSKAIEVVALDGSSGN RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  DGKSKAIEVVALDGSSGN-RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXYQCGEQGHLARDCTRASN 141
           XX     QGHLARDCTRASN
Sbjct: 121 XXXXXXXQGHLARDCTRASN 139

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BLAST of BhiUN179G36 vs. NCBI nr
Match: XP_022923189.1 (cold shock domain-containing protein 3-like [Cucurbita moschata])

HSP 1 Score: 168.3 bits (425), Expect = 3.5e-38
Identity = 133/139 (95.68%), Postives = 133/139 (95.68%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           DGKSKAIEVVALDGSSGN RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  DGKSKAIEVVALDGSSGN-RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXYQCGEQGHLARDCTRAS 140
           XX     QGHLARDCTRAS
Sbjct: 121 XXXXXXXQGHLARDCTRAS 138

[Close]

BLAST of BhiUN179G36 vs. NCBI nr
Match: XP_022948847.1 (cold shock protein 1-like [Cucurbita moschata] >XP_022948857.1 cold shock protein 1-like [Cucurbita moschata])

HSP 1 Score: 166.4 bits (420), Expect = 1.3e-37
Identity = 129/140 (92.14%), Postives = 129/140 (92.14%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           M EERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GD
Sbjct: 1   MGEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           DGKSKAIEVVALDGSSGNRR   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  DGKSKAIEVVALDGSSGNRR---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXYQCGEQGHLARDCTRASN 141
           XX     QGHLARDC RASN
Sbjct: 121 XXXXXXXQGHLARDCARASN 137

The following BLAST results are available for this feature:

BLAST of BhiUN179G36 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G17870.1	1.6e-21	40.74	cold shock domain protein 3	[more]
AT4G36020.1	3.4e-19	65.67	cold shock domain protein 1	[more]
AT4G38680.1	3.2e-17	65.69	glycine rich protein 2	[more]
AT2G21060.1	2.7e-16	52.78	glycine-rich protein 2B	[more]

BLAST of BhiUN179G36 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q94C69\|CSP3_ARATH	3.0e-20	40.74	Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 P...	[more]
sp\|P27484\|GRP2_NICSY	5.6e-19	55.70	Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1	[more]
sp\|O65639\|CSP1_ARATH	6.2e-18	65.67	Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1	[more]
sp\|Q41188\|CSP2_ARATH	5.8e-16	65.69	Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1	[more]
sp\|Q38896\|CSP4_ARATH	4.9e-15	52.78	Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 P...	[more]

BLAST of BhiUN179G36 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L4X7\|A0A0A0L4X7_CUCSA	9.5e-40	95.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002765 PE=4 SV=1	[more]
tr\|A0A1S3BKK1\|A0A1S3BKK1_CUCME	4.4e-37	100.00	cold shock domain-containing protein 3 OS=Cucumis melo OX=3656 GN=LOC103490693 P...	[more]
tr\|E5RDD6\|E5RDD6_CUCME	4.4e-37	100.00	Cold-shock DNA-binding family protein OS=Cucumis melo subsp. melo OX=412675 PE=4...	[more]
tr\|K7K6H1\|K7K6H1_SOYBN	9.2e-27	67.14	Uncharacterized protein OS=Glycine max OX=3847 GN=100806783 PE=4 SV=1	[more]
tr\|A0A1S3UN22\|A0A1S3UN22_VIGRR	9.2e-27	51.72	cold shock protein 1 OS=Vigna radiata var. radiata OX=3916 GN=LOC106767041 PE=4 ...	[more]

BLAST of BhiUN179G36 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146143.1	1.4e-39	95.74	PREDICTED: cold shock domain-containing protein 3-like [Cucumis sativus] >KGN556...	[more]
XP_022965328.1	7.1e-39	95.71	cold shock domain-containing protein 3-like [Cucurbita maxima]	[more]
XP_023551806.1	7.1e-39	95.71	cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022923189.1	3.5e-38	95.68	cold shock domain-containing protein 3-like [Cucurbita moschata]	[more]
XP_022948847.1	1.3e-37	92.14	cold shock protein 1-like [Cucurbita moschata] >XP_022948857.1 cold shock protei...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0003676	nucleic acid binding
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR012340	NA-bd_OB-fold
IPR036875	Znf_CCHC_sf
IPR019844	Cold-shock_CS
IPR001878	Znf_CCHC
IPR011129	CSD
IPR002059	CSP_DNA-bd

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
BhiUN179M36	BhiUN179M36	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01228	EGGSHELL	coord: 198..208 score: 38.64 coord: 170..185 score: 49.22 coord: 86..97 score: 45.83 coord: 234..252 score: 46.05
None	No IPR available	GENE3D	G3DSA:2.40.50.140		coord: 1..70 e-value: 6.3E-25 score: 88.9
None	No IPR available	GENE3D	G3DSA:4.10.60.10		coord: 103..146 e-value: 6.0E-7 score: 31.3
None	No IPR available	GENE3D	G3DSA:4.10.60.10		coord: 248..269 e-value: 8.1E-8 score: 33.8 coord: 179..204 e-value: 1.5E-5 score: 26.5 coord: 205..233 e-value: 6.1E-8 score: 34.2 coord: 147..173 e-value: 2.8E-7 score: 32.1
None	No IPR available	PANTHER	PTHR11544	COLD SHOCK DOMAIN CONTAINING PROTEINS	coord: 179..239
None	No IPR available	PANTHER	PTHR11544	COLD SHOCK DOMAIN CONTAINING PROTEINS	coord: 1..192 coord: 155..211
None	No IPR available	PANTHER	PTHR11544:SF50	SUBFAMILY NOT NAMED	coord: 241..267 coord: 179..239
None	No IPR available	PANTHER	PTHR11544:SF50	SUBFAMILY NOT NAMED	coord: 1..192 coord: 155..211
None	No IPR available	PANTHER	PTHR11544	COLD SHOCK DOMAIN CONTAINING PROTEINS	coord: 241..267
IPR002059	Cold-shock protein, DNA-binding	PRINTS	PR00050	COLDSHOCK	coord: 29..38 score: 59.44 coord: 8..23 score: 61.03 coord: 44..62 score: 40.09
IPR002059	Cold-shock protein, DNA-binding	PFAM	PF00313	CSD	coord: 7..70 e-value: 1.0E-22 score: 79.6
IPR002059	Cold-shock protein, DNA-binding	CDD	cd04458	CSP_CDS	coord: 7..69 e-value: 1.13475E-23 score: 90.7158
IPR011129	Cold shock domain	SMART	SM00357	csp_8	coord: 7..72 e-value: 1.5E-24 score: 97.6
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 121..137 e-value: 2.4E-4 score: 30.5 coord: 210..226 e-value: 2.5E-5 score: 33.7 coord: 182..198 e-value: 4.0E-4 score: 29.7 coord: 150..166 e-value: 2.6E-5 score: 33.7 coord: 251..267 e-value: 5.9E-6 score: 35.8
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 210..225 e-value: 3.6E-7 score: 29.9 coord: 182..196 e-value: 3.4E-6 score: 26.8 coord: 150..165 e-value: 8.7E-8 score: 31.8 coord: 250..266 e-value: 5.1E-8 score: 32.5 coord: 121..136 e-value: 1.4E-6 score: 28.0
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 211..226 score: 10.938
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 252..267 score: 11.433
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 122..137 score: 11.004
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 183..196 score: 10.477
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 151..166 score: 11.087
IPR019844	Cold-shock conserved site	PROSITE	PS00352	COLD_SHOCK	coord: 19..38
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	coord: 233..267
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	coord: 174..227
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	coord: 112..168
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	coord: 4..74

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
BhiUN179G36	MELO3C013764	Melon (DHL92) v3.5.1	mewgoB561
BhiUN179G36	ClCG10G000710	Watermelon (Charleston Gray)	wcgwgoB131
BhiUN179G36	CSPI03G00720	Wild cucumber (PI 183967)	cpiwgoB340
BhiUN179G36	CmaCh16G012390	Cucurbita maxima (Rimu)	cmawgoB0450
BhiUN179G36	CmaCh06G005770	Cucurbita maxima (Rimu)	cmawgoB1042
BhiUN179G36	CmoCh06G005820	Cucurbita moschata (Rifu)	cmowgoB1036
BhiUN179G36	CmoCh16G012850	Cucurbita moschata (Rifu)	cmowgoB0447
BhiUN179G36	Lsi07G011020	Bottle gourd (USVL1VR-Ls)	lsiwgoB575
BhiUN179G36	Cp4.1LG08g09210	Cucurbita pepo (Zucchini)	cpewgoB1137
BhiUN179G36	Cp4.1LG14g10210	Cucurbita pepo (Zucchini)	cpewgoB0308
BhiUN179G36	CsGy3G000690	Cucumber (Gy14) v2	cgybwgoB327
BhiUN179G36	MELO3C013764.2	Melon (DHL92) v3.6.1	medwgoB565
BhiUN179G36	Carg16263	Silver-seed gourd	carwgoB0798
BhiUN179G36	Carg19474	Silver-seed gourd	carwgoB0517
BhiUN179G36	CsaV3_3G000760	Cucumber (Chinese Long) v3	cucwgoB343
BhiUN179G36	Cla008899	Watermelon (97103) v1	wgowmB575
BhiUN179G36	Cla97C10G185270	Watermelon (97103) v2	wgowmbB548

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
BhiUN179G36	Cucumber (Gy14) v1	cgywgoB655
BhiUN179G36	Cucumber (Chinese Long) v2	cuwgoB337