CsaV3_2G036070 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G036070
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	disease resistance protein RGA2-like
Location	chr2 : 24238535 .. 24238723 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGATTTCCTATGGACTTTTGCTGTGGAAGAAATGTTGAAGAAGGTGTTGAAGGTTGCAGGGGAGCAAACTCGACTAGCATGGGGCTTCCAGGAACATCTCTCCAACCTCCAAAAATGGCTACTCAAGGCTGAAGCTTTCTTACGCGATATCAACATGAGAAAATTACATCTTGATATTCTGTGA

mRNA sequence

ATGGCTGATTTCCTATGGACTTTTGCTGTGGAAGAAATGTTGAAGAAGGTGTTGAAGGTTGCAGGGGAGCAAACTCGACTAGCATGGGGCTTCCAGGAACATCTCTCCAACCTCCAAAAATGGCTACTCAAGGCTGAAGCTTTCTTACGCGATATCAACATGAGAAAATTACATCTTGATATTCTGTGA

Coding sequence (CDS)

ATGGCTGATTTCCTATGGACTTTTGCTGTGGAAGAAATGTTGAAGAAGGTGTTGAAGGTTGCAGGGGAGCAAACTCGACTAGCATGGGGCTTCCAGGAACATCTCTCCAACCTCCAAAAATGGCTACTCAAGGCTGAAGCTTTCTTACGCGATATCAACATGAGAAAATTACATCTTGATATTCTGTGA

Protein sequence

MADFLWTFAVEEMLKKVLKVAGEQTRLAWGFQEHLSNLQKWLLKAEAFLRDINMRKLHLDIL

Homology

[Close]

BLAST of CsaV3_2G036070 vs. NCBI nr
Match: KGN63367.1 (hypothetical protein Csa_2G433330 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 6.1e-26
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 1  MADFLWTFAVEEMLKKVLKVAGEQTRLAWGFQEHLSNLQKWLLKAEAFLRDINMRKLHLD 60
          MADFLWTFAVEEMLKKVLKVAGEQT LAWGFQEHLSNLQKWLLKAEAFLRDINMRKLHLD
Sbjct: 1  MADFLWTFAVEEMLKKVLKVAGEQTGLAWGFQEHLSNLQKWLLKAEAFLRDINMRKLHLD 60

Query: 61 IL 63
          IL
Sbjct: 61 IL 62

[Close]

BLAST of CsaV3_2G036070 vs. NCBI nr
Match: KGN63381.1 (hypothetical protein Csa_2G435450 [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 3.1e-25
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 1  MADFLWTFAVEEMLKKVLKVAGEQTRLAWGFQEHLSNLQKWLLKAEAFLRDINMRKLHLD 60
          MADFLWTFAVEEMLKKVLKVAGEQT LAWGFQEHLSNLQKWLLKAEAFLRDINMRKLHLD
Sbjct: 1  MADFLWTFAVEEMLKKVLKVAGEQTGLAWGFQEHLSNLQKWLLKAEAFLRDINMRKLHLD 60

[Close]

BLAST of CsaV3_2G036070 vs. NCBI nr
Match: XP_004149742.2 (PREDICTED: disease resistance protein RGA2-like [Cucumis sativus] >KGN58559.1 hypothetical protein Csa_3G684170 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 3.2e-22
Identity = 54/59 (91.53%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 1  MADFLWTFAVEEMLKKVLKVAGEQTRLAWGFQEHLSNLQKWLLKAEAFLRDINMRKLHL 60
          MADFLWTFAVEEMLK VLKVAGEQT LAWGFQEHLSNLQKWLL A+AFLRDIN RKLHL
Sbjct: 1  MADFLWTFAVEEMLKNVLKVAGEQTGLAWGFQEHLSNLQKWLLNAQAFLRDINTRKLHL 59

[Close]

BLAST of CsaV3_2G036070 vs. NCBI nr
Match: XP_008462780.1 (PREDICTED: disease resistance protein RGA2-like [Cucumis melo])

HSP 1 Score: 109.8 bits (273), Expect = 3.5e-21
Identity = 53/60 (88.33%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1  MADFLWTFAVEEMLKKVLKVAGEQTRLAWGFQEHLSNLQKWLLKAEAFLRDINMRKLHLD 60
          M DFLWTFAVEEMLKKVLKVA EQT LAWGFQ+HLS LQKWLLKAEAFLRDIN RKLH D
Sbjct: 1  MGDFLWTFAVEEMLKKVLKVAQEQTGLAWGFQKHLSKLQKWLLKAEAFLRDINTRKLHHD 60

[Close]

BLAST of CsaV3_2G036070 vs. NCBI nr
Match: ABB91438.1 (R-FOM-2 [Cucumis melo])

HSP 1 Score: 107.8 bits (268), Expect = 1.3e-20
Identity = 52/60 (86.67%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1  MADFLWTFAVEEMLKKVLKVAGEQTRLAWGFQEHLSNLQKWLLKAEAFLRDINMRKLHLD 60
          M DFLWTFAVEEMLKKVLKVA EQT LAWGFQ+HLS LQKWLLKAEAFLR+IN RKLH D
Sbjct: 1  MGDFLWTFAVEEMLKKVLKVAREQTGLAWGFQKHLSKLQKWLLKAEAFLRNINTRKLHHD 60

[Close]

BLAST of CsaV3_2G036070 vs. TrEMBL
Match: tr|A0A0A0LRB8|A0A0A0LRB8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G433330 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 4.1e-26
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 1  MADFLWTFAVEEMLKKVLKVAGEQTRLAWGFQEHLSNLQKWLLKAEAFLRDINMRKLHLD 60
          MADFLWTFAVEEMLKKVLKVAGEQT LAWGFQEHLSNLQKWLLKAEAFLRDINMRKLHLD
Sbjct: 1  MADFLWTFAVEEMLKKVLKVAGEQTGLAWGFQEHLSNLQKWLLKAEAFLRDINMRKLHLD 60

Query: 61 IL 63
          IL
Sbjct: 61 IL 62

[Close]

BLAST of CsaV3_2G036070 vs. TrEMBL
Match: tr|A0A0A0LTP7|A0A0A0LTP7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G435450 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.0e-25
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 1  MADFLWTFAVEEMLKKVLKVAGEQTRLAWGFQEHLSNLQKWLLKAEAFLRDINMRKLHLD 60
          MADFLWTFAVEEMLKKVLKVAGEQT LAWGFQEHLSNLQKWLLKAEAFLRDINMRKLHLD
Sbjct: 1  MADFLWTFAVEEMLKKVLKVAGEQTGLAWGFQEHLSNLQKWLLKAEAFLRDINMRKLHLD 60

[Close]

BLAST of CsaV3_2G036070 vs. TrEMBL
Match: tr|A0A0A0LCB5|A0A0A0LCB5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G684170 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.1e-22
Identity = 54/59 (91.53%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 1  MADFLWTFAVEEMLKKVLKVAGEQTRLAWGFQEHLSNLQKWLLKAEAFLRDINMRKLHL 60
          MADFLWTFAVEEMLK VLKVAGEQT LAWGFQEHLSNLQKWLL A+AFLRDIN RKLHL
Sbjct: 1  MADFLWTFAVEEMLKNVLKVAGEQTGLAWGFQEHLSNLQKWLLNAQAFLRDINTRKLHL 59

[Close]

BLAST of CsaV3_2G036070 vs. TrEMBL
Match: tr|A0A1S3CHQ5|A0A1S3CHQ5_CUCME (disease resistance protein RGA2-like OS=Cucumis melo OX=3656 GN=LOC103501070 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.3e-21
Identity = 53/60 (88.33%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1  MADFLWTFAVEEMLKKVLKVAGEQTRLAWGFQEHLSNLQKWLLKAEAFLRDINMRKLHLD 60
          M DFLWTFAVEEMLKKVLKVA EQT LAWGFQ+HLS LQKWLLKAEAFLRDIN RKLH D
Sbjct: 1  MGDFLWTFAVEEMLKKVLKVAQEQTGLAWGFQKHLSKLQKWLLKAEAFLRDINTRKLHHD 60

[Close]

BLAST of CsaV3_2G036070 vs. TrEMBL
Match: tr|Q2V727|Q2V727_CUCME (R-FOM-2 OS=Cucumis melo OX=3656 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 8.8e-21
Identity = 52/60 (86.67%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1  MADFLWTFAVEEMLKKVLKVAGEQTRLAWGFQEHLSNLQKWLLKAEAFLRDINMRKLHLD 60
          M DFLWTFAVEEMLKKVLKVA EQT LAWGFQ+HLS LQKWLLKAEAFLR+IN RKLH D
Sbjct: 1  MGDFLWTFAVEEMLKKVLKVAREQTGLAWGFQKHLSKLQKWLLKAEAFLRNINTRKLHHD 60

The following BLAST results are available for this feature:

BLAST of CsaV3_2G036070 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63367.1	6.1e-26	98.39	hypothetical protein Csa_2G433330 [Cucumis sativus]	[more]
KGN63381.1	3.1e-25	98.33	hypothetical protein Csa_2G435450 [Cucumis sativus]	[more]
XP_004149742.2	3.2e-22	91.53	PREDICTED: disease resistance protein RGA2-like [Cucumis sativus] >KGN58559.1 hy...	[more]
XP_008462780.1	3.5e-21	88.33	PREDICTED: disease resistance protein RGA2-like [Cucumis melo]	[more]
ABB91438.1	1.3e-20	86.67	R-FOM-2 [Cucumis melo]	[more]

BLAST of CsaV3_2G036070 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G036070 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G036070 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LRB8\|A0A0A0LRB8_CUCSA	4.1e-26	98.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G433330 PE=4 SV=1	[more]
tr\|A0A0A0LTP7\|A0A0A0LTP7_CUCSA	2.0e-25	98.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G435450 PE=4 SV=1	[more]
tr\|A0A0A0LCB5\|A0A0A0LCB5_CUCSA	2.1e-22	91.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G684170 PE=3 SV=1	[more]
tr\|A0A1S3CHQ5\|A0A1S3CHQ5_CUCME	2.3e-21	88.33	disease resistance protein RGA2-like OS=Cucumis melo OX=3656 GN=LOC103501070 PE=...	[more]
tr\|Q2V727\|Q2V727_CUCME	8.8e-21	86.67	R-FOM-2 OS=Cucumis melo OX=3656 PE=3 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0043531	ADP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G036070.1	CsaV3_2G036070.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_2G036070	CsGy2G026890	Cucumber (Gy14) v2	cgybcucB065
CsaV3_2G036070	Bhi10G001243	Wax gourd	cucwgoB180

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G036070	Silver-seed gourd	carcucB1100
CsaV3_2G036070	Cucumber (Gy14) v1	cgycucB401
CsaV3_2G036070	Cucurbita maxima (Rimu)	cmacucB0653
CsaV3_2G036070	Cucurbita maxima (Rimu)	cmacucB0703
CsaV3_2G036070	Cucurbita moschata (Rifu)	cmocucB0639
CsaV3_2G036070	Cucurbita moschata (Rifu)	cmocucB0689
CsaV3_2G036070	Cucurbita pepo (Zucchini)	cpecucB0337
CsaV3_2G036070	Cucurbita pepo (Zucchini)	cpecucB0881
CsaV3_2G036070	Wild cucumber (PI 183967)	cpicucB081
CsaV3_2G036070	Bottle gourd (USVL1VR-Ls)	cuclsiB105
CsaV3_2G036070	Melon (DHL92) v3.5.1	cucmeB103
CsaV3_2G036070	Melon (DHL92) v3.6.1	cucmedB096
CsaV3_2G036070	Watermelon (Charleston Gray)	cucwcgB138
CsaV3_2G036070	Watermelon (97103) v1	cucwmB156
CsaV3_2G036070	Watermelon (97103) v2	cucwmbB125
CsaV3_2G036070	Wax gourd	cucwgoB192