CsGy2G026890 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G026890
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	putative disease resistance protein RGA3
Location	Chr2 : 34440687 .. 34440875 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGATTTCCTATGGACTTTTGCTGTGGAAGAAATGTTGAAGAAGGTGTTGAAGGTTGCAGGGGAGCAAACTCGACTAGCATGGGGCTTCCAGGAACATCTCTCCAACCTCCAAAAATGGCTACTCAAGGCTGAAGCTTTCTTACGCGATATCAACATGAGAAAATTACATCTTGATATTCTGTGA

mRNA sequence

ATGGCTGATTTCCTATGGACTTTTGCTGTGGAAGAAATGTTGAAGAAGGTGTTGAAGGTTGCAGGGGAGCAAACTCGACTAGCATGGGGCTTCCAGGAACATCTCTCCAACCTCCAAAAATGGCTACTCAAGGCTGAAGCTTTCTTACGCGATATCAACATGAGAAAATTACATCTTGATATTCTGTGA

Coding sequence (CDS)

ATGGCTGATTTCCTATGGACTTTTGCTGTGGAAGAAATGTTGAAGAAGGTGTTGAAGGTTGCAGGGGAGCAAACTCGACTAGCATGGGGCTTCCAGGAACATCTCTCCAACCTCCAAAAATGGCTACTCAAGGCTGAAGCTTTCTTACGCGATATCAACATGAGAAAATTACATCTTGATATTCTGTGA

Protein sequence

MADFLWTFAVEEMLKKVLKVAGEQTRLAWGFQEHLSNLQKWLLKAEAFLRDINMRKLHLDIL

Homology

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BLAST of CsGy2G026890 vs. NCBI nr
Match: KGN63367.1 (hypothetical protein Csa_2G433330 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 7.9e-26
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 1  MADFLWTFAVEEMLKKVLKVAGEQTRLAWGFQEHLSNLQKWLLKAEAFLRDINMRKLHLD 60
          MADFLWTFAVEEMLKKVLKVAGEQT LAWGFQEHLSNLQKWLLKAEAFLRDINMRKLHLD
Sbjct: 1  MADFLWTFAVEEMLKKVLKVAGEQTGLAWGFQEHLSNLQKWLLKAEAFLRDINMRKLHLD 60

Query: 61 IL 63
          IL
Sbjct: 61 IL 62

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BLAST of CsGy2G026890 vs. NCBI nr
Match: KGN63381.1 (hypothetical protein Csa_2G435450 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 5.1e-25
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 1  MADFLWTFAVEEMLKKVLKVAGEQTRLAWGFQEHLSNLQKWLLKAEAFLRDINMRKLHLD 60
          MADFLWTFAVEEMLKKVLKVAGEQT LAWGFQEHLSNLQKWLLKAEAFLRDINMRKLHLD
Sbjct: 1  MADFLWTFAVEEMLKKVLKVAGEQTGLAWGFQEHLSNLQKWLLKAEAFLRDINMRKLHLD 60

[Close]

BLAST of CsGy2G026890 vs. NCBI nr
Match: XP_004149742.2 (PREDICTED: disease resistance protein RGA2-like [Cucumis sativus] >KGN58559.1 hypothetical protein Csa_3G684170 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 4.1e-22
Identity = 54/59 (91.53%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 1  MADFLWTFAVEEMLKKVLKVAGEQTRLAWGFQEHLSNLQKWLLKAEAFLRDINMRKLHL 60
          MADFLWTFAVEEMLK VLKVAGEQT LAWGFQEHLSNLQKWLL A+AFLRDIN RKLHL
Sbjct: 1  MADFLWTFAVEEMLKNVLKVAGEQTGLAWGFQEHLSNLQKWLLNAQAFLRDINTRKLHL 59

[Close]

BLAST of CsGy2G026890 vs. NCBI nr
Match: XP_008462780.1 (PREDICTED: disease resistance protein RGA2-like [Cucumis melo])

HSP 1 Score: 109.0 bits (271), Expect = 5.9e-21
Identity = 53/60 (88.33%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1  MADFLWTFAVEEMLKKVLKVAGEQTRLAWGFQEHLSNLQKWLLKAEAFLRDINMRKLHLD 60
          M DFLWTFAVEEMLKKVLKVA EQT LAWGFQ+HLS LQKWLLKAEAFLRDIN RKLH D
Sbjct: 1  MGDFLWTFAVEEMLKKVLKVAQEQTGLAWGFQKHLSKLQKWLLKAEAFLRDINTRKLHHD 60

[Close]

BLAST of CsGy2G026890 vs. NCBI nr
Match: ABB91438.1 (R-FOM-2 [Cucumis melo])

HSP 1 Score: 107.1 bits (266), Expect = 2.2e-20
Identity = 52/60 (86.67%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1  MADFLWTFAVEEMLKKVLKVAGEQTRLAWGFQEHLSNLQKWLLKAEAFLRDINMRKLHLD 60
          M DFLWTFAVEEMLKKVLKVA EQT LAWGFQ+HLS LQKWLLKAEAFLR+IN RKLH D
Sbjct: 1  MGDFLWTFAVEEMLKKVLKVAREQTGLAWGFQKHLSKLQKWLLKAEAFLRNINTRKLHHD 60

[Close]

BLAST of CsGy2G026890 vs. TrEMBL
Match: tr|A0A0A0LRB8|A0A0A0LRB8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G433330 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 5.2e-26
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 1  MADFLWTFAVEEMLKKVLKVAGEQTRLAWGFQEHLSNLQKWLLKAEAFLRDINMRKLHLD 60
          MADFLWTFAVEEMLKKVLKVAGEQT LAWGFQEHLSNLQKWLLKAEAFLRDINMRKLHLD
Sbjct: 1  MADFLWTFAVEEMLKKVLKVAGEQTGLAWGFQEHLSNLQKWLLKAEAFLRDINMRKLHLD 60

Query: 61 IL 63
          IL
Sbjct: 61 IL 62

[Close]

BLAST of CsGy2G026890 vs. TrEMBL
Match: tr|A0A0A0LTP7|A0A0A0LTP7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G435450 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 3.4e-25
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 1  MADFLWTFAVEEMLKKVLKVAGEQTRLAWGFQEHLSNLQKWLLKAEAFLRDINMRKLHLD 60
          MADFLWTFAVEEMLKKVLKVAGEQT LAWGFQEHLSNLQKWLLKAEAFLRDINMRKLHLD
Sbjct: 1  MADFLWTFAVEEMLKKVLKVAGEQTGLAWGFQEHLSNLQKWLLKAEAFLRDINMRKLHLD 60

[Close]

BLAST of CsGy2G026890 vs. TrEMBL
Match: tr|A0A0A0LCB5|A0A0A0LCB5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G684170 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.7e-22
Identity = 54/59 (91.53%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 1  MADFLWTFAVEEMLKKVLKVAGEQTRLAWGFQEHLSNLQKWLLKAEAFLRDINMRKLHL 60
          MADFLWTFAVEEMLK VLKVAGEQT LAWGFQEHLSNLQKWLL A+AFLRDIN RKLHL
Sbjct: 1  MADFLWTFAVEEMLKNVLKVAGEQTGLAWGFQEHLSNLQKWLLNAQAFLRDINTRKLHL 59

[Close]

BLAST of CsGy2G026890 vs. TrEMBL
Match: tr|A0A1S3CHQ5|A0A1S3CHQ5_CUCME (disease resistance protein RGA2-like OS=Cucumis melo OX=3656 GN=LOC103501070 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.9e-21
Identity = 53/60 (88.33%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1  MADFLWTFAVEEMLKKVLKVAGEQTRLAWGFQEHLSNLQKWLLKAEAFLRDINMRKLHLD 60
          M DFLWTFAVEEMLKKVLKVA EQT LAWGFQ+HLS LQKWLLKAEAFLRDIN RKLH D
Sbjct: 1  MGDFLWTFAVEEMLKKVLKVAQEQTGLAWGFQKHLSKLQKWLLKAEAFLRDINTRKLHHD 60

[Close]

BLAST of CsGy2G026890 vs. TrEMBL
Match: tr|Q2V727|Q2V727_CUCME (R-FOM-2 OS=Cucumis melo OX=3656 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-20
Identity = 52/60 (86.67%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1  MADFLWTFAVEEMLKKVLKVAGEQTRLAWGFQEHLSNLQKWLLKAEAFLRDINMRKLHLD 60
          M DFLWTFAVEEMLKKVLKVA EQT LAWGFQ+HLS LQKWLLKAEAFLR+IN RKLH D
Sbjct: 1  MGDFLWTFAVEEMLKKVLKVAREQTGLAWGFQKHLSKLQKWLLKAEAFLRNINTRKLHHD 60

The following BLAST results are available for this feature:

BLAST of CsGy2G026890 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63367.1	7.9e-26	98.39	hypothetical protein Csa_2G433330 [Cucumis sativus]	[more]
KGN63381.1	5.1e-25	98.33	hypothetical protein Csa_2G435450 [Cucumis sativus]	[more]
XP_004149742.2	4.1e-22	91.53	PREDICTED: disease resistance protein RGA2-like [Cucumis sativus] >KGN58559.1 hy...	[more]
XP_008462780.1	5.9e-21	88.33	PREDICTED: disease resistance protein RGA2-like [Cucumis melo]	[more]
ABB91438.1	2.2e-20	86.67	R-FOM-2 [Cucumis melo]	[more]

BLAST of CsGy2G026890 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy2G026890 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy2G026890 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LRB8\|A0A0A0LRB8_CUCSA	5.2e-26	98.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G433330 PE=4 SV=1	[more]
tr\|A0A0A0LTP7\|A0A0A0LTP7_CUCSA	3.4e-25	98.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G435450 PE=4 SV=1	[more]
tr\|A0A0A0LCB5\|A0A0A0LCB5_CUCSA	2.7e-22	91.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G684170 PE=3 SV=1	[more]
tr\|A0A1S3CHQ5\|A0A1S3CHQ5_CUCME	3.9e-21	88.33	disease resistance protein RGA2-like OS=Cucumis melo OX=3656 GN=LOC103501070 PE=...	[more]
tr\|Q2V727\|Q2V727_CUCME	1.5e-20	86.67	R-FOM-2 OS=Cucumis melo OX=3656 PE=3 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0043531	ADP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G026890.1	CsGy2G026890.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy2G026890	Csa2G433330	Cucumber (Chinese Long) v2	cgybcuB057
CsGy2G026890	CsaV3_2G036070	Cucumber (Chinese Long) v3	cgybcucB065
CsGy2G026890	Cla97C02G034360	Watermelon (97103) v2	cgybwmbB116
CsGy2G026890	Bhi10G001243	Wax gourd	cgybwgoB168

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy2G026890	Cucurbita maxima (Rimu)	cgybcmaB220
CsGy2G026890	Cucurbita maxima (Rimu)	cgybcmaB231
CsGy2G026890	Cucurbita moschata (Rifu)	cgybcmoB211
CsGy2G026890	Cucurbita moschata (Rifu)	cgybcmoB222
CsGy2G026890	Cucurbita pepo (Zucchini)	cgybcpeB196
CsGy2G026890	Cucurbita pepo (Zucchini)	cgybcpeB242
CsGy2G026890	Bottle gourd (USVL1VR-Ls)	cgyblsiB087
CsGy2G026890	Melon (DHL92) v3.5.1	cgybmeB083
CsGy2G026890	Melon (DHL92) v3.6.1	cgybmedB080
CsGy2G026890	Watermelon (Charleston Gray)	cgybwcgB120
CsGy2G026890	Watermelon (97103) v1	cgybwmB136
CsGy2G026890	Wild cucumber (PI 183967)	cgybcpiB057
CsGy2G026890	Silver-seed gourd	carcgybB1036
CsGy2G026890	Wax gourd	cgybwgoB180