CsaV3_2G030200 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G030200
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Tetratricopeptide repeat-like superfamily protein
Location	chr2 : 19819270 .. 19821248 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTAAAAAATATTTATAAATATAGGAACGATATATATGAAAGGTGACTATAAACTAATATAATAAATAGTGATAAATTAATATTGAAATAGTAGTCTATTTGTCAATTGTTATTCATCTCGACTAGATAGAGTGTGATATTTTTTAAGGGCTTAAATAATAGTTAGCTTAAAAAAGAAAGGAGAAGAAAAGTTTTACTTTTAGAAAGAAAAAAATCATTTAAACGAAGCAACATCTGCCCAAATTGATTGAAATTATAATTTCCTATTAACTCTGACCGTCGCTGTAGAGTTGACGGCAAAATTAAACCGCCGCTCTAAGCAGTCCCGCCTCCGATCTTCTCCAATCCCTGACTCTGTACAGATCCACTTTTGATCGTATTCGGAGTTTATCCGATCCCCGGAATTAATCGAAAGCACAGTGAAAGAAATTGGCTGCACGCAGTTCTTTCAGAGATCGATAAACATGGTGACCGACATACTTCTTCAAATTGCTCTCATCCTCGTAATGGTCGTCATGTTCCTCGCTATGCACAATATTCCGCAGAGATACTTCGCCAAGCTCCGATTGCGCTTCCGATCCAACGTCGAATCTAAACGCCACTTCGTGAGAGGCGCTCAGCTTCTCGCTCGAGCGAGATCTGCTCCGTCGCGCTCCTCGGCCACATCGTTAGCAGAAGAAGTCGTAGCGGAAGCCAATAAGGCCATAGCTCTGGATCCTAAGGATGCCGCCGCTCACATCCTCAAAGCTTTGGCTCTCGACACTCAAGGATTCAAAACCTCTGCTCTGGAATCGCTCGATACAGCTCTATCGCCGCTCGTCGCTAAGTCGCTCAGCGATGAAGAACGAGGCGACGCGTTGTTCAAGCGAGCTGAGTTGAAGATGTCCACGAATCGACGAGCCCTAGTTGACTCGGCTTTGGCTGATTTGACCGAGTCCGTGACACTGAGTCAGAATGCAAATTCCTACTATTGGTTGGGGAAATGCTATGAGACGAAGAAACTGAGAGAAGAGGCCAAGAAAGCATATGAAGAAGCTTTGAATATCGAACCACGATTATCCAATGCTAGGGAGGCATTGGAACGTCTATCATCATCGCAATCAAGCTGATGTCTACTGTGATCTATGGAATGTCAACGCTAGAAGATAAGAGCATCTTTCAATTTTTCCAGGTCCAAATATCTCCTCCATTTTCGCTGATTCTTGCTAATGCCTTCCCTTAAGCCGTATAACGATTGAGATGCTGAATTGGCTCGTGAGATGAAATCCTATCTCCGATTCCCATCTCCAAGATAGGCGTTTGGAATGGGGTTTAATATTTACTTAGTTTCCTTGTCTTTGATTTAGTCTGTTGATTTACCGTAGTTTTAGTCGTAATTTATGTAAAATGAGGGATTGGAACAAACCCAGAAAGAAAATTAGTAATTAGCACGGTTAATTTTCAAAGTAGCTTTGCTTCTCTGATCCTCAAGAAATAAATTCGAAAGTTCTCAAGACGTTTATCTGATTCTGACTTTTGTAGGAAGACGAACCAAGCTTGGCTTCAAATGTCAGATGATTAATGGAAACTAATATTTCTCTTGCAGTAGATTCACCCTTTTCAATTCCAAGAGAATTTAAGTATTTGCACATCTCATCAAATTGTGCAAATCAAAACTTGTTAAGTTTTACTTTCACTTTTTGTTGGATGCCCAAAGATGAGCCATGCCTGCATCCATGGGTTCATTTGACAAACACAACCATATTTGAATTACCACTTCGAGGAATCTTTATCAATTTTTGTTTGAAGGAATATTATGGGCTTCCGAACAAAGCTCGTTATAGTCAAAAGAATGATTACTCAAACACATCACTGTCTATGGGTTGTTTGAATTATTTGGAAAAATATTTTGGGAATTGTTTTTTCTTTTTTCAAATTTATTGTCATATGAAGATTAATCCATTCATTCACCAAGTCCACCTCAACCACAGATTAAAAT

mRNA sequence

ATGGTGACCGACATACTTCTTCAAATTGCTCTCATCCTCGTAATGGTCGTCATGTTCCTCGCTATGCACAATATTCCGCAGAGATACTTCGCCAAGCTCCGATTGCGCTTCCGATCCAACGTCGAATCTAAACGCCACTTCGTGAGAGGCGCTCAGCTTCTCGCTCGAGCGAGATCTGCTCCGTCGCGCTCCTCGGCCACATCGTTAGCAGAAGAAGTCGTAGCGGAAGCCAATAAGGCCATAGCTCTGGATCCTAAGGATGCCGCCGCTCACATCCTCAAAGCTTTGGCTCTCGACACTCAAGGATTCAAAACCTCTGCTCTGGAATCGCTCGATACAGCTCTATCGCCGCTCGTCGCTAAGTCGCTCAGCGATGAAGAACGAGGCGACGCGTTGTTCAAGCGAGCTGAGTTGAAGATGTCCACGAATCGACGAGCCCTAGTTGACTCGGCTTTGGCTGATTTGACCGAGTCCGTGACACTGAGTCAGAATGCAAATTCCTACTATTGGTTGGGGAAATGCTATGAGACGAAGAAACTGAGAGAAGAGGCCAAGAAAGCATATGAAGAAGCTTTGAATATCGAACCACGATTATCCAATGCTAGGGAGGCATTGGAACGTCTATCATCATCGCAATCAAGCTGA

Coding sequence (CDS)

ATGGTGACCGACATACTTCTTCAAATTGCTCTCATCCTCGTAATGGTCGTCATGTTCCTCGCTATGCACAATATTCCGCAGAGATACTTCGCCAAGCTCCGATTGCGCTTCCGATCCAACGTCGAATCTAAACGCCACTTCGTGAGAGGCGCTCAGCTTCTCGCTCGAGCGAGATCTGCTCCGTCGCGCTCCTCGGCCACATCGTTAGCAGAAGAAGTCGTAGCGGAAGCCAATAAGGCCATAGCTCTGGATCCTAAGGATGCCGCCGCTCACATCCTCAAAGCTTTGGCTCTCGACACTCAAGGATTCAAAACCTCTGCTCTGGAATCGCTCGATACAGCTCTATCGCCGCTCGTCGCTAAGTCGCTCAGCGATGAAGAACGAGGCGACGCGTTGTTCAAGCGAGCTGAGTTGAAGATGTCCACGAATCGACGAGCCCTAGTTGACTCGGCTTTGGCTGATTTGACCGAGTCCGTGACACTGAGTCAGAATGCAAATTCCTACTATTGGTTGGGGAAATGCTATGAGACGAAGAAACTGAGAGAAGAGGCCAAGAAAGCATATGAAGAAGCTTTGAATATCGAACCACGATTATCCAATGCTAGGGAGGCATTGGAACGTCTATCATCATCGCAATCAAGCTGA

Protein sequence

MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSNVESKRHFVRGAQLLARARSAPSRSSATSLAEEVVAEANKAIALDPKDAAAHILKALALDTQGFKTSALESLDTALSPLVAKSLSDEERGDALFKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYETKKLREEAKKAYEEALNIEPRLSNAREALERLSSSQSS

Homology

[Close]

BLAST of CsaV3_2G030200 vs. NCBI nr
Match: XP_004152601.1 (PREDICTED: uncharacterized protein LOC101214199 [Cucumis sativus] >KGN62747.1 hypothetical protein Csa_2G370460 [Cucumis sativus])

HSP 1 Score: 379.0 bits (972), Expect = 1.1e-101
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0


Query: 1   MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSNVESKRHFVRGAQLLARARSA 60
           MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSNVESKRHFVRGAQLLARARSA
Sbjct: 1   MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSNVESKRHFVRGAQLLARARSA 60

Query: 61  PSRSSATSLAEEVVAEANKAIALDPKDAAAHILKALALDTQGFKTSALESLDTALSPLVA 120
           PSRSSATSLAEEVVAEANKAIALDPKDAAAHILKALALDTQGFKTSALESLDTALSPLVA
Sbjct: 61  PSRSSATSLAEEVVAEANKAIALDPKDAAAHILKALALDTQGFKTSALESLDTALSPLVA 120

Query: 121 KSLSDEERGDALFKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYETKKL 180
           KSLSDEERGDALFKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYETKKL
Sbjct: 121 KSLSDEERGDALFKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYETKKL 180

Query: 181 REEAKKAYEEALNIEPRLSNAREALERLSSSQSS 215
           REEAKKAYEEALNIEPRLSNAREALERLSSSQSS
Sbjct: 181 REEAKKAYEEALNIEPRLSNAREALERLSSSQSS 214

[Close]

BLAST of CsaV3_2G030200 vs. NCBI nr
Match: XP_008444918.1 (PREDICTED: uncharacterized protein LOC103488119 [Cucumis melo])

HSP 1 Score: 370.5 bits (950), Expect = 3.7e-99
Identity = 209/211 (99.05%), Postives = 209/211 (99.05%), Query Frame = 0


Query: 1   MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSNVESKRHFVRGAQLLARARSA 60
           MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSNVESKRHFVRGAQLLARARSA
Sbjct: 1   MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSNVESKRHFVRGAQLLARARSA 60

Query: 61  PSRSSATSLAEEVVAEANKAIALDPKDAAAHILKALALDTQGFKTSALESLDTALSPLVA 120
           PSRSSATSLAEEVVAEANKAIALDPKDAAAHILKALALD QGFKTSALESLDTALSPLVA
Sbjct: 61  PSRSSATSLAEEVVAEANKAIALDPKDAAAHILKALALDVQGFKTSALESLDTALSPLVA 120

Query: 121 KSLSDEERGDALFKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYETKKL 180
           KSLSDEERGDALFKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYE KKL
Sbjct: 121 KSLSDEERGDALFKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEMKKL 180

Query: 181 REEAKKAYEEALNIEPRLSNAREALERLSSS 212
           REEAKKAYEEALNIEPRLSNAREALERLSSS
Sbjct: 181 REEAKKAYEEALNIEPRLSNAREALERLSSS 211

[Close]

BLAST of CsaV3_2G030200 vs. NCBI nr
Match: XP_023537835.1 (uncharacterized protein LOC111798743 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 344.7 bits (883), Expect = 2.2e-91
Identity = 195/211 (92.42%), Postives = 203/211 (96.21%), Query Frame = 0


Query: 1   MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSNVESKRHFVRGAQLLARARSA 60
           MV DILLQIALILVMVVMFLAMHNIPQR+FAKLR RFRS+VESKRHFVRGAQLLARARSA
Sbjct: 1   MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSA 60

Query: 61  PSRSSATSLAEEVVAEANKAIALDPKDAAAHILKALALDTQGFKTSALESLDTALSPLVA 120
           PSRSSATSLAE+VVAEA+KAIALDPKDAAAHILKALALD QGFKTSALESLDTALSPL A
Sbjct: 61  PSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDIQGFKTSALESLDTALSPLAA 120

Query: 121 KSLSDEERGDALFKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYETKKL 180
           KSLS+EERGDAL+KRAELKMSTNRRA+VDSALADLTESVTLSQNAN+Y WLGKCYE KKL
Sbjct: 121 KSLSNEERGDALYKRAELKMSTNRRAVVDSALADLTESVTLSQNANAYCWLGKCYEMKKL 180

Query: 181 REEAKKAYEEALNIEPRLSNAREALERLSSS 212
           R EAKKAYEEALNIEPRLS AREALERLSSS
Sbjct: 181 RGEAKKAYEEALNIEPRLSKAREALERLSSS 211

[Close]

BLAST of CsaV3_2G030200 vs. NCBI nr
Match: XP_022951869.1 (uncharacterized protein LOC111454602 [Cucurbita moschata])

HSP 1 Score: 343.2 bits (879), Expect = 6.4e-91
Identity = 194/211 (91.94%), Postives = 202/211 (95.73%), Query Frame = 0


Query: 1   MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSNVESKRHFVRGAQLLARARSA 60
           MV DILLQIALILVMVVMFLAMHNIPQR+FAKLR RFRS+VESKRHFVRGAQLLARARSA
Sbjct: 1   MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSA 60

Query: 61  PSRSSATSLAEEVVAEANKAIALDPKDAAAHILKALALDTQGFKTSALESLDTALSPLVA 120
           PSRSSATSLAE+VVAEA+KAIALDPKDAAAHILKALALD QGFKTSALESLDTALSPL A
Sbjct: 61  PSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDIQGFKTSALESLDTALSPLAA 120

Query: 121 KSLSDEERGDALFKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYETKKL 180
           KSLS+EERGDAL+KRAELKMSTNRR +VDSALADLTESVTLSQNAN+Y WLGKCYE KKL
Sbjct: 121 KSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKL 180

Query: 181 REEAKKAYEEALNIEPRLSNAREALERLSSS 212
           R EAKKAYEEALNIEPRLS AREALERLSSS
Sbjct: 181 RGEAKKAYEEALNIEPRLSKAREALERLSSS 211

[Close]

BLAST of CsaV3_2G030200 vs. NCBI nr
Match: XP_023002879.1 (uncharacterized protein LOC111496615 [Cucurbita maxima])

HSP 1 Score: 342.8 bits (878), Expect = 8.4e-91
Identity = 193/211 (91.47%), Postives = 203/211 (96.21%), Query Frame = 0


Query: 1   MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSNVESKRHFVRGAQLLARARSA 60
           MV DILLQIALILVMVVMFLAMHNIPQR+FAKLR RFRS+VESKRHFVRGAQLLARARSA
Sbjct: 1   MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSA 60

Query: 61  PSRSSATSLAEEVVAEANKAIALDPKDAAAHILKALALDTQGFKTSALESLDTALSPLVA 120
           PSRSSATSLAE+VVAEA+KAIALDPKDAAAHILKALALD QGFKTSALESLDTALSPL A
Sbjct: 61  PSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDIQGFKTSALESLDTALSPLAA 120

Query: 121 KSLSDEERGDALFKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYETKKL 180
           KSLS+EERGDAL+KRAELKMSTNRRA+VDSA+ADLTESVTLSQNAN+Y WLGKCYE KKL
Sbjct: 121 KSLSNEERGDALYKRAELKMSTNRRAVVDSAMADLTESVTLSQNANAYCWLGKCYEMKKL 180

Query: 181 REEAKKAYEEALNIEPRLSNAREALERLSSS 212
           R EAKKAYEEALNIEPRLS AREALERLS+S
Sbjct: 181 RGEAKKAYEEALNIEPRLSKAREALERLSTS 211

[Close]

BLAST of CsaV3_2G030200 vs. TAIR10
Match: AT5G65520.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 144.1 bits (362), Expect = 1.0e-34
Identity = 89/201 (44.28%), Postives = 134/201 (66.67%), Query Frame = 0


Query: 3   TDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSNVESKRHFVRGAQLLARARSAPS 62
           T+ ++Q A++++ +VMF A+  + QR   K R + R+ ++++R  ++ ++LLARAR+ P 
Sbjct: 4   TETIIQGAILVLTLVMFWAIKYLSQRGLTKFRTKHRATLQTQRQLIQASRLLARARTTPK 63

Query: 63  RSSATSLAEEVVAEANKAIALDPKDAAAHILKALALDTQGFKTSALESLDTALSPLVAKS 122
           +S + SLA+  + EA+  IA+ P DAA HI++ALALD  G  TSAL+S D AL+    KS
Sbjct: 64  KSQSQSLAKTALTEADNVIAISPDDAAGHIVRALALDLLGHHTSALKSFDMALTYPRLKS 123

Query: 123 LSDEERGDALFKRAELKMSTNRRALVDSALADLTESVTL---SQNANSYYWLGKCYETKK 182
           LS  ER DAL KRAE+K++ NRR  +DSA+ DL E+V L   +  A  +  LG+CYE K 
Sbjct: 124 LSVGERADALVKRAEMKLAVNRRRRIDSAVEDLEEAVRLAAGTDTARLFRLLGECYEFKG 183

Query: 183 LREEAKKAYEEALNIEPRLSN 201
           L+E+A+ A+ EAL  +P   N
Sbjct: 184 LKEKAQWAFNEALKAQPSSVN 204

[Close]

BLAST of CsaV3_2G030200 vs. TrEMBL
Match: tr|A0A0A0LPL8|A0A0A0LPL8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G370460 PE=4 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 7.0e-102
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0


Query: 1   MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSNVESKRHFVRGAQLLARARSA 60
           MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSNVESKRHFVRGAQLLARARSA
Sbjct: 1   MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSNVESKRHFVRGAQLLARARSA 60

Query: 61  PSRSSATSLAEEVVAEANKAIALDPKDAAAHILKALALDTQGFKTSALESLDTALSPLVA 120
           PSRSSATSLAEEVVAEANKAIALDPKDAAAHILKALALDTQGFKTSALESLDTALSPLVA
Sbjct: 61  PSRSSATSLAEEVVAEANKAIALDPKDAAAHILKALALDTQGFKTSALESLDTALSPLVA 120

Query: 121 KSLSDEERGDALFKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYETKKL 180
           KSLSDEERGDALFKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYETKKL
Sbjct: 121 KSLSDEERGDALFKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYETKKL 180

Query: 181 REEAKKAYEEALNIEPRLSNAREALERLSSSQSS 215
           REEAKKAYEEALNIEPRLSNAREALERLSSSQSS
Sbjct: 181 REEAKKAYEEALNIEPRLSNAREALERLSSSQSS 214

[Close]

BLAST of CsaV3_2G030200 vs. TrEMBL
Match: tr|A0A1S3BC86|A0A1S3BC86_CUCME (uncharacterized protein LOC103488119 OS=Cucumis melo OX=3656 GN=LOC103488119 PE=4 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 2.5e-99
Identity = 209/211 (99.05%), Postives = 209/211 (99.05%), Query Frame = 0


Query: 1   MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSNVESKRHFVRGAQLLARARSA 60
           MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSNVESKRHFVRGAQLLARARSA
Sbjct: 1   MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSNVESKRHFVRGAQLLARARSA 60

Query: 61  PSRSSATSLAEEVVAEANKAIALDPKDAAAHILKALALDTQGFKTSALESLDTALSPLVA 120
           PSRSSATSLAEEVVAEANKAIALDPKDAAAHILKALALD QGFKTSALESLDTALSPLVA
Sbjct: 61  PSRSSATSLAEEVVAEANKAIALDPKDAAAHILKALALDVQGFKTSALESLDTALSPLVA 120

Query: 121 KSLSDEERGDALFKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYETKKL 180
           KSLSDEERGDALFKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYE KKL
Sbjct: 121 KSLSDEERGDALFKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEMKKL 180

Query: 181 REEAKKAYEEALNIEPRLSNAREALERLSSS 212
           REEAKKAYEEALNIEPRLSNAREALERLSSS
Sbjct: 181 REEAKKAYEEALNIEPRLSNAREALERLSSS 211

[Close]

BLAST of CsaV3_2G030200 vs. TrEMBL
Match: tr|A0A2P5EWC9|A0A2P5EWC9_9ROSA (N-terminal acetyltransferase A, auxiliary subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_143620 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 4.9e-63
Identity = 144/211 (68.25%), Postives = 174/211 (82.46%), Query Frame = 0


Query: 1   MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSNVESKRHFVRGAQLLARARSA 60
           MVTDILLQ  LILV +VMFLA+HNIPQ+ +AK R R R+ V+SKRHFV GAQLLARARSA
Sbjct: 3   MVTDILLQAGLILVSLVMFLALHNIPQKLYAKFRYRNRAQVQSKRHFVLGAQLLARARSA 62

Query: 61  PSRSSATSLAEEVVAEANKAIALDPKDAAAHILKALALDTQGFKTSALESLDTALSPLVA 120
            SRS+ TSLA+E +AEA ++IALDPKDAAAHILKAL LD QGFK+SA++S+D ALSPL  
Sbjct: 63  ESRSAVTSLAKEALAEAERSIALDPKDAAAHILKALVLDFQGFKSSAIDSIDAALSPLAV 122

Query: 121 KSLSDEERGDALFKRAELKMSTNRRALVDSALADLTESVTLS-QNANSYYWLGKCYETKK 180
           KSL+++ERGDALFKRAELK++  RR  VDSALADL E+V LS  NA ++  LG+CYE KK
Sbjct: 123 KSLTEKERGDALFKRAELKIAMPRRGKVDSALADLGEAVALSPDNARAFCLLGECYEVKK 182

Query: 181 LREEAKKAYEEALNIEPRLSNAREALERLSS 211
           +  EA+KAYE+AL IEP L  A++ L+RLSS
Sbjct: 183 MEAEARKAYEDALRIEPELGVAQQGLDRLSS 213

[Close]

BLAST of CsaV3_2G030200 vs. TrEMBL
Match: tr|A0A2P5BLU8|A0A2P5BLU8_PARAD (N-terminal acetyltransferase A, auxiliary subunit OS=Parasponia andersonii OX=3476 GN=PanWU01x14_228030 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 3.2e-62
Identity = 143/211 (67.77%), Postives = 173/211 (81.99%), Query Frame = 0


Query: 1   MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSNVESKRHFVRGAQLLARARSA 60
           MVTDILLQ  LILV +VMFLA+HNIPQ+ +AK R R R+ V+SKRHFV GAQLLARARSA
Sbjct: 3   MVTDILLQAVLILVSLVMFLALHNIPQKLYAKFRYRNRAQVQSKRHFVLGAQLLARARSA 62

Query: 61  PSRSSATSLAEEVVAEANKAIALDPKDAAAHILKALALDTQGFKTSALESLDTALSPLVA 120
            SRS+AT LA+E +AEA ++I LDPKDAAAHILKAL LD QGFK+SA++S+D ALSPL  
Sbjct: 63  NSRSAATPLAKEALAEAERSIELDPKDAAAHILKALVLDFQGFKSSAIDSIDAALSPLAV 122

Query: 121 KSLSDEERGDALFKRAELKMSTNRRALVDSALADLTESVTLS-QNANSYYWLGKCYETKK 180
           KSL+++ERGDALFKRAELK++  RR  VDSALADL E+V LS  NA ++  LG+CYE KK
Sbjct: 123 KSLTEKERGDALFKRAELKIAMPRRGKVDSALADLGEAVALSPDNARAFCLLGECYEVKK 182

Query: 181 LREEAKKAYEEALNIEPRLSNAREALERLSS 211
           +  EA+KAYE+AL IEP L  A++ L+RLSS
Sbjct: 183 MEAEARKAYEDALRIEPELGVAQQGLDRLSS 213

[Close]

BLAST of CsaV3_2G030200 vs. TrEMBL
Match: tr|A0A059BK89|A0A059BK89_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F00428 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 3.3e-59
Identity = 133/204 (65.20%), Postives = 167/204 (81.86%), Query Frame = 0


Query: 4   DILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSNVESKRHFVRGAQLLARARSAPSR 63
           DILLQ  ++LV V MFLAMH+IPQR+ +KLR R R  + +K+HFVRGAQLL +ARSAPSR
Sbjct: 4   DILLQAGIMLVTVFMFLAMHDIPQRFLSKLRFRGRKGLRAKQHFVRGAQLLGQARSAPSR 63

Query: 64  SSATSLAEEVVAEANKAIALDPKDAAAHILKALALDTQGFKTSALESLDTALSPLVAKSL 123
           S+A+SLA++  AEA++AI LDP+DAA+HILKALALD QGF+TSAL+SLD ALSPL ++SL
Sbjct: 64  SAASSLAKDAAAEADRAILLDPRDAASHILKALALDLQGFRTSALDSLDVALSPLASRSL 123

Query: 124 SDEERGDALFKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYETKKLREE 183
           SD ERGDALF+RAELK + +RR  VDSA+ DLT +V LS  A +   LG+C+E KK +EE
Sbjct: 124 SDRERGDALFRRAELKFALSRRGRVDSAIDDLTVAVKLSCGAKALLLLGQCHEAKKSKEE 183

Query: 184 AKKAYEEALNIEPRLSNAREALER 208
           A KAY+EAL +EP L+ AREAL+R
Sbjct: 184 AVKAYQEALEMEPTLAAAREALDR 207

The following BLAST results are available for this feature:

BLAST of CsaV3_2G030200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152601.1	1.1e-101	100.00	PREDICTED: uncharacterized protein LOC101214199 [Cucumis sativus] >KGN62747.1 hy...	[more]
XP_008444918.1	3.7e-99	99.05	PREDICTED: uncharacterized protein LOC103488119 [Cucumis melo]	[more]
XP_023537835.1	2.2e-91	92.42	uncharacterized protein LOC111798743 [Cucurbita pepo subsp. pepo]	[more]
XP_022951869.1	6.4e-91	91.94	uncharacterized protein LOC111454602 [Cucurbita moschata]	[more]
XP_023002879.1	8.4e-91	91.47	uncharacterized protein LOC111496615 [Cucurbita maxima]	[more]

BLAST of CsaV3_2G030200 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G65520.1	1.0e-34	44.28	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of CsaV3_2G030200 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G030200 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LPL8\|A0A0A0LPL8_CUCSA	7.0e-102	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G370460 PE=4 SV=1	[more]
tr\|A0A1S3BC86\|A0A1S3BC86_CUCME	2.5e-99	99.05	uncharacterized protein LOC103488119 OS=Cucumis melo OX=3656 GN=LOC103488119 PE=...	[more]
tr\|A0A2P5EWC9\|A0A2P5EWC9_9ROSA	4.9e-63	68.25	N-terminal acetyltransferase A, auxiliary subunit OS=Trema orientalis OX=63057 G...	[more]
tr\|A0A2P5BLU8\|A0A2P5BLU8_PARAD	3.2e-62	67.77	N-terminal acetyltransferase A, auxiliary subunit OS=Parasponia andersonii OX=34...	[more]
tr\|A0A059BK89\|A0A059BK89_EUCGR	3.3e-59	65.20	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F00428 PE=4 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR013026	TPR-contain_dom
IPR019734	TPR_repeat
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G030200.1	CsaV3_2G030200.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 30..118 e-value: 6.6E-5 score: 25.0
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 127..208 e-value: 8.1E-11 score: 43.8
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	SSF48452	TPR-like	coord: 71..201
IPR019734	Tetratricopeptide repeat	PFAM	PF13181	TPR_8	coord: 165..196 e-value: 7.6E-7 score: 28.8
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 165..198 score: 10.561
None	No IPR available	PANTHER	PTHR26312:SF71	SUBFAMILY NOT NAMED	coord: 3..212
None	No IPR available	PANTHER	PTHR26312	FAMILY NOT NAMED	coord: 3..212
IPR013026	Tetratricopeptide repeat-containing domain	PROSITE	PS50293	TPR_REGION	coord: 165..198 score: 10.675

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_2G030200	CSPI02G21580	Wild cucumber (PI 183967)	cpicucB081
CsaV3_2G030200	Cucsa.160560	Cucumber (Gy14) v1	cgycucB247
CsaV3_2G030200	CmaCh12G002040	Cucurbita maxima (Rimu)	cmacucB0204
CsaV3_2G030200	CmoCh12G001580	Cucurbita moschata (Rifu)	cmocucB0188
CsaV3_2G030200	Cp4.1LG07g01710	Cucurbita pepo (Zucchini)	cpecucB1016
CsaV3_2G030200	CsGy2G021310	Cucumber (Gy14) v2	cgybcucB065
CsaV3_2G030200	Carg22508	Silver-seed gourd	carcucB0860
CsaV3_2G030200	Cla022150	Watermelon (97103) v1	cucwmB121
CsaV3_2G030200	MELO3C011082	Melon (DHL92) v3.5.1	cucmeB124
CsaV3_2G030200	ClCG08G011630	Watermelon (Charleston Gray)	cucwcgB173
CsaV3_2G030200	Lsi08G010190	Bottle gourd (USVL1VR-Ls)	cuclsiB152
CsaV3_2G030200	MELO3C011082.2	Melon (DHL92) v3.6.1	cucmedB118
CsaV3_2G030200	Cla97C08G154650	Watermelon (97103) v2	cucwmbB160
CsaV3_2G030200	Bhi04G001109	Wax gourd	cucwgoB175

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G030200	Silver-seed gourd	carcucB0065
CsaV3_2G030200	Silver-seed gourd	carcucB0434
CsaV3_2G030200	Cucumber (Gy14) v2	cgybcucB111
CsaV3_2G030200	Cucumber (Gy14) v2	cgybcucB260
CsaV3_2G030200	Cucumber (Gy14) v2	cgybcucB263
CsaV3_2G030200	Cucumber (Gy14) v1	cgycucB118
CsaV3_2G030200	Cucumber (Gy14) v1	cgycucB483
CsaV3_2G030200	Cucurbita maxima (Rimu)	cmacucB0020
CsaV3_2G030200	Cucurbita maxima (Rimu)	cmacucB0779
CsaV3_2G030200	Cucurbita maxima (Rimu)	cmacucB0927
CsaV3_2G030200	Cucurbita maxima (Rimu)	cmacucB1008
CsaV3_2G030200	Cucurbita moschata (Rifu)	cmocucB0762
CsaV3_2G030200	Cucurbita moschata (Rifu)	cmocucB0919
CsaV3_2G030200	Cucurbita moschata (Rifu)	cmocucB0993
CsaV3_2G030200	Cucurbita pepo (Zucchini)	cpecucB0065
CsaV3_2G030200	Cucurbita pepo (Zucchini)	cpecucB0107
CsaV3_2G030200	Cucurbita pepo (Zucchini)	cpecucB0590
CsaV3_2G030200	Bottle gourd (USVL1VR-Ls)	cuclsiB132
CsaV3_2G030200	Wild cucumber (PI 183967)	cpicucB136
CsaV3_2G030200	Wild cucumber (PI 183967)	cpicucB326
CsaV3_2G030200	Wild cucumber (PI 183967)	cpicucB328
CsaV3_2G030200	Bottle gourd (USVL1VR-Ls)	cuclsiB114
CsaV3_2G030200	Melon (DHL92) v3.5.1	cucmeB130
CsaV3_2G030200	Melon (DHL92) v3.5.1	cucmeB155
CsaV3_2G030200	Melon (DHL92) v3.5.1	cucmeB158
CsaV3_2G030200	Melon (DHL92) v3.6.1	cucmedB125
CsaV3_2G030200	Melon (DHL92) v3.6.1	cucmedB147
CsaV3_2G030200	Melon (DHL92) v3.6.1	cucmedB149
CsaV3_2G030200	Watermelon (Charleston Gray)	cucwcgB114
CsaV3_2G030200	Watermelon (Charleston Gray)	cucwcgB127
CsaV3_2G030200	Watermelon (Charleston Gray)	cucwcgB129
CsaV3_2G030200	Watermelon (97103) v1	cucwmB147
CsaV3_2G030200	Watermelon (97103) v1	cucwmB171
CsaV3_2G030200	Watermelon (97103) v2	cucwmbB103
CsaV3_2G030200	Watermelon (97103) v2	cucwmbB111
CsaV3_2G030200	Watermelon (97103) v2	cucwmbB119
CsaV3_2G030200	Wax gourd	cucwgoB206
CsaV3_2G030200	Wax gourd	cucwgoB212
CsaV3_2G030200	Cucumber (Chinese Long) v3	cuccucB069
CsaV3_2G030200	Cucumber (Chinese Long) v3	cuccucB078
CsaV3_2G030200	Cucumber (Chinese Long) v3	cuccucB089
CsaV3_2G030200	Cucumber (Chinese Long) v3	cuccucB091