CsaV3_2G007920 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G007920
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionRING-H2 finger protein ATL56
Locationchr2 : 4220900 .. 4221740 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAAGCATTGTAATTCCTAAGTATCATAAGACCAAAAGAAATGGCCCTACCTCCCCACAAGCCTTCGGAAAAAATCAAAACCCACACGCCCACGGTTTCCATTTCTATACTCTTTTTCCTCGAACTCTACATCATTCAACCATATCCCCAATCCCCCAATTTCCTTCAAAATTCCACTCATCCCTCGCCGCCCAACAACCCCCAAATGCCCTTTCAACCTTCTGCCGCCGTGAGCGGCCACCCACTTCCCCACCCTCCGCCACCGCCTAAGCCAGAGACTCAACTCCTTTCTCTGCTTCTCAAAATCGCCATCATGATTCTCTTAACCACTCTCTTCTTCGTCTTCCTCGGCCTCGCCACTGCCCTTCTCCTTATCCACCTCTGCGTCGCTAGTGCCCTCCATCGCCGTCGCCGATTCCACAGTCGCCATTCCCAATACTCCGATTCCTCATCTGGGTTCTCCCATCGTGACCTCAAAAAGCTTCTCCAGTTCCGATTCTCCAATTGGGTCAATCCCCATTCTCAAATTGACTGCTCTATTTGTCTTGATGGCTTTAGAAAAGGTCAGTGGTGTAGGAGACTTGGTGGGTGTGGGCATGTTTATCATCGCAAGTGTATTGATTCGTGGTTAGTTAGGGTTTCTGCTTGTCCTCTATGCCGACGATGTGTTCGATTGGATATGGAAGAACATGAAATTGATTGTGTAAGTTCTCGGAACTTTGAGCTTTTTTATGCTCTGTAACTGCCTTTAACTTTAGTTTAGTTTCTTCTTTCTTTTTTGATTACGTTCTCTTTTAGATGTATATAAAGTCGAATCAATGTTATTCGATGAAGGTTACT

mRNA sequence

ATGGCCCTACCTCCCCACAAGCCTTCGGAAAAAATCAAAACCCACACGCCCACGGTTTCCATTTCTATACTCTTTTTCCTCGAACTCTACATCATTCAACCATATCCCCAATCCCCCAATTTCCTTCAAAATTCCACTCATCCCTCGCCGCCCAACAACCCCCAAATGCCCTTTCAACCTTCTGCCGCCGTGAGCGGCCACCCACTTCCCCACCCTCCGCCACCGCCTAAGCCAGAGACTCAACTCCTTTCTCTGCTTCTCAAAATCGCCATCATGATTCTCTTAACCACTCTCTTCTTCGTCTTCCTCGGCCTCGCCACTGCCCTTCTCCTTATCCACCTCTGCGTCGCTAGTGCCCTCCATCGCCGTCGCCGATTCCACAGTCGCCATTCCCAATACTCCGATTCCTCATCTGGGTTCTCCCATCGTGACCTCAAAAAGCTTCTCCAGTTCCGATTCTCCAATTGGGTCAATCCCCATTCTCAAATTGACTGCTCTATTTGTCTTGATGGCTTTAGAAAAGGGTTTCTGCTTGTCCTCTATGCCGACGATGTGTTCGATTGGATATGGAAGAACATGAAATTGATTGTGTAA

Coding sequence (CDS)

ATGGCCCTACCTCCCCACAAGCCTTCGGAAAAAATCAAAACCCACACGCCCACGGTTTCCATTTCTATACTCTTTTTCCTCGAACTCTACATCATTCAACCATATCCCCAATCCCCCAATTTCCTTCAAAATTCCACTCATCCCTCGCCGCCCAACAACCCCCAAATGCCCTTTCAACCTTCTGCCGCCGTGAGCGGCCACCCACTTCCCCACCCTCCGCCACCGCCTAAGCCAGAGACTCAACTCCTTTCTCTGCTTCTCAAAATCGCCATCATGATTCTCTTAACCACTCTCTTCTTCGTCTTCCTCGGCCTCGCCACTGCCCTTCTCCTTATCCACCTCTGCGTCGCTAGTGCCCTCCATCGCCGTCGCCGATTCCACAGTCGCCATTCCCAATACTCCGATTCCTCATCTGGGTTCTCCCATCGTGACCTCAAAAAGCTTCTCCAGTTCCGATTCTCCAATTGGGTCAATCCCCATTCTCAAATTGACTGCTCTATTTGTCTTGATGGCTTTAGAAAAGGGTTTCTGCTTGTCCTCTATGCCGACGATGTGTTCGATTGGATATGGAAGAACATGAAATTGATTGTGTAA

Protein sequence

MALPPHKPSEKIKTHTPTVSISILFFLELYIIQPYPQSPNFLQNSTHPSPPNNPQMPFQPSAAVSGHPLPHPPPPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHLCVASALHRRRRFHSRHSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKGFLLVLYADDVFDWIWKNMKLIV
Homology
[Close]
BLAST of CsaV3_2G007920 vs. NCBI nr
Match: KGN61089.1 (hypothetical protein Csa_2G047820 [Cucumis sativus])

HSP 1 Score: 248.1 bits (632), Expect = 2.6e-62
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0 

Query: 1   MALPPHKPSEKIKTHTPTVSISILFFLELYIIQPYPQSPNFLQNSTHPSPPNNPQMPFQP 60
           MALPPHKPSEKIKTHTPTVSISILFFLELYIIQPYPQSPNFLQNSTHPSPPNNPQMPFQP
Sbjct: 1   MALPPHKPSEKIKTHTPTVSISILFFLELYIIQPYPQSPNFLQNSTHPSPPNNPQMPFQP 60

Query: 61  SAAVSGHPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASAL 120
           SAAVSGHPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASAL
Sbjct: 61  SAAVSGHPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASAL 120

Query: 121 HRRRRFHSRHSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 176
           HRRRRFHSRHSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG
Sbjct: 121 HRRRRFHSRHSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 175

[Close]
BLAST of CsaV3_2G007920 vs. NCBI nr
Match: XP_004149098.1 (PREDICTED: RING-H2 finger protein ATL56 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 6.4e-29
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0 

Query: 56  MPFQPSAAVSGHPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 115
           MPFQPSAAVSGHPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MPFQPSAAVSGHPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 116 XASALHRRRRFHSRHSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 175
           XASALHRRRRFHSRHSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG
Sbjct: 61  XASALHRRRRFHSRHSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 120

[Close]
BLAST of CsaV3_2G007920 vs. NCBI nr
Match: XP_008452306.1 (PREDICTED: RING-H2 finger protein ATL56 [Cucumis melo])

HSP 1 Score: 125.2 bits (313), Expect = 2.5e-25
Identity = 116/120 (96.67%), Postives = 116/120 (96.67%), Query Frame = 0 

Query: 56  MPFQPSAAVSGHPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 115
           MPFQ SAAVSG PLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MPFQHSAAVSGDPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 116 XASALHRRRRFHSRHSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 175
           X SALHRRRRFHSR SQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG
Sbjct: 61  XXSALHRRRRFHSRRSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 120

[Close]
BLAST of CsaV3_2G007920 vs. NCBI nr
Match: XP_022929717.1 (RING-H2 finger protein ATL56-like [Cucurbita moschata])

HSP 1 Score: 95.1 bits (235), Expect = 2.8e-16
Identity = 48/59 (81.36%), Postives = 50/59 (84.75%), Query Frame = 0 

Query: 117 ASALHRRRRFHSRHSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 176
           ASALHRRR      +QY DSSSGFS RDLKKLLQF+FSN VNPHSQIDCSICLDGFRKG
Sbjct: 62  ASALHRRR------AQYPDSSSGFSRRDLKKLLQFQFSNGVNPHSQIDCSICLDGFRKG 114

[Close]
BLAST of CsaV3_2G007920 vs. NCBI nr
Match: XP_022997472.1 (RING-H2 finger protein ATL56-like [Cucurbita maxima])

HSP 1 Score: 95.1 bits (235), Expect = 2.8e-16
Identity = 48/59 (81.36%), Postives = 50/59 (84.75%), Query Frame = 0 

Query: 117 ASALHRRRRFHSRHSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 176
           ASALHRRR      +QY DSSSGFS RDLKKLLQF+FSN VNPHSQIDCSICLDGFRKG
Sbjct: 62  ASALHRRR------AQYPDSSSGFSRRDLKKLLQFQFSNGVNPHSQIDCSICLDGFRKG 114

[Close]
BLAST of CsaV3_2G007920 vs. TAIR10
Match: AT4G30370.1 (RING/U-box superfamily protein)

HSP 1 Score: 43.5 bits (101), Expect = 1.8e-04
Identity = 25/55 (45.45%), Postives = 35/55 (63.64%), Query Frame = 0 

Query: 121 HRRRRFHSRHSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 176
           HR RR H RH +YSD   G S R +K+L QF++    + +   DC +C+DGFR+G
Sbjct: 76  HRLRR-HRRH-EYSD---GLSPRCVKRLPQFKYCEPSSEYGGDDCVVCIDGFRQG 125

[Close]
BLAST of CsaV3_2G007920 vs. TrEMBL
Match: tr|A0A0A0LJ61|A0A0A0LJ61_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G047820 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 1.7e-62
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0 

Query: 1   MALPPHKPSEKIKTHTPTVSISILFFLELYIIQPYPQSPNFLQNSTHPSPPNNPQMPFQP 60
           MALPPHKPSEKIKTHTPTVSISILFFLELYIIQPYPQSPNFLQNSTHPSPPNNPQMPFQP
Sbjct: 1   MALPPHKPSEKIKTHTPTVSISILFFLELYIIQPYPQSPNFLQNSTHPSPPNNPQMPFQP 60

Query: 61  SAAVSGHPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASAL 120
           SAAVSGHPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASAL
Sbjct: 61  SAAVSGHPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASAL 120

Query: 121 HRRRRFHSRHSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 176
           HRRRRFHSRHSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG
Sbjct: 121 HRRRRFHSRHSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 175

[Close]
BLAST of CsaV3_2G007920 vs. TrEMBL
Match: tr|A0A1S3BTK8|A0A1S3BTK8_CUCME (RING-H2 finger protein ATL56 OS=Cucumis melo OX=3656 GN=LOC103493368 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.7e-25
Identity = 116/120 (96.67%), Postives = 116/120 (96.67%), Query Frame = 0 

Query: 56  MPFQPSAAVSGHPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 115
           MPFQ SAAVSG PLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MPFQHSAAVSGDPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 116 XASALHRRRRFHSRHSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 175
           X SALHRRRRFHSR SQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG
Sbjct: 61  XXSALHRRRRFHSRRSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 120

[Close]
BLAST of CsaV3_2G007920 vs. TrEMBL
Match: tr|A0A2C9VMD0|A0A2C9VMD0_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G025800 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.8e-04
Identity = 26/50 (52.00%), Postives = 33/50 (66.00%), Query Frame = 0 

Query: 126 FHSRHSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 176
           FH RHS  SDS+ G S + LKKL QF+FS    P  + DC +CL+G R+G
Sbjct: 66  FH-RHSGPSDSADGLSPKGLKKLPQFKFSRRTKPEDEADCVVCLEGIRQG 114

[Close]
BLAST of CsaV3_2G007920 vs. TrEMBL
Match: tr|A0A2P2Q4J7|A0A2P2Q4J7_RHIMU (Zinc finger family protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.7e-04
Identity = 24/49 (48.98%), Postives = 31/49 (63.27%), Query Frame = 0 

Query: 127 HSRHSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 176
           H+RHS    S   FS +DLKKL QFR+S  + P    DC +CL+G R+G
Sbjct: 67  HNRHSATFSSPKEFSFKDLKKLPQFRYSKRLRPDDDADCVVCLEGIRQG 115

[Close]
BLAST of CsaV3_2G007920 vs. TrEMBL
Match: tr|H8ZJ02|H8ZJ02_MANES (RING-H2 zinc finger protein OS=Manihot esculenta OX=3983 GN=RZF PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.7e-04
Identity = 26/50 (52.00%), Postives = 33/50 (66.00%), Query Frame = 0 

Query: 126 FHSRHSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 176
           FH RHS  SDS+ G S + LKKL QF+FS    P  + DC +CL+G R+G
Sbjct: 66  FH-RHSGPSDSAVGLSPKGLKKLPQFKFSRRTKPEDEADCVVCLEGIRQG 114

The following BLAST results are available for this feature:
BLAST of CsaV3_2G007920 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61089.12.6e-62100.00hypothetical protein Csa_2G047820 [Cucumis sativus][more]
XP_004149098.16.4e-29100.00PREDICTED: RING-H2 finger protein ATL56 [Cucumis sativus][more]
XP_008452306.12.5e-2596.67PREDICTED: RING-H2 finger protein ATL56 [Cucumis melo][more]
XP_022929717.12.8e-1681.36RING-H2 finger protein ATL56-like [Cucurbita moschata][more]
XP_022997472.12.8e-1681.36RING-H2 finger protein ATL56-like [Cucurbita maxima][more]
BLAST of CsaV3_2G007920 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G30370.11.8e-0445.45RING/U-box superfamily protein[more]
BLAST of CsaV3_2G007920 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G007920 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LJ61|A0A0A0LJ61_CUCSA1.7e-62100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G047820 PE=4 SV=1[more]
tr|A0A1S3BTK8|A0A1S3BTK8_CUCME1.7e-2596.67RING-H2 finger protein ATL56 OS=Cucumis melo OX=3656 GN=LOC103493368 PE=4 SV=1[more]
tr|A0A2C9VMD0|A0A2C9VMD0_MANES2.8e-0452.00Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G025800 PE=4 SV=... [more]
tr|A0A2P2Q4J7|A0A2P2Q4J7_RHIMU4.7e-0448.98Zinc finger family protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
tr|H8ZJ02|H8ZJ02_MANES4.7e-0452.00RING-H2 zinc finger protein OS=Manihot esculenta OX=3983 GN=RZF PE=2 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G007920.1CsaV3_2G007920.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..75

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G007920CSPI02G05570Wild cucumber (PI 183967)cpicucB080
CsaV3_2G007920Cucsa.089780Cucumber (Gy14) v1cgycucB097
CsaV3_2G007920CmaCh05G006650Cucurbita maxima (Rimu)cmacucB0928
CsaV3_2G007920CmaCh12G009980Cucurbita maxima (Rimu)cmacucB0195
CsaV3_2G007920CmoCh12G010080Cucurbita moschata (Rifu)cmocucB0179
CsaV3_2G007920CmoCh05G006980Cucurbita moschata (Rifu)cmocucB0920
CsaV3_2G007920Cp4.1LG11g05930Cucurbita pepo (Zucchini)cpecucB0108
CsaV3_2G007920Cp4.1LG07g08400Cucurbita pepo (Zucchini)cpecucB1009
CsaV3_2G007920CsGy2G005710Cucumber (Gy14) v2cgybcucB064
CsaV3_2G007920Carg23480Silver-seed gourdcarcucB0520
CsaV3_2G007920Cla022861Watermelon (97103) v1cucwmB175
CsaV3_2G007920MELO3C004093Melon (DHL92) v3.5.1cucmeB141
CsaV3_2G007920ClCG11G012570Watermelon (Charleston Gray)cucwcgB119
CsaV3_2G007920Lsi11G007210Bottle gourd (USVL1VR-Ls)cuclsiB108
CsaV3_2G007920MELO3C004093.2Melon (DHL92) v3.6.1cucmedB134
CsaV3_2G007920Cla97C11G218430Watermelon (97103) v2cucwmbB114
CsaV3_2G007920Bhi06G001176Wax gourdcucwgoB145
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G007920Cucumber (Chinese Long) v3cuccucB008
CsaV3_2G007920Silver-seed gourdcarcucB0066
CsaV3_2G007920Cucumber (Gy14) v2cgybcucB017
CsaV3_2G007920Cucurbita maxima (Rimu)cmacucB0083
CsaV3_2G007920Cucurbita maxima (Rimu)cmacucB0136
CsaV3_2G007920Cucurbita moschata (Rifu)cmocucB0072
CsaV3_2G007920Cucurbita pepo (Zucchini)cpecucB0452
CsaV3_2G007920Cucurbita pepo (Zucchini)cpecucB0827
CsaV3_2G007920Wild cucumber (PI 183967)cpicucB020
CsaV3_2G007920Bottle gourd (USVL1VR-Ls)cuclsiB146
CsaV3_2G007920Watermelon (Charleston Gray)cucwcgB158
CsaV3_2G007920Watermelon (97103) v1cucwmB182
CsaV3_2G007920Watermelon (97103) v2cucwmbB145
CsaV3_2G007920Wax gourdcucwgoB221