Carg23480 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23480
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RING-H2 finger protein ATL56
Location	Cucurbita_argyrosperma_scaffold_196 : 379192 .. 379719 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCTTCAAGATTCCACCGCCGCCCTCGCCGGCGACCCTCCACCGCCTAAGCCAGAGGCCAAAGTCCTGTCTCTGCTCCTCAAGGTCTCCATTATGATCGTCTTAACCACCCTCTTCTTCGTCTTCCTCGGCCTCGCCACTGCCCTCCTCCTCATCTACCCCTGCGTCGCTAGCGTCCTTCACCGCCGACGACGACGCCGCCATCGCCGCCGTTCCCAATTCACCGATTCCTCATCTGGGTTCTCTAATCGTGACCTCAAAAAGCTCCTCCAGTTTCGATTCTCCAATTGGGTCAACCCCCACTCTCAAATTGACTGCCCTATTTGCCTTGGTGGGTTTAGAAAAGGTCAGTGGTGTAGAAAACTTGGTGGGTGCGGCCATATTTATCACCGGAAGTGCATCGATTCGTGGTTGGTTAGGGTTTCTGCTTGCCCCCTTTGCCGGAGCTCCGTCCGATTGGATATGGAAGAAAATCAAATGGATTGTGCAAATTATCAGAGCTATGAGATTTTGTATGCTCCGTAA

mRNA sequence

ATGCCTCTTCAAGATTCCACCGCCGCCCTCGCCGGCGACCCTCCACCGCCTAAGCCAGAGGCCAAAGTCCTGTCTCTGCTCCTCAAGGTCTCCATTATGATCGTCTTAACCACCCTCTTCTTCGTCTTCCTCGGCCTCGCCACTGCCCTCCTCCTCATCTACCCCTGCGTCGCTAGCGTCCTTCACCGCCGACGACGACGCCGCCATCGCCGCCGTTCCCAATTCACCGATTCCTCATCTGGGTTCTCTAATCGTGACCTCAAAAAGCTCCTCCAGTTTCGATTCTCCAATTGGGTCAACCCCCACTCTCAAATTGACTGCCCTATTTGCCTTGGTGGGTTTAGAAAAGGTCAGTGGTGTAGAAAACTTGGTGGGTGCGGCCATATTTATCACCGGAAGTGCATCGATTCGTGGTTGGTTAGGGTTTCTGCTTGCCCCCTTTGCCGGAGCTCCGTCCGATTGGATATGGAAGAAAATCAAATGGATTGTGCAAATTATCAGAGCTATGAGATTTTGTATGCTCCGTAA

Coding sequence (CDS)

ATGCCTCTTCAAGATTCCACCGCCGCCCTCGCCGGCGACCCTCCACCGCCTAAGCCAGAGGCCAAAGTCCTGTCTCTGCTCCTCAAGGTCTCCATTATGATCGTCTTAACCACCCTCTTCTTCGTCTTCCTCGGCCTCGCCACTGCCCTCCTCCTCATCTACCCCTGCGTCGCTAGCGTCCTTCACCGCCGACGACGACGCCGCCATCGCCGCCGTTCCCAATTCACCGATTCCTCATCTGGGTTCTCTAATCGTGACCTCAAAAAGCTCCTCCAGTTTCGATTCTCCAATTGGGTCAACCCCCACTCTCAAATTGACTGCCCTATTTGCCTTGGTGGGTTTAGAAAAGGTCAGTGGTGTAGAAAACTTGGTGGGTGCGGCCATATTTATCACCGGAAGTGCATCGATTCGTGGTTGGTTAGGGTTTCTGCTTGCCCCCTTTGCCGGAGCTCCGTCCGATTGGATATGGAAGAAAATCAAATGGATTGTGCAAATTATCAGAGCTATGAGATTTTGTATGCTCCGTAA

Protein sequence

MPLQDSTAALAGDPPPPKPEAKVLSLLLKVSIMIVLTTLFFVFLGLATALLLIYPCVASVLHRRRRRRHRRRSQFTDSSSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQWCRKLGGCGHIYHRKCIDSWLVRVSACPLCRSSVRLDMEENQMDCANYQSYEILYAP

Homology

[Close]

BLAST of Carg23480 vs. NCBI nr
Match: XP_022938060.1 (RING-H2 finger protein ATL56-like [Cucurbita moschata])

HSP 1 Score: 225.3 bits (573), Expect = 1.6e-55
Identity = 174/175 (99.43%), Postives = 175/175 (100.00%), Query Frame = 0


Query: 1   MPLQDSTAALAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MPLQDSTAALAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MPLQDSTAALAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXTDSSSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQWC 120
           XXXXXXXXXXXXXXXTDSSSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQWC
Sbjct: 61  XXXXXXXXXXXXXXXTDSSSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQWC 120

Query: 121 RKLGGCGHIYHRKCIDSWLVRVSACPLCRSSVRLDMEENQMDCANYQSYEILYAP 176
           RKLGGCGHIYHRKCIDSWLVRVSACPLCRSSVRLDMEENQMDCANY+SYEILYAP
Sbjct: 121 RKLGGCGHIYHRKCIDSWLVRVSACPLCRSSVRLDMEENQMDCANYRSYEILYAP 175

[Close]

BLAST of Carg23480 vs. NCBI nr
Match: XP_023538017.1 (RING-H2 finger protein ATL56-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 220.3 bits (560), Expect = 5.1e-54
Identity = 98/100 (98.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 76  TDSSSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQWCRKLGGCGHIYHRKCI 135
           TDSSSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQWCRKLGGCGHIYHRKCI
Sbjct: 76  TDSSSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQWCRKLGGCGHIYHRKCI 135

Query: 136 DSWLVRVSACPLCRSSVRLDMEENQMDCANYQSYEILYAP 176
           DSWLVRVSACPLCRSSVRLDMEENQMDCAN +SYEILYAP
Sbjct: 136 DSWLVRVSACPLCRSSVRLDMEENQMDCANSRSYEILYAP 175

[Close]

BLAST of Carg23480 vs. NCBI nr
Match: XP_022965979.1 (RING-H2 finger protein ATL56-like [Cucurbita maxima])

HSP 1 Score: 218.0 bits (554), Expect = 2.5e-53
Identity = 96/100 (96.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 76  TDSSSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQWCRKLGGCGHIYHRKCI 135
           TDSSSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQWCRKLGGCGH+YHRKCI
Sbjct: 76  TDSSSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQWCRKLGGCGHVYHRKCI 135

Query: 136 DSWLVRVSACPLCRSSVRLDMEENQMDCANYQSYEILYAP 176
           DSWLVRVSACPLCRS VRLDMEENQMDCAN +SYEILYAP
Sbjct: 136 DSWLVRVSACPLCRSPVRLDMEENQMDCANSRSYEILYAP 175

[Close]

BLAST of Carg23480 vs. NCBI nr
Match: XP_004149098.1 (PREDICTED: RING-H2 finger protein ATL56 [Cucumis sativus])

HSP 1 Score: 189.9 bits (481), Expect = 7.4e-45
Identity = 80/99 (80.81%), Postives = 92/99 (92.93%), Query Frame = 0


Query: 76  TDSSSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQWCRKLGGCGHIYHRKCI 135
           +DSSSGFS+RDLKKLLQFRFSNWVNPHSQIDC ICL GFRKGQWCR+LGGCGH+YHRKCI
Sbjct: 79  SDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKGQWCRRLGGCGHVYHRKCI 138

Query: 136 DSWLVRVSACPLCRSSVRLDMEENQMDCANYQSYEILYA 175
           DSWLVRVSACPLCR  VRLDMEE+++DC + +++E+ YA
Sbjct: 139 DSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYA 177

[Close]

BLAST of Carg23480 vs. NCBI nr
Match: XP_008452306.1 (PREDICTED: RING-H2 finger protein ATL56 [Cucumis melo])

HSP 1 Score: 189.9 bits (481), Expect = 7.4e-45
Identity = 80/99 (80.81%), Postives = 92/99 (92.93%), Query Frame = 0


Query: 76  TDSSSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQWCRKLGGCGHIYHRKCI 135
           +DSSSGFS+RDLKKLLQFRFSNWVNPHSQIDC ICL GFRKGQWCR+LGGCGH+YHRKCI
Sbjct: 79  SDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKGQWCRRLGGCGHVYHRKCI 138

Query: 136 DSWLVRVSACPLCRSSVRLDMEENQMDCANYQSYEILYA 175
           DSWLVRVSACPLCR  VRLDMEE+++DC + +++E+ YA
Sbjct: 139 DSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYA 177

[Close]

BLAST of Carg23480 vs. TAIR10
Match: AT2G18670.1 (RING/U-box superfamily protein)

HSP 1 Score: 104.4 bits (259), Expect = 7.4e-23
Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = 0


Query: 81  GFSNRDLKKLLQFRFSN-WVNPHSQIDCPICLGGFRKGQWCRKLGGCGHIYHRKCIDSWL 140
           G S+R +KKL QF+FS        + DC +C  GFR+GQWCR L GCGH++HRKC+D+WL
Sbjct: 83  GLSSRFVKKLPQFKFSEPSTYTRYESDCVVCFDGFRQGQWCRNLPGCGHVFHRKCVDTWL 142

Query: 141 VRVSACPLCRSSVRLDMEENQ 161
           ++ S CP+CR+ VRL  E+ Q
Sbjct: 143 LKASTCPICRARVRLWEEDPQ 163

[Close]

BLAST of Carg23480 vs. TAIR10
Match: AT4G30370.1 (RING/U-box superfamily protein)

HSP 1 Score: 99.8 bits (247), Expect = 1.8e-21
Identity = 38/74 (51.35%), Postives = 53/74 (71.62%), Query Frame = 0


Query: 79  SSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQWCRKLGGCGHIYHRKCIDSW 138
           S G S R +K+L QF++    + +   DC +C+ GFR+GQWCRKL  CGH++HRKC+D W
Sbjct: 87  SDGLSPRCVKRLPQFKYCEPSSEYGGDDCVVCIDGFRQGQWCRKLPRCGHVFHRKCVDLW 146

Query: 139 LVRVSACPLCRSSV 153
           L++VS CP+CR  V
Sbjct: 147 LIKVSTCPICRDRV 160

[Close]

BLAST of Carg23480 vs. TAIR10
Match: AT5G01880.1 (RING/U-box superfamily protein)

HSP 1 Score: 65.5 bits (158), Expect = 3.8e-11
Identity = 29/73 (39.73%), Postives = 40/73 (54.79%), Query Frame = 0


Query: 80  SGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQWCRKLGGCGHIYHRKCIDSWL 139
           +G   R+LKK     + +     +  +C ICLG F  G+  R L  C H +H  CID+WL
Sbjct: 78  AGLKKRELKKFPVAEYGSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWL 137

Query: 140 VRVSACPLCRSSV 153
           V  S+CP CR S+
Sbjct: 138 VSHSSCPNCRHSL 150

[Close]

BLAST of Carg23480 vs. TAIR10
Match: AT3G11110.1 (RING/U-box superfamily protein)

HSP 1 Score: 64.3 bits (155), Expect = 8.5e-11
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 109 ICLGGFRKGQWCRKLGGCGHIYHRKCIDSWLVRVSACPLCRSSVRLD 156
           ICLGGF +G+  + L  C H YH +C+D WL   S+CPLCR S+R+D
Sbjct: 109 ICLGGFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLCRVSIRVD 155

[Close]

BLAST of Carg23480 vs. TAIR10
Match: AT3G10910.1 (RING/U-box superfamily protein)

HSP 1 Score: 63.9 bits (154), Expect = 1.1e-10
Identity = 27/78 (34.62%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 78  SSSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQWCRKLGGCGHIYHRKCIDS 137
           +++G   + LK++    + + +      +C ICLG F  G+  R L  C H +H +CID+
Sbjct: 85  AATGLKKQALKQIPVGLYGSGIIDMKATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDT 144

Query: 138 WLVRVSACPLCRSSVRLD 156
           WL+  S+CP CR S+ L+
Sbjct: 145 WLLSRSSCPTCRQSLLLE 162

[Close]

BLAST of Carg23480 vs. Swiss-Prot
Match: sp|Q9ZV51|ATL56_ARATH (RING-H2 finger protein ATL56 OS=Arabidopsis thaliana OX=3702 GN=ATL56 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.3e-21
Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = 0


Query: 81  GFSNRDLKKLLQFRFSN-WVNPHSQIDCPICLGGFRKGQWCRKLGGCGHIYHRKCIDSWL 140
           G S+R +KKL QF+FS        + DC +C  GFR+GQWCR L GCGH++HRKC+D+WL
Sbjct: 83  GLSSRFVKKLPQFKFSEPSTYTRYESDCVVCFDGFRQGQWCRNLPGCGHVFHRKCVDTWL 142

Query: 141 VRVSACPLCRSSVRLDMEENQ 161
           ++ S CP+CR+ VRL  E+ Q
Sbjct: 143 LKASTCPICRARVRLWEEDPQ 163

[Close]

BLAST of Carg23480 vs. Swiss-Prot
Match: sp|Q9M0C3|ATL14_ARATH (RING-H2 finger protein ATL14 OS=Arabidopsis thaliana OX=3702 GN=ATL14 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.3e-20
Identity = 38/74 (51.35%), Postives = 53/74 (71.62%), Query Frame = 0


Query: 79  SSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQWCRKLGGCGHIYHRKCIDSW 138
           S G S R +K+L QF++    + +   DC +C+ GFR+GQWCRKL  CGH++HRKC+D W
Sbjct: 87  SDGLSPRCVKRLPQFKYCEPSSEYGGDDCVVCIDGFRQGQWCRKLPRCGHVFHRKCVDLW 146

Query: 139 LVRVSACPLCRSSV 153
           L++VS CP+CR  V
Sbjct: 147 LIKVSTCPICRDRV 160

[Close]

BLAST of Carg23480 vs. Swiss-Prot
Match: sp|Q9LZV8|ATL74_ARATH (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.9e-10
Identity = 29/73 (39.73%), Postives = 40/73 (54.79%), Query Frame = 0


Query: 80  SGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQWCRKLGGCGHIYHRKCIDSWL 139
           +G   R+LKK     + +     +  +C ICLG F  G+  R L  C H +H  CID+WL
Sbjct: 78  AGLKKRELKKFPVAEYGSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWL 137

Query: 140 VRVSACPLCRSSV 153
           V  S+CP CR S+
Sbjct: 138 VSHSSCPNCRHSL 150

[Close]

BLAST of Carg23480 vs. Swiss-Prot
Match: sp|Q9SRM0|ATL66_ARATH (RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.5e-09
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 109 ICLGGFRKGQWCRKLGGCGHIYHRKCIDSWLVRVSACPLCRSSVRLD 156
           ICLGGF +G+  + L  C H YH +C+D WL   S+CPLCR S+R+D
Sbjct: 109 ICLGGFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLCRVSIRVD 155

[Close]

BLAST of Carg23480 vs. Swiss-Prot
Match: sp|Q9SG96|ATL72_ARATH (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.0e-09
Identity = 27/78 (34.62%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 78  SSSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQWCRKLGGCGHIYHRKCIDS 137
           +++G   + LK++    + + +      +C ICLG F  G+  R L  C H +H +CID+
Sbjct: 85  AATGLKKQALKQIPVGLYGSGIIDMKATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDT 144

Query: 138 WLVRVSACPLCRSSVRLD 156
           WL+  S+CP CR S+ L+
Sbjct: 145 WLLSRSSCPTCRQSLLLE 162

[Close]

BLAST of Carg23480 vs. TrEMBL
Match: tr|A0A1S3BTK8|A0A1S3BTK8_CUCME (RING-H2 finger protein ATL56 OS=Cucumis melo OX=3656 GN=LOC103493368 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 4.9e-45
Identity = 80/99 (80.81%), Postives = 92/99 (92.93%), Query Frame = 0


Query: 76  TDSSSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQWCRKLGGCGHIYHRKCI 135
           +DSSSGFS+RDLKKLLQFRFSNWVNPHSQIDC ICL GFRKGQWCR+LGGCGH+YHRKCI
Sbjct: 79  SDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKGQWCRRLGGCGHVYHRKCI 138

Query: 136 DSWLVRVSACPLCRSSVRLDMEENQMDCANYQSYEILYA 175
           DSWLVRVSACPLCR  VRLDMEE+++DC + +++E+ YA
Sbjct: 139 DSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYA 177

[Close]

BLAST of Carg23480 vs. TrEMBL
Match: tr|A0A0A0LJ61|A0A0A0LJ61_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G047820 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 4.9e-45
Identity = 80/99 (80.81%), Postives = 92/99 (92.93%), Query Frame = 0


Query: 76  TDSSSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQWCRKLGGCGHIYHRKCI 135
           +DSSSGFS+RDLKKLLQFRFSNWVNPHSQIDC ICL GFRKGQWCR+LGGCGH+YHRKCI
Sbjct: 134 SDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKGQWCRRLGGCGHVYHRKCI 193

Query: 136 DSWLVRVSACPLCRSSVRLDMEENQMDCANYQSYEILYA 175
           DSWLVRVSACPLCR  VRLDMEE+++DC + +++E+ YA
Sbjct: 194 DSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYA 232

[Close]

BLAST of Carg23480 vs. TrEMBL
Match: tr|A0A067KDU1|A0A067KDU1_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_07823 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.1e-23
Identity = 46/82 (56.10%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 76  TDSSSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQWCRKLGGCGHIYHRKCI 135
           ++S++G S +DLKKL QF+ S    P ++ DC +CL G ++GQWCRKL GCGH++HRKC+
Sbjct: 69  SNSTNGLSFKDLKKLPQFKISKKSKPEAEADCVVCLDGIKQGQWCRKLIGCGHVFHRKCV 128

Query: 136 DSWLVRVSACPLCRSSVRLDME 158
           D+WLV+VSACP+CR+ V L  E
Sbjct: 129 DAWLVKVSACPICRTRVHLGSE 150

[Close]

BLAST of Carg23480 vs. TrEMBL
Match: tr|A0A2C9VMD0|A0A2C9VMD0_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G025800 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.1e-23
Identity = 47/80 (58.75%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 76  TDSSSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQWCRKLGGCGHIYHRKCI 135
           +DS+ G S + LKKL QF+FS    P  + DC +CL G R+GQWCRKL  CGH++HRKCI
Sbjct: 73  SDSADGLSPKGLKKLPQFKFSRRTKPEDEADCVVCLEGIRQGQWCRKLIACGHVFHRKCI 132

Query: 136 DSWLVRVSACPLCRSSVRLD 156
           D+WL++VSACP+CR+ V LD
Sbjct: 133 DAWLIKVSACPVCRTRVWLD 152

[Close]

BLAST of Carg23480 vs. TrEMBL
Match: tr|H8ZJ02|H8ZJ02_MANES (RING-H2 zinc finger protein OS=Manihot esculenta OX=3983 GN=RZF PE=2 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.2e-23
Identity = 47/80 (58.75%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 76  TDSSSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQWCRKLGGCGHIYHRKCI 135
           +DS+ G S + LKKL QF+FS    P  + DC +CL G R+GQWCRKL  CGH++HRKCI
Sbjct: 73  SDSAVGLSPKGLKKLPQFKFSRRTKPEDEADCVVCLEGIRQGQWCRKLIACGHVFHRKCI 132

Query: 136 DSWLVRVSACPLCRSSVRLD 156
           D+WL++VSACP+CR+ V LD
Sbjct: 133 DAWLIKVSACPVCRTRVWLD 152

The following BLAST results are available for this feature:

BLAST of Carg23480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022938060.1	1.6e-55	99.43	RING-H2 finger protein ATL56-like [Cucurbita moschata]	[more]
XP_023538017.1	5.1e-54	98.00	RING-H2 finger protein ATL56-like [Cucurbita pepo subsp. pepo]	[more]
XP_022965979.1	2.5e-53	96.00	RING-H2 finger protein ATL56-like [Cucurbita maxima]	[more]
XP_004149098.1	7.4e-45	80.81	PREDICTED: RING-H2 finger protein ATL56 [Cucumis sativus]	[more]
XP_008452306.1	7.4e-45	80.81	PREDICTED: RING-H2 finger protein ATL56 [Cucumis melo]	[more]

BLAST of Carg23480 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G18670.1	7.4e-23	53.09	RING/U-box superfamily protein	[more]
AT4G30370.1	1.8e-21	51.35	RING/U-box superfamily protein	[more]
AT5G01880.1	3.8e-11	39.73	RING/U-box superfamily protein	[more]
AT3G11110.1	8.5e-11	53.19	RING/U-box superfamily protein	[more]
AT3G10910.1	1.1e-10	34.62	RING/U-box superfamily protein	[more]

BLAST of Carg23480 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9ZV51\|ATL56_ARATH	1.3e-21	53.09	RING-H2 finger protein ATL56 OS=Arabidopsis thaliana OX=3702 GN=ATL56 PE=2 SV=1	[more]
sp\|Q9M0C3\|ATL14_ARATH	3.3e-20	51.35	RING-H2 finger protein ATL14 OS=Arabidopsis thaliana OX=3702 GN=ATL14 PE=2 SV=1	[more]
sp\|Q9LZV8\|ATL74_ARATH	6.9e-10	39.73	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1	[more]
sp\|Q9SRM0\|ATL66_ARATH	1.5e-09	53.19	RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1	[more]
sp\|Q9SG96\|ATL72_ARATH	2.0e-09	34.62	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1	[more]

BLAST of Carg23480 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BTK8\|A0A1S3BTK8_CUCME	4.9e-45	80.81	RING-H2 finger protein ATL56 OS=Cucumis melo OX=3656 GN=LOC103493368 PE=4 SV=1	[more]
tr\|A0A0A0LJ61\|A0A0A0LJ61_CUCSA	4.9e-45	80.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G047820 PE=4 SV=1	[more]
tr\|A0A067KDU1\|A0A067KDU1_JATCU	3.1e-23	56.10	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_07823 PE=4 SV=1	[more]
tr\|A0A2C9VMD0\|A0A2C9VMD0_MANES	3.1e-23	58.75	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G025800 PE=4 SV=...	[more]
tr\|H8ZJ02\|H8ZJ02_MANES	5.2e-23	58.75	RING-H2 zinc finger protein OS=Manihot esculenta OX=3983 GN=RZF PE=2 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23480-RA	Carg23480-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 107..148 e-value: 2.5E-6 score: 37.0
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 106..149 e-value: 5.2E-12 score: 45.8
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 107..149 score: 11.914
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 82..159 e-value: 1.2E-18 score: 68.0
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 14..159
None	No IPR available	PANTHER	PTHR14155:SF93	RING-H2 FINGER PROTEIN ATL19-RELATED	coord: 14..159
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 87..156

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23480	MELO3C004093	Melon (DHL92) v3.5.1	carmeB0488
Carg23480	Cucsa.089780	Cucumber (Gy14) v1	carcgyB0553
Carg23480	CmaCh12G009980	Cucurbita maxima (Rimu)	carcmaB0670
Carg23480	CmoCh12G010080	Cucurbita moschata (Rifu)	carcmoB0652
Carg23480	Cp4.1LG07g08400	Cucurbita pepo (Zucchini)	carcpeB0676
Carg23480	CsGy2G005710	Cucumber (Gy14) v2	carcgybB0491
Carg23480	MELO3C004093.2	Melon (DHL92) v3.6.1	carmedB0494
Carg23480	CsaV3_2G007920	Cucumber (Chinese Long) v3	carcucB0520
Carg23480	Cla97C11G218430	Watermelon (97103) v2	carwmbB0506
Carg23480	Bhi06G001176	Wax gourd	carwgoB0586

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None