CsaV3_2G005120 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G005120
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Pentatricopeptide repeat
Location	chr2 : 2793072 .. 2795609 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGACCACAACTATAGCTTCTTCTTCAACTTGCTCCATTTTCTTCAACCCTCTTCTCAATTTCACCCTTTCAAATCCCATAACTCCACCCAAATCCCTATTCATTTCCACCATTGTTGCAGTTTCCGATGGATTGCAGCCTCAAACATTGACCATTTGCGCTAGAAAGAAGAAGAGAAGTCCTGGGTTTCAGAGATCAACCAAATTAGTGTTTGAATTGGCTTCTCTCTTAGCCTCCAATCTCAAGATCTTACCGCCGCCTCTGGATTTAGTCGTCGCGGAATTGAGCGGAGGAGATGGTAACGGAGGTGGTTCGAGGCTGTGGAGGGGTTTTGGTGGAGGTGACTATGATGGATGGAGAGGTAAAAGGAAGAAGACGCCGTTGTTGATTGGGTTTTTGATTGTTTGTGGTTTGGTTTTGTTGTTTGTGACTGATTTTGAGATCAATGTGGTTTGTGGGGTTCTTGGATTTGCTGTATTCGGTGTTGCATTGATTCAATTGTGGCAGAAAATCGGGATTTCGAAAGATTTTGTTTTGGGGTTTGGCCTTTTTGGCATTTTGATTGCCTTGGGATTGAGAAGATCTGAAGTGCAAAGATGGGTTGGGAAATTAGGGATTTACAGTTCAAAGAGGAAGAGTTTGAGAAGAAAACTTAAAGGTAGGAGAATCTTCTGAGCGAGCTATTCGATAAAGACTATATTATCTATTATGCATTTTTTTTTCTTCGAATGAGATTATAGCGAGAGATTTAATAGATATTTCCCCTTCATATCTTTAACACAATTCTTACTCGATGGTTCATATCCATAATCTTCAATCTCGCATTTCTGATCGAGAACGAAGATAATGAACCAGAATTATTACACTGTTATGAGTTTCTTGGAAAAATGCAAAACCATGAAGGAGTTGAAACAAATTCACAGTCTGATGATCACAACTTCAGTCGTCAAGAACATAATCCCTTGCAGCAGACTTATTGATTTTTGCGCAAATTCCGAATTGGGTGACATTGAATATGCGAGAACAGTATTCGATCAAATTAATCAGCGGACTGTCTACATCTGGAACTCGATGATCAAAGGGTACTGCAATGGCGGTGACAAGTTTGGAGCTCTGTTTATGTATGAAGAAATGCAGCGTAAAGGCTTCTCCCCGGACCATTTCACCTTCCCTTTTGTGTTGAAAGTTTGCTCCATAATCGATCTTCTTGTGTATGGACAAAGTGTTCATAATCGAATCGTGAAAACTGGGTTTGAATTAGATGTGTACACTTCTTCTTGTTTGCTCAATATGTATGTTTCTTGTGGAGATTTGAATTCTGGGCTTAAGGTGTTTGAGTTTATTCCCAAATGGAATGTGGTCGCTTGGACTTCCTTAATTGCAGGGTTTGTGAACAATGATCAGCCCAAAGAAGCTTTGAGATTGTTCAAAGATATGGAGAATGAAGGTGTGGAGCCTAATGAAATCACCATGACCACAGCTTTGGCTGCAGCTGCTCGTTGCAGGGATATTCATACTGGGAAACTGGTCCACGATCGTCTTCGCCAACTTGGTTTTGATCCATTTGACACAAACTCCTGCTTCAATGTAATACTTGCAACTGCAATCATGGACATGTATGCAAAATGTGGCAAGTTGGTGACTGCACGGAATCTGTTTGATAAGATGCCTCAAAGAAACTTGGTTGTTTGGAATTCAATGATCAGTGCTTATAGTCAATATGGTCGAGGAGCAGAGGCTTTGCGTCTTTTCGTTGACATGGAAATGGCTGGGTTTGTTCCTAATAAAGCAACGTTTTTGAGTGTGATAAGTGCTTGCACCCATATGGGGTTTCGATCAACAGGACGAAGTTTACATGCTCGTGCGTTGAGAGCAAGTTTCCACGAGTTTGTTGCCATTGGAACTGCTCTTATGGACATGTATGCCAAGGCTGGAGATGCAGATACTGCATTGAAGATCTTCAGCAAGTTGAGGAAGAAAGATGTAATGGCGTGGACGACGATGATATCAGGCTTAGCAATCCAAGGCAAAGGCAAAGAAGCGCTGAATGTGTTCAGAAGAATGGAAGAAGAAGCTGAAGTTGCTCCTGACCAAATCACCTACATAGCAGTTCTGTGGGCATGCAGCCATCTCGGGCTGGTCGAAGAAGGTCAGAAACAGTTTACCTCCATGACTGAGGTTTACGGTATTGAGCCTACCATGGAGCATTATGGCTGCATGATTGATCTTTTGAGTCGTGCAGGCCACTCCAAAGAGGCCGAGGAGCTCCTGATGAAAATGCCAACGCAGCCTAATGCAACAATCTTGAGTTCTATTCTGAATGGTTGTGAAATGTATGGAAATGTAGGTCTTGCCAACAGAGTGAAAAGTCACATAGTAGAGTTGGAGAATTCTAGTAGTGGTGTTTATGTACTTTTGTCAAATATTCATGCCAAAGCCTGTAATTGGCAGGAAATGAAGCTGGCTAGAGATATGTTGAAGCATAAAAATATTGGGAAAACTCTTGGGAACAGTTTTGTTGAAATAAAGCCTTAG

mRNA sequence

ATGCAGACCACAACTATAGCTTCTTCTTCAACTTGCTCCATTTTCTTCAACCCTCTTCTCAATTTCACCCTTTCAAATCCCATAACTCCACCCAAATCCCTATTCATTTCCACCATTGTTGCAGTTTCCGATGGATTGCAGCCTCAAACATTGACCATTTGCGCTAGAAAGAAGAAGAGAAGTCCTGGGTTTCAGAGATCAACCAAATTAGTGTTTGAATTGGCTTCTCTCTTAGCCTCCAATCTCAAGATCTTACCGCCGCCTCTGGATTTAGTCGTCGCGGAATTGAGCGGAGGAGATGGTAACGGAGGTGGTTCGAGGCTGTGGAGGGGTTTTGGTGGAGGTGACTATGATGGATGGAGAGGTAAAAGGAAGAAGACGCCGTTGTTGATTGGGTTTTTGATTGTTTGTGGTTTGGTTTTGTTGTTTGTGACTGATTTTGAGATCAATGTGGTTTGTGGGGTTCTTGGATTTGCTGTATTCGGTGTTGCATTGATTCAATTGTGGCAGAAAATCGGGATTTCGAAAGATTTTGTTTTGGGGTTTGGCCTTTTTGGCATTTTGATTGCCTTGGGATTGAGAAGATCTGAAGTGCAAAGATGGGTTGGGAAATTAGGGATTTACAGTTCAAAGAGGAAGAGTTTGAGAAGAAAACTTAAAGTCGTCAAGAACATAATCCCTTGCAGCAGACTTATTGATTTTTGCGCAAATTCCGAATTGGGTGACATTGAATATGCGAGAACAGTATTCGATCAAATTAATCAGCGGACTGTCTACATCTGGAACTCGATGATCAAAGGGTACTGCAATGGCGGTGACAAGTTTGGAGCTCTGTTTATGTATGAAGAAATGCAGCGTAAAGGCTTCTCCCCGGACCATTTCACCTTCCCTTTTGTGTTGAAAGTTTGCTCCATAATCGATCTTCTTGTGTATGGACAAAGTGTTCATAATCGAATCGTGAAAACTGGGTTTGAATTAGATGTGTACACTTCTTCTTGTTTGCTCAATATGTATGTTTCTTGTGGAGATTTGAATTCTGGGCTTAAGGTGTTTGAGTTTATTCCCAAATGGAATGTGGTCGCTTGGACTTCCTTAATTGCAGGGTTTGTGAACAATGATCAGCCCAAAGAAGCTTTGAGATTGTTCAAAGATATGGAGAATGAAGGTGTGGAGCCTAATGAAATCACCATGACCACAGCTTTGGCTGCAGCTGCTCGTTGCAGGGATATTCATACTGGGAAACTGGTCCACGATCGTCTTCGCCAACTTGGTTTTGATCCATTTGACACAAACTCCTGCTTCAATGAAATGAAGCTGGCTAGAGATATGTTGAAGCATAAAAATATTGGGAAAACTCTTGGGAACAGTTTTGTTGAAATAAAGCCTTAG

Coding sequence (CDS)

ATGCAGACCACAACTATAGCTTCTTCTTCAACTTGCTCCATTTTCTTCAACCCTCTTCTCAATTTCACCCTTTCAAATCCCATAACTCCACCCAAATCCCTATTCATTTCCACCATTGTTGCAGTTTCCGATGGATTGCAGCCTCAAACATTGACCATTTGCGCTAGAAAGAAGAAGAGAAGTCCTGGGTTTCAGAGATCAACCAAATTAGTGTTTGAATTGGCTTCTCTCTTAGCCTCCAATCTCAAGATCTTACCGCCGCCTCTGGATTTAGTCGTCGCGGAATTGAGCGGAGGAGATGGTAACGGAGGTGGTTCGAGGCTGTGGAGGGGTTTTGGTGGAGGTGACTATGATGGATGGAGAGGTAAAAGGAAGAAGACGCCGTTGTTGATTGGGTTTTTGATTGTTTGTGGTTTGGTTTTGTTGTTTGTGACTGATTTTGAGATCAATGTGGTTTGTGGGGTTCTTGGATTTGCTGTATTCGGTGTTGCATTGATTCAATTGTGGCAGAAAATCGGGATTTCGAAAGATTTTGTTTTGGGGTTTGGCCTTTTTGGCATTTTGATTGCCTTGGGATTGAGAAGATCTGAAGTGCAAAGATGGGTTGGGAAATTAGGGATTTACAGTTCAAAGAGGAAGAGTTTGAGAAGAAAACTTAAAGTCGTCAAGAACATAATCCCTTGCAGCAGACTTATTGATTTTTGCGCAAATTCCGAATTGGGTGACATTGAATATGCGAGAACAGTATTCGATCAAATTAATCAGCGGACTGTCTACATCTGGAACTCGATGATCAAAGGGTACTGCAATGGCGGTGACAAGTTTGGAGCTCTGTTTATGTATGAAGAAATGCAGCGTAAAGGCTTCTCCCCGGACCATTTCACCTTCCCTTTTGTGTTGAAAGTTTGCTCCATAATCGATCTTCTTGTGTATGGACAAAGTGTTCATAATCGAATCGTGAAAACTGGGTTTGAATTAGATGTGTACACTTCTTCTTGTTTGCTCAATATGTATGTTTCTTGTGGAGATTTGAATTCTGGGCTTAAGGTGTTTGAGTTTATTCCCAAATGGAATGTGGTCGCTTGGACTTCCTTAATTGCAGGGTTTGTGAACAATGATCAGCCCAAAGAAGCTTTGAGATTGTTCAAAGATATGGAGAATGAAGGTGTGGAGCCTAATGAAATCACCATGACCACAGCTTTGGCTGCAGCTGCTCGTTGCAGGGATATTCATACTGGGAAACTGGTCCACGATCGTCTTCGCCAACTTGGTTTTGATCCATTTGACACAAACTCCTGCTTCAATGAAATGAAGCTGGCTAGAGATATGTTGAAGCATAAAAATATTGGGAAAACTCTTGGGAACAGTTTTGTTGAAATAAAGCCTTAG

Protein sequence

MQTTTIASSSTCSIFFNPLLNFTLSNPITPPKSLFISTIVAVSDGLQPQTLTICARKKKRSPGFQRSTKLVFELASLLASNLKILPPPLDLVVAELSGGDGNGGGSRLWRGFGGGDYDGWRGKRKKTPLLIGFLIVCGLVLLFVTDFEINVVCGVLGFAVFGVALIQLWQKIGISKDFVLGFGLFGILIALGLRRSEVQRWVGKLGIYSSKRKSLRRKLKVVKNIIPCSRLIDFCANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGDKFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFNEMKLARDMLKHKNIGKTLGNSFVEIKP

Homology

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BLAST of CsaV3_2G005120 vs. NCBI nr
Match: XP_004139361.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At3g05240 [Cucumis sativus] >KGN60889.1 hypothetical protein Csa_2G021600 [Cucumis sativus])

HSP 1 Score: 456.4 bits (1173), Expect = 1.1e-124
Identity = 220/238 (92.44%), Postives = 222/238 (93.28%), Query Frame = 0


Query: 214 SLRRKLKVVKNIIPCSRLIDFCANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGD 273
           SL     VVKNIIPCSRLIDFCANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGD
Sbjct: 26  SLMITTSVVKNIIPCSRLIDFCANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGD 85

Query: 274 KFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSC 333
           KFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSC
Sbjct: 86  KFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSC 145

Query: 334 LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN 393
           LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN
Sbjct: 146 LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN 205

Query: 394 EITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFNEMKLARDMLKHKNIGK 452
           EITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFN +     M  +   GK
Sbjct: 206 EITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFNVILATAIMDMYAKCGK 263

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BLAST of CsaV3_2G005120 vs. NCBI nr
Match: XP_008454853.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At3g05240 [Cucumis melo] >AAO45757.1 selenium binding protein-like protein [Cucumis melo subsp. melo])

HSP 1 Score: 431.4 bits (1108), Expect = 3.8e-117
Identity = 210/238 (88.24%), Postives = 214/238 (89.92%), Query Frame = 0


Query: 214 SLRRKLKVVKNIIPCSRLIDFCANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGD 273
           SL  K  VVKNIIPCSRLIDFCANSELGDIEYARTVFDQ +Q TVY+WNSMIKGYCNGGD
Sbjct: 26  SLMIKTSVVKNIIPCSRLIDFCANSELGDIEYARTVFDQTDQLTVYVWNSMIKGYCNGGD 85

Query: 274 KFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSC 333
           KFGALFMYEEMQRKGF PDHFTFPFVLKVCS IDLLVYGQSVHNRIVKTGFELDVYTSSC
Sbjct: 86  KFGALFMYEEMQRKGFYPDHFTFPFVLKVCSAIDLLVYGQSVHNRIVKTGFELDVYTSSC 145

Query: 334 LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN 393
           LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN
Sbjct: 146 LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN 205

Query: 394 EITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFNEMKLARDMLKHKNIGK 452
           EITMTTALAAAARCRDIHTGKLV  RLRQLG DPF TNS FN +     M  +   GK
Sbjct: 206 EITMTTALAAAARCRDIHTGKLVRYRLRQLGLDPFHTNSRFNVILATAIMDMYAKCGK 263

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BLAST of CsaV3_2G005120 vs. NCBI nr
Match: XP_004139360.1 (PREDICTED: uncharacterized protein LOC101213268 [Cucumis sativus] >KGN60890.1 hypothetical protein Csa_2G021610 [Cucumis sativus])

HSP 1 Score: 424.9 bits (1091), Expect = 3.6e-115
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0


Query: 1   MQTTTIASSSTCSIFFNPLLNFTLSNPITPPKSLFISTIVAVSDGLQPQTLTICARKKKR 60
           MQTTTIASSSTCSIFFNPLLNFTLSNPITPPKSLFISTIVAVSDGLQPQTLTICARKKKR
Sbjct: 1   MQTTTIASSSTCSIFFNPLLNFTLSNPITPPKSLFISTIVAVSDGLQPQTLTICARKKKR 60

Query: 61  SPGFQRSTKLVFELASLLASNLKILPPPLDLVVAELSGGDGNGGGSRLWRGFGGGDYDGW 120
           SPGFQRSTKLVFELASLLASNLKILPPPLDLVVAELSGGDGNGGGSRLWRGFGGGDYDGW
Sbjct: 61  SPGFQRSTKLVFELASLLASNLKILPPPLDLVVAELSGGDGNGGGSRLWRGFGGGDYDGW 120

Query: 121 RGKRKKTPLLIGFLIVCGLVLLFVTDFEINVVCGVLGFAVFGVALIQLWQKIGISKDFVL 180
           RGKRKKTPLLIGFLIVCGLVLLFVTDFEINVVCGVLGFAVFGVALIQLWQKIGISKDFVL
Sbjct: 121 RGKRKKTPLLIGFLIVCGLVLLFVTDFEINVVCGVLGFAVFGVALIQLWQKIGISKDFVL 180

Query: 181 GFGLFGILIALGLRRSEVQRWVGKLGIYSSKRKSLRRKLK 221
           GFGLFGILIALGLRRSEVQRWVGKLGIYSSKRKSLRRKLK
Sbjct: 181 GFGLFGILIALGLRRSEVQRWVGKLGIYSSKRKSLRRKLK 220

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BLAST of CsaV3_2G005120 vs. NCBI nr
Match: XP_022946762.1 (putative pentatricopeptide repeat-containing protein At3g05240 [Cucurbita moschata])

HSP 1 Score: 403.7 bits (1036), Expect = 8.6e-109
Identity = 194/238 (81.51%), Postives = 207/238 (86.97%), Query Frame = 0


Query: 214 SLRRKLKVVKNIIPCSRLIDFCANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGD 273
           SL      +KNIIPCSRLIDFCANSELGDIEYAR+VFD I+QR+VYIWNSMIKGYCNG D
Sbjct: 40  SLMVTTSFIKNIIPCSRLIDFCANSELGDIEYARSVFDGIDQRSVYIWNSMIKGYCNGSD 99

Query: 274 KFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSC 333
           KF ALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLL YGQ VH+RIVKTGFELD YT SC
Sbjct: 100 KFEALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLRYGQGVHSRIVKTGFELDSYTCSC 159

Query: 334 LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN 393
           LLNMYVSCGDL+SGLKVFEFIPKWNVVAWTSLIAGFVNN Q +EALRLF+DMENEGVEPN
Sbjct: 160 LLNMYVSCGDLSSGLKVFEFIPKWNVVAWTSLIAGFVNNHQAREALRLFQDMENEGVEPN 219

Query: 394 EITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFNEMKLARDMLKHKNIGK 452
           EITM TALAAAARCRDI  GK VH+RL QLG+DPF+TNSCFN +     M  +   GK
Sbjct: 220 EITMATALAAAARCRDIDAGKFVHNRLWQLGYDPFETNSCFNVILATAIMDMYAKCGK 277

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BLAST of CsaV3_2G005120 vs. NCBI nr
Match: XP_023545826.1 (putative pentatricopeptide repeat-containing protein At3g05240 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 401.7 bits (1031), Expect = 3.3e-108
Identity = 193/238 (81.09%), Postives = 206/238 (86.55%), Query Frame = 0


Query: 214 SLRRKLKVVKNIIPCSRLIDFCANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGD 273
           SL      +KNIIPCSRLIDFCANSELGDIEYAR+VFD I+QR+VYIWNSMIKGYCNG D
Sbjct: 26  SLMVTTSFIKNIIPCSRLIDFCANSELGDIEYARSVFDGIDQRSVYIWNSMIKGYCNGSD 85

Query: 274 KFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSC 333
           KF ALFMYEEMQRKGFSPDHFTFPFVLKVCSII+LL YGQ VH+RIVKTGFELD YT SC
Sbjct: 86  KFEALFMYEEMQRKGFSPDHFTFPFVLKVCSIINLLRYGQGVHSRIVKTGFELDSYTCSC 145

Query: 334 LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN 393
           LLNMYVSCGDL+SGLKVFEFIPKWNVVAWTSLIAGFVNNDQ  EALRLF+DMENEGVEPN
Sbjct: 146 LLNMYVSCGDLSSGLKVFEFIPKWNVVAWTSLIAGFVNNDQASEALRLFQDMENEGVEPN 205

Query: 394 EITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFNEMKLARDMLKHKNIGK 452
           EITM TALAAAARCRDI  GK VH+ L QLG+DPF+TNSCFN +     M  +   GK
Sbjct: 206 EITMATALAAAARCRDIDAGKFVHNHLCQLGYDPFETNSCFNVILATAIMDMYAKCGK 263

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BLAST of CsaV3_2G005120 vs. TAIR10
Match: AT3G05240.1 (mitochondrial editing factor 19)

HSP 1 Score: 247.7 bits (631), Expect = 1.4e-65
Identity = 114/212 (53.77%), Postives = 156/212 (73.58%), Query Frame = 0


Query: 218 KLKVVKNIIPCSRLIDFCAN-SELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGDKFG 277
           K  V++N+IP SRLIDFC    E  ++ YAR+VF+ I+  +VYIWNSMI+GY N  +   
Sbjct: 31  KSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWNSMIRGYSNSPNPDK 90

Query: 278 ALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSCLLN 337
           AL  Y+EM RKG+SPD+FTFP+VLK CS +  + +G  VH  +VKTGFE+++Y S+CLL+
Sbjct: 91  ALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLH 150

Query: 338 MYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEIT 397
           MY+ CG++N GL+VFE IP+WNVVAW SLI+GFVNN++  +A+  F++M++ GV+ NE  
Sbjct: 151 MYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFREMQSNGVKANETI 210

Query: 398 MTTALAAAARCRDIHTGKLVHDRLRQLGFDPF 429
           M   L A  RC+DI TGK  H  L+ LGFDP+
Sbjct: 211 MVDLLVACGRCKDIVTGKWFHGFLQGLGFDPY 242

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BLAST of CsaV3_2G005120 vs. TAIR10
Match: AT3G12770.1 (mitochondrial editing factor 22)

HSP 1 Score: 145.6 bits (366), Expect = 7.7e-35
Identity = 67/193 (34.72%), Postives = 111/193 (57.51%), Query Frame = 0


Query: 236 ANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGDKFGALFMYEEMQRKGFSPDHFT 295
           A+S  GDI +AR VFD + +  ++ WN++I+GY        AL MY  MQ    SPD FT
Sbjct: 62  ASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFT 121

Query: 296 FPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEF-- 355
           FP +LK CS +  L  G+ VH ++ + GF+ DV+  + L+ +Y  C  L S   VFE   
Sbjct: 122 FPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLP 181

Query: 356 IPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTG 415
           +P+  +V+WT++++ +  N +P EAL +F  M    V+P+ + + + L A    +D+  G
Sbjct: 182 LPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQG 241

Query: 416 KLVHDRLRQLGFD 427
           + +H  + ++G +
Sbjct: 242 RSIHASVVKMGLE 254

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BLAST of CsaV3_2G005120 vs. TAIR10
Match: AT4G21065.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 143.3 bits (360), Expect = 3.8e-34
Identity = 65/184 (35.33%), Postives = 118/184 (64.13%), Query Frame = 0


Query: 243 IEYARTVFDQINQR-TVYIWNSMIKGYCNGGDKFGALFMYEEMQRKGF-SPDHFTFPFVL 302
           + YA  VF +I +   V+IWN++I+GY   G+   A  +Y EM+  G   PD  T+PF++
Sbjct: 69  MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLI 128

Query: 303 KVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVV 362
           K  + +  +  G+++H+ ++++GF   +Y  + LL++Y +CGD+ S  KVF+ +P+ ++V
Sbjct: 129 KAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLV 188

Query: 363 AWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGKLVHDRL 422
           AW S+I GF  N +P+EAL L+ +M ++G++P+  T+ + L+A A+   +  GK VH  +
Sbjct: 189 AWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYM 248

Query: 423 RQLG 425
            ++G
Sbjct: 249 IKVG 252

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BLAST of CsaV3_2G005120 vs. TAIR10
Match: AT2G33680.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 139.8 bits (351), Expect = 4.2e-33
Identity = 91/283 (32.16%), Postives = 139/283 (49.12%), Query Frame = 0


Query: 184 LFGILIALGLRRSEVQRWVGKLG-----IYSSKRKSLRR---KLKVVKNIIPCSRLIDFC 243
           LF  + + G++ SE    VG L       Y  + K L     KL   +++   + L+D  
Sbjct: 309 LFSRMFSAGIKPSE-YTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMY 368

Query: 244 ANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGDKFGALFMYEEMQRKGFSPDHFT 303
           A +  G +  AR  FD + +R V +W S+I GY    D   AL +Y  M+  G  P+  T
Sbjct: 369 AKA--GCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPT 428

Query: 304 FPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIP 363
              VLK CS +  L  G+ VH   +K GF L+V   S L  MY  CG L  G  VF   P
Sbjct: 429 MASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTP 488

Query: 364 KWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGKL 423
             +VV+W ++I+G  +N Q  EAL LF++M  EG+EP+++T    ++A +    +  G  
Sbjct: 489 NKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWF 548

Query: 424 VHDRLR-QLGFDP--------FDTNSCFNEMKLARDMLKHKNI 450
             + +  Q+G DP         D  S   ++K A++ ++  NI
Sbjct: 549 YFNMMSDQIGLDPKVDHYACMVDLLSRAGQLKEAKEFIESANI 588

[Close]

BLAST of CsaV3_2G005120 vs. TAIR10
Match: AT5G55740.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 139.4 bits (350), Expect = 5.5e-33
Identity = 71/189 (37.57%), Postives = 107/189 (56.61%), Query Frame = 0


Query: 229 SRLIDFCANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGDKFGALFMYEEMQRKG 288
           ++L+ F A  +   +E A  +F ++  R V+ W ++I   C  G   GAL  + EM    
Sbjct: 111 TKLVIFYAKCDA--LEIAEVLFSKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENE 170

Query: 289 FSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGL 348
             PD+F  P V K C  +    +G+ VH  +VK+G E  V+ +S L +MY  CG L+   
Sbjct: 171 IFPDNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDAS 230

Query: 349 KVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCR 408
           KVF+ IP  N VAW +L+ G+V N + +EA+RLF DM  +GVEP  +T++T L+A+A   
Sbjct: 231 KVFDEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMG 290

Query: 409 DIHTGKLVH 418
            +  GK  H
Sbjct: 291 GVEEGKQSH 297

[Close]

BLAST of CsaV3_2G005120 vs. Swiss-Prot
Match: sp|Q9MA95|PP214_ARATH (Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E82 PE=3 SV=2)

HSP 1 Score: 247.7 bits (631), Expect = 2.6e-64
Identity = 114/212 (53.77%), Postives = 156/212 (73.58%), Query Frame = 0


Query: 218 KLKVVKNIIPCSRLIDFCAN-SELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGDKFG 277
           K  V++N+IP SRLIDFC    E  ++ YAR+VF+ I+  +VYIWNSMI+GY N  +   
Sbjct: 31  KSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWNSMIRGYSNSPNPDK 90

Query: 278 ALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSCLLN 337
           AL  Y+EM RKG+SPD+FTFP+VLK CS +  + +G  VH  +VKTGFE+++Y S+CLL+
Sbjct: 91  ALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLH 150

Query: 338 MYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEIT 397
           MY+ CG++N GL+VFE IP+WNVVAW SLI+GFVNN++  +A+  F++M++ GV+ NE  
Sbjct: 151 MYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFREMQSNGVKANETI 210

Query: 398 MTTALAAAARCRDIHTGKLVHDRLRQLGFDPF 429
           M   L A  RC+DI TGK  H  L+ LGFDP+
Sbjct: 211 MVDLLVACGRCKDIVTGKWFHGFLQGLGFDPY 242

[Close]

BLAST of CsaV3_2G005120 vs. Swiss-Prot
Match: sp|Q9LTV8|PP224_ARATH (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H43 PE=2 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.4e-33
Identity = 67/193 (34.72%), Postives = 111/193 (57.51%), Query Frame = 0


Query: 236 ANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGDKFGALFMYEEMQRKGFSPDHFT 295
           A+S  GDI +AR VFD + +  ++ WN++I+GY        AL MY  MQ    SPD FT
Sbjct: 62  ASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFT 121

Query: 296 FPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEF-- 355
           FP +LK CS +  L  G+ VH ++ + GF+ DV+  + L+ +Y  C  L S   VFE   
Sbjct: 122 FPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLP 181

Query: 356 IPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTG 415
           +P+  +V+WT++++ +  N +P EAL +F  M    V+P+ + + + L A    +D+  G
Sbjct: 182 LPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQG 241

Query: 416 KLVHDRLRQLGFD 427
           + +H  + ++G +
Sbjct: 242 RSIHASVVKMGLE 254

[Close]

BLAST of CsaV3_2G005120 vs. Swiss-Prot
Match: sp|A8MQA3|PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 143.3 bits (360), Expect = 6.8e-33
Identity = 65/184 (35.33%), Postives = 118/184 (64.13%), Query Frame = 0


Query: 243 IEYARTVFDQINQR-TVYIWNSMIKGYCNGGDKFGALFMYEEMQRKGF-SPDHFTFPFVL 302
           + YA  VF +I +   V+IWN++I+GY   G+   A  +Y EM+  G   PD  T+PF++
Sbjct: 69  MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLI 128

Query: 303 KVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVV 362
           K  + +  +  G+++H+ ++++GF   +Y  + LL++Y +CGD+ S  KVF+ +P+ ++V
Sbjct: 129 KAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLV 188

Query: 363 AWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGKLVHDRL 422
           AW S+I GF  N +P+EAL L+ +M ++G++P+  T+ + L+A A+   +  GK VH  +
Sbjct: 189 AWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYM 248

Query: 423 RQLG 425
            ++G
Sbjct: 249 IKVG 252

[Close]

BLAST of CsaV3_2G005120 vs. Swiss-Prot
Match: sp|P93005|PP181_ARATH (Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E19 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 7.6e-32
Identity = 91/283 (32.16%), Postives = 139/283 (49.12%), Query Frame = 0


Query: 184 LFGILIALGLRRSEVQRWVGKLG-----IYSSKRKSLRR---KLKVVKNIIPCSRLIDFC 243
           LF  + + G++ SE    VG L       Y  + K L     KL   +++   + L+D  
Sbjct: 309 LFSRMFSAGIKPSE-YTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMY 368

Query: 244 ANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGDKFGALFMYEEMQRKGFSPDHFT 303
           A +  G +  AR  FD + +R V +W S+I GY    D   AL +Y  M+  G  P+  T
Sbjct: 369 AKA--GCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPT 428

Query: 304 FPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIP 363
              VLK CS +  L  G+ VH   +K GF L+V   S L  MY  CG L  G  VF   P
Sbjct: 429 MASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTP 488

Query: 364 KWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGKL 423
             +VV+W ++I+G  +N Q  EAL LF++M  EG+EP+++T    ++A +    +  G  
Sbjct: 489 NKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWF 548

Query: 424 VHDRLR-QLGFDP--------FDTNSCFNEMKLARDMLKHKNI 450
             + +  Q+G DP         D  S   ++K A++ ++  NI
Sbjct: 549 YFNMMSDQIGLDPKVDHYACMVDLLSRAGQLKEAKEFIESANI 588

[Close]

BLAST of CsaV3_2G005120 vs. Swiss-Prot
Match: sp|Q9FM64|PP431_ARATH (Pentatricopeptide repeat-containing protein At5g55740, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRR21 PE=2 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 9.9e-32
Identity = 71/189 (37.57%), Postives = 107/189 (56.61%), Query Frame = 0


Query: 229 SRLIDFCANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGDKFGALFMYEEMQRKG 288
           ++L+ F A  +   +E A  +F ++  R V+ W ++I   C  G   GAL  + EM    
Sbjct: 111 TKLVIFYAKCDA--LEIAEVLFSKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENE 170

Query: 289 FSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGL 348
             PD+F  P V K C  +    +G+ VH  +VK+G E  V+ +S L +MY  CG L+   
Sbjct: 171 IFPDNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDAS 230

Query: 349 KVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCR 408
           KVF+ IP  N VAW +L+ G+V N + +EA+RLF DM  +GVEP  +T++T L+A+A   
Sbjct: 231 KVFDEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMG 290

Query: 409 DIHTGKLVH 418
            +  GK  H
Sbjct: 291 GVEEGKQSH 297

[Close]

BLAST of CsaV3_2G005120 vs. TrEMBL
Match: tr|A0A0A0LIL6|A0A0A0LIL6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G021600 PE=4 SV=1)

HSP 1 Score: 456.4 bits (1173), Expect = 7.4e-125
Identity = 220/238 (92.44%), Postives = 222/238 (93.28%), Query Frame = 0


Query: 214 SLRRKLKVVKNIIPCSRLIDFCANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGD 273
           SL     VVKNIIPCSRLIDFCANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGD
Sbjct: 26  SLMITTSVVKNIIPCSRLIDFCANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGD 85

Query: 274 KFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSC 333
           KFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSC
Sbjct: 86  KFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSC 145

Query: 334 LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN 393
           LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN
Sbjct: 146 LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN 205

Query: 394 EITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFNEMKLARDMLKHKNIGK 452
           EITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFN +     M  +   GK
Sbjct: 206 EITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFNVILATAIMDMYAKCGK 263

[Close]

BLAST of CsaV3_2G005120 vs. TrEMBL
Match: tr|A0A1S3C0R4|A0A1S3C0R4_CUCME (putative pentatricopeptide repeat-containing protein At3g05240 OS=Cucumis melo OX=3656 GN=LOC103495159 PE=4 SV=1)

HSP 1 Score: 431.4 bits (1108), Expect = 2.5e-117
Identity = 210/238 (88.24%), Postives = 214/238 (89.92%), Query Frame = 0


Query: 214 SLRRKLKVVKNIIPCSRLIDFCANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGD 273
           SL  K  VVKNIIPCSRLIDFCANSELGDIEYARTVFDQ +Q TVY+WNSMIKGYCNGGD
Sbjct: 26  SLMIKTSVVKNIIPCSRLIDFCANSELGDIEYARTVFDQTDQLTVYVWNSMIKGYCNGGD 85

Query: 274 KFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSC 333
           KFGALFMYEEMQRKGF PDHFTFPFVLKVCS IDLLVYGQSVHNRIVKTGFELDVYTSSC
Sbjct: 86  KFGALFMYEEMQRKGFYPDHFTFPFVLKVCSAIDLLVYGQSVHNRIVKTGFELDVYTSSC 145

Query: 334 LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN 393
           LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN
Sbjct: 146 LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN 205

Query: 394 EITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFNEMKLARDMLKHKNIGK 452
           EITMTTALAAAARCRDIHTGKLV  RLRQLG DPF TNS FN +     M  +   GK
Sbjct: 206 EITMTTALAAAARCRDIHTGKLVRYRLRQLGLDPFHTNSRFNVILATAIMDMYAKCGK 263

[Close]

BLAST of CsaV3_2G005120 vs. TrEMBL
Match: tr|Q84KA5|Q84KA5_CUCME (Selenium binding protein-like protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 431.4 bits (1108), Expect = 2.5e-117
Identity = 210/238 (88.24%), Postives = 214/238 (89.92%), Query Frame = 0


Query: 214 SLRRKLKVVKNIIPCSRLIDFCANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGD 273
           SL  K  VVKNIIPCSRLIDFCANSELGDIEYARTVFDQ +Q TVY+WNSMIKGYCNGGD
Sbjct: 26  SLMIKTSVVKNIIPCSRLIDFCANSELGDIEYARTVFDQTDQLTVYVWNSMIKGYCNGGD 85

Query: 274 KFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSC 333
           KFGALFMYEEMQRKGF PDHFTFPFVLKVCS IDLLVYGQSVHNRIVKTGFELDVYTSSC
Sbjct: 86  KFGALFMYEEMQRKGFYPDHFTFPFVLKVCSAIDLLVYGQSVHNRIVKTGFELDVYTSSC 145

Query: 334 LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN 393
           LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN
Sbjct: 146 LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN 205

Query: 394 EITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFNEMKLARDMLKHKNIGK 452
           EITMTTALAAAARCRDIHTGKLV  RLRQLG DPF TNS FN +     M  +   GK
Sbjct: 206 EITMTTALAAAARCRDIHTGKLVRYRLRQLGLDPFHTNSRFNVILATAIMDMYAKCGK 263

[Close]

BLAST of CsaV3_2G005120 vs. TrEMBL
Match: tr|A0A0A0LFR0|A0A0A0LFR0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G021610 PE=4 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 2.4e-115
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0


Query: 1   MQTTTIASSSTCSIFFNPLLNFTLSNPITPPKSLFISTIVAVSDGLQPQTLTICARKKKR 60
           MQTTTIASSSTCSIFFNPLLNFTLSNPITPPKSLFISTIVAVSDGLQPQTLTICARKKKR
Sbjct: 1   MQTTTIASSSTCSIFFNPLLNFTLSNPITPPKSLFISTIVAVSDGLQPQTLTICARKKKR 60

Query: 61  SPGFQRSTKLVFELASLLASNLKILPPPLDLVVAELSGGDGNGGGSRLWRGFGGGDYDGW 120
           SPGFQRSTKLVFELASLLASNLKILPPPLDLVVAELSGGDGNGGGSRLWRGFGGGDYDGW
Sbjct: 61  SPGFQRSTKLVFELASLLASNLKILPPPLDLVVAELSGGDGNGGGSRLWRGFGGGDYDGW 120

Query: 121 RGKRKKTPLLIGFLIVCGLVLLFVTDFEINVVCGVLGFAVFGVALIQLWQKIGISKDFVL 180
           RGKRKKTPLLIGFLIVCGLVLLFVTDFEINVVCGVLGFAVFGVALIQLWQKIGISKDFVL
Sbjct: 121 RGKRKKTPLLIGFLIVCGLVLLFVTDFEINVVCGVLGFAVFGVALIQLWQKIGISKDFVL 180

Query: 181 GFGLFGILIALGLRRSEVQRWVGKLGIYSSKRKSLRRKLK 221
           GFGLFGILIALGLRRSEVQRWVGKLGIYSSKRKSLRRKLK
Sbjct: 181 GFGLFGILIALGLRRSEVQRWVGKLGIYSSKRKSLRRKLK 220

[Close]

BLAST of CsaV3_2G005120 vs. TrEMBL
Match: tr|A0A1S3C0R6|A0A1S3C0R6_CUCME (uncharacterized protein LOC103495165 OS=Cucumis melo OX=3656 GN=LOC103495165 PE=4 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 1.3e-105
Identity = 202/220 (91.82%), Postives = 208/220 (94.55%), Query Frame = 0


Query: 1   MQTTTIASSSTCSIFFNPLLNFTLSNPITPPKSLFISTIVAVSDGLQPQTLTICARKKKR 60
           M TT IASSS+CSIFFNPLLNFTLSNPITPPKS FIST+VAVSDGLQPQTLTICARKKKR
Sbjct: 1   MHTTAIASSSSCSIFFNPLLNFTLSNPITPPKSPFISTLVAVSDGLQPQTLTICARKKKR 60

Query: 61  SPGFQRSTKLVFELASLLASNLKILPPPLDLVVAELSGGDGNGGGSRLWRGFGGGDYDGW 120
           SPGFQRSTKLV ELASLLASN+KILPPPLDLVVAELSGGDGNGGGSRLWRGFGGGDYDGW
Sbjct: 61  SPGFQRSTKLVLELASLLASNIKILPPPLDLVVAELSGGDGNGGGSRLWRGFGGGDYDGW 120

Query: 121 RGKRKKTPLLIGFLIVCGLVLLFVTDFEINVVCGVLGFAVFGVALIQLWQKIGISKDFVL 180
           RGKRKKTPL IGFL+VCGLVLLFVTDFEIN VCG+LGFAVF VALIQLWQKIGISK FVL
Sbjct: 121 RGKRKKTPLFIGFLMVCGLVLLFVTDFEINEVCGILGFAVFSVALIQLWQKIGISKHFVL 180

Query: 181 GFGLFGILIALGLRRSEVQRWVGKLGIYSSKRKSLRRKLK 221
           GFGLFGILIALGLRRSEVQ+WV KLG YS K KSLRRKLK
Sbjct: 181 GFGLFGILIALGLRRSEVQKWVRKLGFYSPKMKSLRRKLK 220

The following BLAST results are available for this feature:

BLAST of CsaV3_2G005120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139361.1	1.1e-124	92.44	PREDICTED: putative pentatricopeptide repeat-containing protein At3g05240 [Cucum...	[more]
XP_008454853.1	3.8e-117	88.24	PREDICTED: putative pentatricopeptide repeat-containing protein At3g05240 [Cucum...	[more]
XP_004139360.1	3.6e-115	100.00	PREDICTED: uncharacterized protein LOC101213268 [Cucumis sativus] >KGN60890.1 hy...	[more]
XP_022946762.1	8.6e-109	81.51	putative pentatricopeptide repeat-containing protein At3g05240 [Cucurbita moscha...	[more]
XP_023545826.1	3.3e-108	81.09	putative pentatricopeptide repeat-containing protein At3g05240 [Cucurbita pepo s...	[more]

BLAST of CsaV3_2G005120 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05240.1	1.4e-65	53.77	mitochondrial editing factor 19	[more]
AT3G12770.1	7.7e-35	34.72	mitochondrial editing factor 22	[more]
AT4G21065.1	3.8e-34	35.33	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G33680.1	4.2e-33	32.16	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G55740.1	5.5e-33	37.57	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of CsaV3_2G005120 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9MA95\|PP214_ARATH	2.6e-64	53.77	Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis th...	[more]
sp\|Q9LTV8\|PP224_ARATH	1.4e-33	34.72	Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana OX...	[more]
sp\|A8MQA3\|PP330_ARATH	6.8e-33	35.33	Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX...	[more]
sp\|P93005\|PP181_ARATH	7.6e-32	32.16	Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9FM64\|PP431_ARATH	9.9e-32	37.57	Pentatricopeptide repeat-containing protein At5g55740, chloroplastic OS=Arabidop...	[more]

BLAST of CsaV3_2G005120 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LIL6\|A0A0A0LIL6_CUCSA	7.4e-125	92.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G021600 PE=4 SV=1	[more]
tr\|A0A1S3C0R4\|A0A1S3C0R4_CUCME	2.5e-117	88.24	putative pentatricopeptide repeat-containing protein At3g05240 OS=Cucumis melo O...	[more]
tr\|Q84KA5\|Q84KA5_CUCME	2.5e-117	88.24	Selenium binding protein-like protein OS=Cucumis melo subsp. melo OX=412675 PE=4...	[more]
tr\|A0A0A0LFR0\|A0A0A0LFR0_CUCSA	2.4e-115	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G021610 PE=4 SV=1	[more]
tr\|A0A1S3C0R6\|A0A1S3C0R6_CUCME	1.3e-105	91.82	uncharacterized protein LOC103495165 OS=Cucumis melo OX=3656 GN=LOC103495165 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0080156	mitochondrial mRNA modification
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G005120.1	CsaV3_2G005120.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 358..403 e-value: 4.2E-13 score: 49.1 coord: 257..303 e-value: 2.0E-10 score: 40.5
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 360..394 e-value: 2.2E-8 score: 31.8 coord: 259..292 e-value: 2.2E-8 score: 31.8
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 224..256 score: 5.492
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 292..326 score: 5.196
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 257..291 score: 12.189
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 393..427 score: 7.64
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 327..357 score: 7.103
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 358..392 score: 12.573
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 212..336 e-value: 1.8E-20 score: 75.0 coord: 337..448 e-value: 7.7E-21 score: 76.2
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 224..293 coord: 257..403
None	No IPR available	PANTHER	PTHR24015:SF840	SUBFAMILY NOT NAMED	coord: 224..293 coord: 257..403

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_2G005120	CSPI02G03790	Wild cucumber (PI 183967)	cpicucB080
CsaV3_2G005120	Cucsa.091620	Cucumber (Gy14) v1	cgycucB097
CsaV3_2G005120	CmaCh05G011490	Cucurbita maxima (Rimu)	cmacucB0934
CsaV3_2G005120	CmoCh05G011600	Cucurbita moschata (Rifu)	cmocucB0924
CsaV3_2G005120	Cp4.1LG11g09480	Cucurbita pepo (Zucchini)	cpecucB0114
CsaV3_2G005120	CsGy2G003880	Cucumber (Gy14) v2	cgybcucB064
CsaV3_2G005120	Carg12892	Silver-seed gourd	carcucB0940
CsaV3_2G005120	Cla019878	Watermelon (97103) v1	cucwmB159
CsaV3_2G005120	MELO3C004280	Melon (DHL92) v3.5.1	cucmeB141
CsaV3_2G005120	ClCG02G015920	Watermelon (Charleston Gray)	cucwcgB137
CsaV3_2G005120	Lsi11G005290	Bottle gourd (USVL1VR-Ls)	cuclsiB108
CsaV3_2G005120	MELO3C004280.2	Melon (DHL92) v3.6.1	cucmedB134
CsaV3_2G005120	Cla97C02G041690	Watermelon (97103) v2	cucwmbB123
CsaV3_2G005120	Bhi05G001655	Wax gourd	cucwgoB157

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G005120	Silver-seed gourd	carcucB0754
CsaV3_2G005120	Cucurbita maxima (Rimu)	cmacucB0202
CsaV3_2G005120	Cucurbita moschata (Rifu)	cmocucB0185
CsaV3_2G005120	Cucurbita pepo (Zucchini)	cpecucB0010
CsaV3_2G005120	Cucurbita pepo (Zucchini)	cpecucB1014