Cp4.1LG11g09480 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG11g09480
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Pentatricopeptide repeat-containing protein
Location	Cp4.1LG11 : 7982472 .. 7984511 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GATGAATTTAGGGTAAATTTTCAAAAAAAAATTGTGTACTCCGAAGAGTGGATCCCAACGGTCATTCTCATTGGTCATTTCCTGGATCCCTTCGGCCGAGAGGCAAAGCATCAGAGTAAAATGCAGACCACAGCCATAGCTCCTTCTTCAAATCCCTCCATTTTCTTCAACCCACTTCTCAATTTCACCATTTCAAACCCCTTAATTCCATCCAACTCGCCATTTCTCTCGACCCTTGTTGCAGTTTCCGATGGATTTCGGGCTCAAACATCGATCGTTTGCGCCAGGAAGAAGAGGAGGAGACCCGTGTTTCTGAGATCGACCAAATTAGTGCTTGAATTGGCGTCTCTCTTTGCCTCCAATCTTAAGATCTTACCGCCGCCTCTGGATTTGGTCGTTGCGGAATTGAGCGGCGGAAATGGTAATGGAGGTGGTTCGCGGTTGTGGAGGAGTTTTGGTGGAGGCGGCTATGATGGATGGAGAGGTAAGAGGAAGAAAACCCCATTGTTGATTGGGTTTTTGATTCTTTGTGGTCTTGCTTTGTGCGTTTTCACTGATTTTGAGCTCGATGCGATTTGTGGAGCTCTTGGATTTGCTCTGTTTAGCGTTGCATTGATTCAATTGTGGCAGAGAAGTGGGATTTCGAAACATTTCGTTTGGGGATTTGGCCTTTTCGGCATTTTGATTGCCTTGGGATTGAGAAGATCTGAGGTGCAAAAATGGGCTGGAAAATTAGGGTTTTACCGTCCAAAGATCAAGAGTTTGAGAAGAAAAATTGAAGGTAAGAAAATTTTCTGATAGCCCTTCGATTACCTATATATTATATATAAGCAATTTTTTTCTTCTCAAATGAAATGATTGGGACTGGGTGTACCTACCCGTAATTGATAGATAGAAACCTCTGTTCTCCTTAATTTTCTTACTAGTTCTAAAAGTGATTATAAAGTTTCTCGCTATCGAGTGTGATAAAGCCAAGTTTTCAAGCAGCCAAGAACACTGCTGCTGCAACCAATGCACTCTATCTAGAGAGTCATTTGTGATTTCCTTCTCGAACAGGCAGCTAAGAGGTCTTGTTCGAGTGTTGAAAGAACGAAACTCCTACCCTTTGCAGGGTATATGTTCAACAAGTCCGGCAACCCGTCCCCTTTTTTCTATAGCACTGAAGAGCAGTAAACTATAGTGATAGAAGAACCTGGACTAGAGTTGCAAGTAAAGACCGGTAGGTCCTACTTAAGGAACCTTTTTGTTCGATTTCCATTTTCAATGCTCTCCTTCTTCGAGTGACGAAAAAAATCCAATTTTCACTTCTAGTCCATTTCTATGATCTTCAATCTTTGCCCATCTGCTTGAGAAACGAAGATAATGAAGCAGAGTTATTACAGTATTATAAGTTTCTTGGAGAAATGCAAAACCATGAAGGAGTTGAAGCAAATACACAGCCTGATGGTTACAACTTCATTCATCAAGAACATAATCCCCTGCAGCAGACTGATTGATTTTTGCGCAAATTCCGAACTGGGTGACATCGAATACGCAAGATCAGTTTTCGATGGCATTGATCAGCGCAGTGTCTACATATGGAACTCAATGATCAAAGGCTACTGCAATGGCAGTGACAAGTTTGAAGCTCTGTTTATGTATGAAGAAATGCAGCGTAAAGGCTTCTCCCCAGACCATTTCACCTTCCCTTTTGTGTTGAAAGTGTGCTCCATAATCAATCTTCTTCGATACGGGCAAGGCGTTCACAGTCGAATTGTGAAAACTGGGTTTGAATTAGATTCGTATACTTGTTCTTGTTTGCTTAATATGTATGTTTCTTGTGGAGATTTGAGTTCTGGGCTGAAGGTGTTTGAGTTTATTCCCAAGTGGAATGTGGTCGCTTGGACTTCATTAATTGCAGGGTTTGTGAATAATGATCAGGCTAGTGAAGCTTTGAGATTGTTCCAAGATATGGAGAATGAAGGTGTGGAGCCTAATGAAATCACCATGGCCACTGCCTTGGCTGCAGCCGCTCGTTGCAGGGATATCGACGCTGGAAAA

mRNA sequence

GATGAATTTAGGGTAAATTTTCAAAAAAAAATTGTGTACTCCGAAGAGTGGATCCCAACGGTCATTCTCATTGGTCATTTCCTGGATCCCTTCGGCCGAGAGGCAAAGCATCAGAGTAAAATGCAGACCACAGCCATAGCTCCTTCTTCAAATCCCTCCATTTTCTTCAACCCACTTCTCAATTTCACCATTTCAAACCCCTTAATTCCATCCAACTCGCCATTTCTCTCGACCCTTGTTGCAGTTTCCGATGGATTTCGGGCTCAAACATCGATCGTTTGCGCCAGGAAGAAGAGGAGGAGACCCGTGTTTCTGAGATCGACCAAATTAGTGCTTGAATTGGCGTCTCTCTTTGCCTCCAATCTTAAGATCTTACCGCCGCCTCTGGATTTGGTCGTTGCGGAATTGAGCGGCGGAAATGGTAATGGAGGTGGTTCGCGGTTGTGGAGGAGTTTTGGTGGAGGCGGCTATGATGGATGGAGAGGTAAGAGGAAGAAAACCCCATTGTTGATTGGGTTTTTGATTCTTTGTGGTCTTGCTTTGTGCGTTTTCACTGATTTTGAGCTCGATGCGATTTGTGGAGCTCTTGGATTTGCTCTGTTTAGCGTTGCATTGATTCAATTGTGGCAGAGAAGTGGGATTTCGAAACATTTCGTTTGGGGATTTGGCCTTTTCGGCATTTTGATTGCCTTGGGATTGAGAAGATCTGAGGTGCAAAAATGGGCTGGAAAATTAGGGTTTTACCGTCCAAAGATCAAGAGTTTGAGAAGAAAAATTGAAGAAACGAAGATAATGAAGCAGAGTTATTACAGTATTATAAGTTTCTTGGAGAAATGCAAAACCATGAAGGAGTTGAAGCAAATACACAGCCTGATGGTTACAACTTCATTCATCAAGAACATAATCCCCTGCAGCAGACTGATTGATTTTTGCGCAAATTCCGAACTGGGTGACATCGAATACGCAAGATCAGTTTTCGATGGCATTGATCAGCGCAGTGTCTACATATGGAACTCAATGATCAAAGGCTACTGCAATGGCAGTGACAAGTTTGAAGCTCTGTTTATGTATGAAGAAATGCAGCGTAAAGGCTTCTCCCCAGACCATTTCACCTTCCCTTTTGTGTTGAAAGTGTGCTCCATAATCAATCTTCTTCGATACGGGCAAGGCGTTCACAGTCGAATTGTGAAAACTGGGTTTGAATTAGATTCGTATACTTGTTCTTGTTTGCTTAATATGTATGTTTCTTGTGGAGATTTGAGTTCTGGGCTGAAGGTGTTTGAGTTTATTCCCAAGTGGAATGTGGTCGCTTGGACTTCATTAATTGCAGGGTTTGTGAATAATGATCAGGCTAGTGAAGCTTTGAGATTGTTCCAAGATATGGAGAATGAAGGTGTGGAGCCTAATGAAATCACCATGGCCACTGCCTTGGCTGCAGCCGCTCGTTGCAGGGATATCGACGCTGGAAAA

Coding sequence (CDS)

GATGAATTTAGGGTAAATTTTCAAAAAAAAATTGTGTACTCCGAAGAGTGGATCCCAACGGTCATTCTCATTGGTCATTTCCTGGATCCCTTCGGCCGAGAGGCAAAGCATCAGAGTAAAATGCAGACCACAGCCATAGCTCCTTCTTCAAATCCCTCCATTTTCTTCAACCCACTTCTCAATTTCACCATTTCAAACCCCTTAATTCCATCCAACTCGCCATTTCTCTCGACCCTTGTTGCAGTTTCCGATGGATTTCGGGCTCAAACATCGATCGTTTGCGCCAGGAAGAAGAGGAGGAGACCCGTGTTTCTGAGATCGACCAAATTAGTGCTTGAATTGGCGTCTCTCTTTGCCTCCAATCTTAAGATCTTACCGCCGCCTCTGGATTTGGTCGTTGCGGAATTGAGCGGCGGAAATGGTAATGGAGGTGGTTCGCGGTTGTGGAGGAGTTTTGGTGGAGGCGGCTATGATGGATGGAGAGGTAAGAGGAAGAAAACCCCATTGTTGATTGGGTTTTTGATTCTTTGTGGTCTTGCTTTGTGCGTTTTCACTGATTTTGAGCTCGATGCGATTTGTGGAGCTCTTGGATTTGCTCTGTTTAGCGTTGCATTGATTCAATTGTGGCAGAGAAGTGGGATTTCGAAACATTTCGTTTGGGGATTTGGCCTTTTCGGCATTTTGATTGCCTTGGGATTGAGAAGATCTGAGGTGCAAAAATGGGCTGGAAAATTAGGGTTTTACCGTCCAAAGATCAAGAGTTTGAGAAGAAAAATTGAAGAAACGAAGATAATGAAGCAGAGTTATTACAGTATTATAAGTTTCTTGGAGAAATGCAAAACCATGAAGGAGTTGAAGCAAATACACAGCCTGATGGTTACAACTTCATTCATCAAGAACATAATCCCCTGCAGCAGACTGATTGATTTTTGCGCAAATTCCGAACTGGGTGACATCGAATACGCAAGATCAGTTTTCGATGGCATTGATCAGCGCAGTGTCTACATATGGAACTCAATGATCAAAGGCTACTGCAATGGCAGTGACAAGTTTGAAGCTCTGTTTATGTATGAAGAAATGCAGCGTAAAGGCTTCTCCCCAGACCATTTCACCTTCCCTTTTGTGTTGAAAGTGTGCTCCATAATCAATCTTCTTCGATACGGGCAAGGCGTTCACAGTCGAATTGTGAAAACTGGGTTTGAATTAGATTCGTATACTTGTTCTTGTTTGCTTAATATGTATGTTTCTTGTGGAGATTTGAGTTCTGGGCTGAAGGTGTTTGAGTTTATTCCCAAGTGGAATGTGGTCGCTTGGACTTCATTAATTGCAGGGTTTGTGAATAATGATCAGGCTAGTGAAGCTTTGAGATTGTTCCAAGATATGGAGAATGAAGGTGTGGAGCCTAATGAAATCACCATGGCCACTGCCTTGGCTGCAGCCGCTCGTTGCAGGGATATCGACGCTGGAAAA

Protein sequence

DEFRVNFQKKIVYSEEWIPTVILIGHFLDPFGREAKHQSKMQTTAIAPSSNPSIFFNPLLNFTISNPLIPSNSPFLSTLVAVSDGFRAQTSIVCARKKRRRPVFLRSTKLVLELASLFASNLKILPPPLDLVVAELSGGNGNGGGSRLWRSFGGGGYDGWRGKRKKTPLLIGFLILCGLALCVFTDFELDAICGALGFALFSVALIQLWQRSGISKHFVWGFGLFGILIALGLRRSEVQKWAGKLGFYRPKIKSLRRKIEETKIMKQSYYSIISFLEKCKTMKELKQIHSLMVTTSFIKNIIPCSRLIDFCANSELGDIEYARSVFDGIDQRSVYIWNSMIKGYCNGSDKFEALFMYEEMQRKGFSPDHFTFPFVLKVCSIINLLRYGQGVHSRIVKTGFELDSYTCSCLLNMYVSCGDLSSGLKVFEFIPKWNVVAWTSLIAGFVNNDQASEALRLFQDMENEGVEPNEITMATALAAAARCRDIDAGK

Homology

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BLAST of Cp4.1LG11g09480 vs. Swiss-Prot
Match: PP214_ARATH (Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis thaliana GN=PCMP-E82 PE=3 SV=2)

HSP 1 Score: 261.2 bits (666), Expect = 2.3e-68
Identity = 122/228 (53.51%), Postives = 169/228 (74.12%), Query Frame = 1


Query: 264 IMKQSYYSIISFLEKCKTMKELKQIHSLMVTTSFIKNIIPCSRLIDFCANS-ELGDIEYA 323
           +MK+ Y  I+S LE C+++ EL Q+H LM+ +S I+N+IP SRLIDFC    E  ++ YA
Sbjct: 1   MMKKHYKPILSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYA 60

Query: 324 RSVFDGIDQRSVYIWNSMIKGYCNGSDKFEALFMYEEMQRKGFSPDHFTFPFVLKVCSII 383
           RSVF+ ID  SVYIWNSMI+GY N  +  +AL  Y+EM RKG+SPD+FTFP+VLK CS +
Sbjct: 61  RSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGL 120

Query: 384 NLLRYGQGVHSRIVKTGFELDSYTCSCLLNMYVSCGDLSSGLKVFEFIPKWNVVAWTSLI 443
             +++G  VH  +VKTGFE++ Y  +CLL+MY+ CG+++ GL+VFE IP+WNVVAW SLI
Sbjct: 121 RDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLI 180

Query: 444 AGFVNNDQASEALRLFQDMENEGVEPNEITMATALAAAARCRDIDAGK 491
           +GFVNN++ S+A+  F++M++ GV+ NE  M   L A  RC+DI  GK
Sbjct: 181 SGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGK 228

[Close]

BLAST of Cp4.1LG11g09480 vs. Swiss-Prot
Match: PP175_ARATH (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 2.1e-37
Identity = 77/219 (35.16%), Postives = 129/219 (58.90%), Query Frame = 1


Query: 273 ISFLEKCKTMKELKQIHSLMVTTSFIKNIIPCSRLIDFCANSELGDIEYARSVFDGIDQR 332
           IS +E+C ++++LKQ H  M+ T    +    S+L    A S    +EYAR VFD I + 
Sbjct: 34  ISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKP 93

Query: 333 SVYIWNSMIKGYCNGSDKFEALFMYEEMQRKGFS-PDHFTFPFVLKVCSIINLLRYGQGV 392
           + + WN++I+ Y +G D   +++ + +M  +    P+ +TFPF++K  + ++ L  GQ +
Sbjct: 94  NSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSL 153

Query: 393 HSRIVKTGFELDSYTCSCLLNMYVSCGDLSSGLKVFEFIPKWNVVAWTSLIAGFVNNDQA 452
           H   VK+    D +  + L++ Y SCGDL S  KVF  I + +VV+W S+I GFV     
Sbjct: 154 HGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSP 213

Query: 453 SEALRLFQDMENEGVEPNEITMATALAAAARCRDIDAGK 491
            +AL LF+ ME+E V+ + +TM   L+A A+ R+++ G+
Sbjct: 214 DKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGR 252

[Close]

BLAST of Cp4.1LG11g09480 vs. Swiss-Prot
Match: PP169_ARATH (Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.4e-36
Identity = 75/222 (33.78%), Postives = 132/222 (59.46%), Query Frame = 1


Query: 272 IISFLEKCKTMKELKQIHSLMVTTSFIKNIIPCSRLIDFCANSELGDIEYARSVFDGIDQ 331
           ++S LEKCK +  LKQI + M+    I +    SRLI FCA SE   ++Y+  +  GI+ 
Sbjct: 56  LLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIEN 115

Query: 332 RSVYIWNSMIKGYCNGSDKFEALFMYEEMQRKGFS---PDHFTFPFVLKVCSIINLLRYG 391
            +++ WN  I+G+    +  E+  +Y++M R G     PDHFT+P + KVC+ + L   G
Sbjct: 116 PNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLG 175

Query: 392 QGVHSRIVKTGFELDSYTCSCLLNMYVSCGDLSSGLKVFEFIPKWNVVAWTSLIAGFVNN 451
             +   ++K   EL S+  +  ++M+ SCGD+ +  KVF+  P  ++V+W  LI G+   
Sbjct: 176 HMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKI 235

Query: 452 DQASEALRLFQDMENEGVEPNEITMATALAAAARCRDIDAGK 491
            +A +A+ +++ ME+EGV+P+++TM   +++ +   D++ GK
Sbjct: 236 GEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGK 277

[Close]

BLAST of Cp4.1LG11g09480 vs. Swiss-Prot
Match: PP181_ARATH (Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 5.8e-35
Identity = 81/228 (35.53%), Postives = 124/228 (54.39%), Query Frame = 1


Query: 265 MKQSYYSIISFLEKCKT---MKELKQIHSLMVTTSFIKNIIPCSRLIDFCANSELGDIEY 324
           +K S Y+I+  L  C     ++E KQ+HS ++   F +++   + L+D  A +  G +  
Sbjct: 318 IKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKA--GCLAD 377

Query: 325 ARSVFDGIDQRSVYIWNSMIKGYCNGSDKFEALFMYEEMQRKGFSPDHFTFPFVLKVCSI 384
           AR  FD + +R V +W S+I GY   SD  EAL +Y  M+  G  P+  T   VLK CS 
Sbjct: 378 ARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSS 437

Query: 385 INLLRYGQGVHSRIVKTGFELDSYTCSCLLNMYVSCGDLSSGLKVFEFIPKWNVVAWTSL 444
           +  L  G+ VH   +K GF L+    S L  MY  CG L  G  VF   P  +VV+W ++
Sbjct: 438 LATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAM 497

Query: 445 IAGFVNNDQASEALRLFQDMENEGVEPNEITMATALAAAARCRDIDAG 490
           I+G  +N Q  EAL LF++M  EG+EP+++T    ++A +    ++ G
Sbjct: 498 ISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERG 543

[Close]

BLAST of Cp4.1LG11g09480 vs. Swiss-Prot
Match: PP145_ARATH (Pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2)

HSP 1 Score: 146.4 bits (368), Expect = 8.4e-34
Identity = 74/232 (31.90%), Postives = 135/232 (58.19%), Query Frame = 1


Query: 260 EETKIMKQSYYSIISFLEKCKTMKELKQIHSLMVTTSFIKNIIPCSRLIDFCANSEL-GD 319
           + +KI   +  + I  + KC +++EL QI +  +  S I+++   ++LI+FC  S     
Sbjct: 20  KHSKIDTVNTQNPILLISKCNSLRELMQIQAYAIK-SHIEDVSFVAKLINFCTESPTESS 79

Query: 320 IEYARSVFDGIDQRSVYIWNSMIKGYCNGSDKFEALFMYEEMQRKGFSPDHFTFPFVLKV 379
           + YAR +F+ + +  + I+NSM +GY   ++  E   ++ E+   G  PD++TFP +LK 
Sbjct: 80  MSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKA 139

Query: 380 CSIINLLRYGQGVHSRIVKTGFELDSYTCSCLLNMYVSCGDLSSGLKVFEFIPKWNVVAW 439
           C++   L  G+ +H   +K G + + Y C  L+NMY  C D+ S   VF+ I +  VV +
Sbjct: 140 CAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCY 199

Query: 440 TSLIAGFVNNDQASEALRLFQDMENEGVEPNEITMATALAAAARCRDIDAGK 491
            ++I G+   ++ +EAL LF++M+ + ++PNEIT+ + L++ A    +D GK
Sbjct: 200 NAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGK 250

[Close]

BLAST of Cp4.1LG11g09480 vs. TrEMBL
Match: A0A0A0LIL6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G021600 PE=4 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 6.3e-113
Identity = 199/226 (88.05%), Postives = 212/226 (93.81%), Query Frame = 1


Query: 265 MKQSYYSIISFLEKCKTMKELKQIHSLMVTTSFIKNIIPCSRLIDFCANSELGDIEYARS 324
           M Q+YY+++SFLEKCKTMKELKQIHSLM+TTS +KNIIPCSRLIDFCANSELGDIEYAR+
Sbjct: 1   MNQNYYTVMSFLEKCKTMKELKQIHSLMITTSVVKNIIPCSRLIDFCANSELGDIEYART 60

Query: 325 VFDGIDQRSVYIWNSMIKGYCNGSDKFEALFMYEEMQRKGFSPDHFTFPFVLKVCSIINL 384
           VFD I+QR+VYIWNSMIKGYCNG DKF ALFMYEEMQRKGFSPDHFTFPFVLKVCSII+L
Sbjct: 61  VFDQINQRTVYIWNSMIKGYCNGGDKFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDL 120

Query: 385 LRYGQGVHSRIVKTGFELDSYTCSCLLNMYVSCGDLSSGLKVFEFIPKWNVVAWTSLIAG 444
           L YGQ VH+RIVKTGFELD YT SCLLNMYVSCGDL+SGLKVFEFIPKWNVVAWTSLIAG
Sbjct: 121 LVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAG 180

Query: 445 FVNNDQASEALRLFQDMENEGVEPNEITMATALAAAARCRDIDAGK 491
           FVNNDQ  EALRLF+DMENEGVEPNEITM TALAAAARCRDI  GK
Sbjct: 181 FVNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGK 226

[Close]

BLAST of Cp4.1LG11g09480 vs. TrEMBL
Match: Q84KA5_CUCME (Selenium binding protein-like protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 1.3e-110
Identity = 196/226 (86.73%), Postives = 207/226 (91.59%), Query Frame = 1


Query: 265 MKQSYYSIISFLEKCKTMKELKQIHSLMVTTSFIKNIIPCSRLIDFCANSELGDIEYARS 324
           M QSYY+I+SFLEKCKTMKELKQIHSLM+ TS +KNIIPCSRLIDFCANSELGDIEYAR+
Sbjct: 1   MNQSYYTILSFLEKCKTMKELKQIHSLMIKTSVVKNIIPCSRLIDFCANSELGDIEYART 60

Query: 325 VFDGIDQRSVYIWNSMIKGYCNGSDKFEALFMYEEMQRKGFSPDHFTFPFVLKVCSIINL 384
           VFD  DQ +VY+WNSMIKGYCNG DKF ALFMYEEMQRKGF PDHFTFPFVLKVCS I+L
Sbjct: 61  VFDQTDQLTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKGFYPDHFTFPFVLKVCSAIDL 120

Query: 385 LRYGQGVHSRIVKTGFELDSYTCSCLLNMYVSCGDLSSGLKVFEFIPKWNVVAWTSLIAG 444
           L YGQ VH+RIVKTGFELD YT SCLLNMYVSCGDL+SGLKVFEFIPKWNVVAWTSLIAG
Sbjct: 121 LVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAG 180

Query: 445 FVNNDQASEALRLFQDMENEGVEPNEITMATALAAAARCRDIDAGK 491
           FVNNDQ  EALRLF+DMENEGVEPNEITM TALAAAARCRDI  GK
Sbjct: 181 FVNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGK 226

[Close]

BLAST of Cp4.1LG11g09480 vs. TrEMBL
Match: Q84KA4_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 5.2e-91
Identity = 173/224 (77.23%), Postives = 193/224 (86.16%), Query Frame = 1


Query: 41  MQTTAIAPSSNPSIFFNPLLNFTISNPLIPSNSPFLSTLVAVSDGFRAQTSIVCARKKRR 100
           M TTAIA SS+ SIFFNPLLNFT+SNP+ P  SPF+STLVAVSDG + QT  +CARKK+R
Sbjct: 1   MHTTAIASSSSCSIFFNPLLNFTLSNPITPPKSPFISTLVAVSDGLQPQTLTICARKKKR 60

Query: 101 RPVFLRSTKLVLELASLFASNLKILPPPLDLVVAELSGGNGNGGGSRLWRSFGGGGYDGW 160
            P F RSTKLVLELASL ASN+KILPPPLDLVVAELSGG+GNGGGSRLWR FG G YDGW
Sbjct: 61  SPGFQRSTKLVLELASLLASNIKILPPPLDLVVAELSGGDGNGGGSRLWRGFGEGDYDGW 120

Query: 161 RGKRKKTPLLIGFLILCGLALCVFTDFELDAICGALGFALFSVALIQLWQRSGISKHFVW 220
           RGKRKKTPL IGFL++CGL L   TDFE++ +CG LGFA+FSVALIQLWQ+ GISKHFV 
Sbjct: 121 RGKRKKTPLFIGFLMVCGLVLLFVTDFEINEVCGILGFAVFSVALIQLWQKIGISKHFVL 180

Query: 221 GFGLFGILIALGLRRSEVQKWAGKLGFYRPKIKSLRRKIEETKI 265
           GFGLFGILIALGLRRSEVQKW  KLGFY PK+KSLRRK++  +I
Sbjct: 181 GFGLFGILIALGLRRSEVQKWVRKLGFYSPKMKSLRRKLKGRRI 224

[Close]

BLAST of Cp4.1LG11g09480 vs. TrEMBL
Match: A0A0A0LFR0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G021610 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 2.4e-88
Identity = 170/224 (75.89%), Postives = 188/224 (83.93%), Query Frame = 1


Query: 41  MQTTAIAPSSNPSIFFNPLLNFTISNPLIPSNSPFLSTLVAVSDGFRAQTSIVCARKKRR 100
           MQTT IA SS  SIFFNPLLNFT+SNP+ P  S F+ST+VAVSDG + QT  +CARKK+R
Sbjct: 1   MQTTTIASSSTCSIFFNPLLNFTLSNPITPPKSLFISTIVAVSDGLQPQTLTICARKKKR 60

Query: 101 RPVFLRSTKLVLELASLFASNLKILPPPLDLVVAELSGGNGNGGGSRLWRSFGGGGYDGW 160
            P F RSTKLV ELASL ASNLKILPPPLDLVVAELSGG+GNGGGSRLWR FGGG YDGW
Sbjct: 61  SPGFQRSTKLVFELASLLASNLKILPPPLDLVVAELSGGDGNGGGSRLWRGFGGGDYDGW 120

Query: 161 RGKRKKTPLLIGFLILCGLALCVFTDFELDAICGALGFALFSVALIQLWQRSGISKHFVW 220
           RGKRKKTPLLIGFLI+CGL L   TDFE++ +CG LGFA+F VALIQLWQ+ GISK FV 
Sbjct: 121 RGKRKKTPLLIGFLIVCGLVLLFVTDFEINVVCGVLGFAVFGVALIQLWQKIGISKDFVL 180

Query: 221 GFGLFGILIALGLRRSEVQKWAGKLGFYRPKIKSLRRKIEETKI 265
           GFGLFGILIALGLRRSEVQ+W GKLG Y  K KSLRRK++  +I
Sbjct: 181 GFGLFGILIALGLRRSEVQRWVGKLGIYSSKRKSLRRKLKGRRI 224

[Close]

BLAST of Cp4.1LG11g09480 vs. TrEMBL
Match: M5WKD0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026555mg PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 1.7e-78
Identity = 140/226 (61.95%), Postives = 177/226 (78.32%), Query Frame = 1


Query: 265 MKQSYYSIISFLEKCKTMKELKQIHSLMVTTSFIKNIIPCSRLIDFCANSELGDIEYARS 324
           MK+ Y +I+S LE CK+M ELKQ+H LM+TTS   N+IP SRL+DFCANSE  D+ YA+S
Sbjct: 1   MKKHYNTILSLLETCKSMSELKQLHGLMITTSVFNNVIPLSRLVDFCANSEARDLVYAKS 60

Query: 325 VFDGIDQRSVYIWNSMIKGYCNGSDKFEALFMYEEMQRKGFSPDHFTFPFVLKVCSIINL 384
           VF  I+Q  VYIWNSMI+GY N  +  E+L MY EM ++G+ PD+FTFPFVLK CS+I +
Sbjct: 61  VFHQINQPRVYIWNSMIRGYSNSENPAESLIMYREMLQRGYVPDNFTFPFVLKACSLITV 120

Query: 385 LRYGQGVHSRIVKTGFELDSYTCSCLLNMYVSCGDLSSGLKVFEFIPKWNVVAWTSLIAG 444
             YG+ VH+ IVKTGFELD Y  +CLL+MY SC D++SGLKVF+ IPKWNVVAWTSLI+G
Sbjct: 121 YHYGRCVHNCIVKTGFELDMYASTCLLSMYASCADMNSGLKVFDNIPKWNVVAWTSLISG 180

Query: 445 FVNNDQASEALRLFQDMENEGVEPNEITMATALAAAARCRDIDAGK 491
           FV N+QA+EA+++F+DME + V+PNE TM   + A AR RDID GK
Sbjct: 181 FVGNNQATEAIKVFKDMELQNVQPNEFTMVHVVVACARSRDIDTGK 226

[Close]

BLAST of Cp4.1LG11g09480 vs. TAIR10
Match: AT3G05240.1 (AT3G05240.1 mitochondrial editing factor 19)

HSP 1 Score: 261.2 bits (666), Expect = 1.3e-69
Identity = 122/228 (53.51%), Postives = 169/228 (74.12%), Query Frame = 1


Query: 264 IMKQSYYSIISFLEKCKTMKELKQIHSLMVTTSFIKNIIPCSRLIDFCANS-ELGDIEYA 323
           +MK+ Y  I+S LE C+++ EL Q+H LM+ +S I+N+IP SRLIDFC    E  ++ YA
Sbjct: 1   MMKKHYKPILSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYA 60

Query: 324 RSVFDGIDQRSVYIWNSMIKGYCNGSDKFEALFMYEEMQRKGFSPDHFTFPFVLKVCSII 383
           RSVF+ ID  SVYIWNSMI+GY N  +  +AL  Y+EM RKG+SPD+FTFP+VLK CS +
Sbjct: 61  RSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGL 120

Query: 384 NLLRYGQGVHSRIVKTGFELDSYTCSCLLNMYVSCGDLSSGLKVFEFIPKWNVVAWTSLI 443
             +++G  VH  +VKTGFE++ Y  +CLL+MY+ CG+++ GL+VFE IP+WNVVAW SLI
Sbjct: 121 RDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLI 180

Query: 444 AGFVNNDQASEALRLFQDMENEGVEPNEITMATALAAAARCRDIDAGK 491
           +GFVNN++ S+A+  F++M++ GV+ NE  M   L A  RC+DI  GK
Sbjct: 181 SGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGK 228

[Close]

BLAST of Cp4.1LG11g09480 vs. TAIR10
Match: AT2G29760.1 (AT2G29760.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 158.3 bits (399), Expect = 1.2e-38
Identity = 77/219 (35.16%), Postives = 129/219 (58.90%), Query Frame = 1


Query: 273 ISFLEKCKTMKELKQIHSLMVTTSFIKNIIPCSRLIDFCANSELGDIEYARSVFDGIDQR 332
           IS +E+C ++++LKQ H  M+ T    +    S+L    A S    +EYAR VFD I + 
Sbjct: 34  ISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKP 93

Query: 333 SVYIWNSMIKGYCNGSDKFEALFMYEEMQRKGFS-PDHFTFPFVLKVCSIINLLRYGQGV 392
           + + WN++I+ Y +G D   +++ + +M  +    P+ +TFPF++K  + ++ L  GQ +
Sbjct: 94  NSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSL 153

Query: 393 HSRIVKTGFELDSYTCSCLLNMYVSCGDLSSGLKVFEFIPKWNVVAWTSLIAGFVNNDQA 452
           H   VK+    D +  + L++ Y SCGDL S  KVF  I + +VV+W S+I GFV     
Sbjct: 154 HGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSP 213

Query: 453 SEALRLFQDMENEGVEPNEITMATALAAAARCRDIDAGK 491
            +AL LF+ ME+E V+ + +TM   L+A A+ R+++ G+
Sbjct: 214 DKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGR 252

[Close]

BLAST of Cp4.1LG11g09480 vs. TAIR10
Match: AT2G22410.1 (AT2G22410.1 SLOW GROWTH 1)

HSP 1 Score: 154.8 bits (390), Expect = 1.3e-37
Identity = 75/222 (33.78%), Postives = 132/222 (59.46%), Query Frame = 1


Query: 272 IISFLEKCKTMKELKQIHSLMVTTSFIKNIIPCSRLIDFCANSELGDIEYARSVFDGIDQ 331
           ++S LEKCK +  LKQI + M+    I +    SRLI FCA SE   ++Y+  +  GI+ 
Sbjct: 56  LLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIEN 115

Query: 332 RSVYIWNSMIKGYCNGSDKFEALFMYEEMQRKGFS---PDHFTFPFVLKVCSIINLLRYG 391
            +++ WN  I+G+    +  E+  +Y++M R G     PDHFT+P + KVC+ + L   G
Sbjct: 116 PNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLG 175

Query: 392 QGVHSRIVKTGFELDSYTCSCLLNMYVSCGDLSSGLKVFEFIPKWNVVAWTSLIAGFVNN 451
             +   ++K   EL S+  +  ++M+ SCGD+ +  KVF+  P  ++V+W  LI G+   
Sbjct: 176 HMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKI 235

Query: 452 DQASEALRLFQDMENEGVEPNEITMATALAAAARCRDIDAGK 491
            +A +A+ +++ ME+EGV+P+++TM   +++ +   D++ GK
Sbjct: 236 GEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGK 277

[Close]

BLAST of Cp4.1LG11g09480 vs. TAIR10
Match: AT2G33680.1 (AT2G33680.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 150.2 bits (378), Expect = 3.3e-36
Identity = 81/228 (35.53%), Postives = 124/228 (54.39%), Query Frame = 1


Query: 265 MKQSYYSIISFLEKCKT---MKELKQIHSLMVTTSFIKNIIPCSRLIDFCANSELGDIEY 324
           +K S Y+I+  L  C     ++E KQ+HS ++   F +++   + L+D  A +  G +  
Sbjct: 318 IKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKA--GCLAD 377

Query: 325 ARSVFDGIDQRSVYIWNSMIKGYCNGSDKFEALFMYEEMQRKGFSPDHFTFPFVLKVCSI 384
           AR  FD + +R V +W S+I GY   SD  EAL +Y  M+  G  P+  T   VLK CS 
Sbjct: 378 ARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSS 437

Query: 385 INLLRYGQGVHSRIVKTGFELDSYTCSCLLNMYVSCGDLSSGLKVFEFIPKWNVVAWTSL 444
           +  L  G+ VH   +K GF L+    S L  MY  CG L  G  VF   P  +VV+W ++
Sbjct: 438 LATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAM 497

Query: 445 IAGFVNNDQASEALRLFQDMENEGVEPNEITMATALAAAARCRDIDAG 490
           I+G  +N Q  EAL LF++M  EG+EP+++T    ++A +    ++ G
Sbjct: 498 ISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERG 543

[Close]

BLAST of Cp4.1LG11g09480 vs. TAIR10
Match: AT2G02980.1 (AT2G02980.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 146.4 bits (368), Expect = 4.7e-35
Identity = 74/232 (31.90%), Postives = 135/232 (58.19%), Query Frame = 1


Query: 260 EETKIMKQSYYSIISFLEKCKTMKELKQIHSLMVTTSFIKNIIPCSRLIDFCANSEL-GD 319
           + +KI   +  + I  + KC +++EL QI +  +  S I+++   ++LI+FC  S     
Sbjct: 20  KHSKIDTVNTQNPILLISKCNSLRELMQIQAYAIK-SHIEDVSFVAKLINFCTESPTESS 79

Query: 320 IEYARSVFDGIDQRSVYIWNSMIKGYCNGSDKFEALFMYEEMQRKGFSPDHFTFPFVLKV 379
           + YAR +F+ + +  + I+NSM +GY   ++  E   ++ E+   G  PD++TFP +LK 
Sbjct: 80  MSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKA 139

Query: 380 CSIINLLRYGQGVHSRIVKTGFELDSYTCSCLLNMYVSCGDLSSGLKVFEFIPKWNVVAW 439
           C++   L  G+ +H   +K G + + Y C  L+NMY  C D+ S   VF+ I +  VV +
Sbjct: 140 CAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCY 199

Query: 440 TSLIAGFVNNDQASEALRLFQDMENEGVEPNEITMATALAAAARCRDIDAGK 491
            ++I G+   ++ +EAL LF++M+ + ++PNEIT+ + L++ A    +D GK
Sbjct: 200 NAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGK 250

[Close]

BLAST of Cp4.1LG11g09480 vs. NCBI nr
Match: gi|449443185|ref|XP_004139361.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g05240 [Cucumis sativus])

HSP 1 Score: 416.0 bits (1068), Expect = 9.1e-113
Identity = 199/226 (88.05%), Postives = 212/226 (93.81%), Query Frame = 1


Query: 265 MKQSYYSIISFLEKCKTMKELKQIHSLMVTTSFIKNIIPCSRLIDFCANSELGDIEYARS 324
           M Q+YY+++SFLEKCKTMKELKQIHSLM+TTS +KNIIPCSRLIDFCANSELGDIEYAR+
Sbjct: 1   MNQNYYTVMSFLEKCKTMKELKQIHSLMITTSVVKNIIPCSRLIDFCANSELGDIEYART 60

Query: 325 VFDGIDQRSVYIWNSMIKGYCNGSDKFEALFMYEEMQRKGFSPDHFTFPFVLKVCSIINL 384
           VFD I+QR+VYIWNSMIKGYCNG DKF ALFMYEEMQRKGFSPDHFTFPFVLKVCSII+L
Sbjct: 61  VFDQINQRTVYIWNSMIKGYCNGGDKFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDL 120

Query: 385 LRYGQGVHSRIVKTGFELDSYTCSCLLNMYVSCGDLSSGLKVFEFIPKWNVVAWTSLIAG 444
           L YGQ VH+RIVKTGFELD YT SCLLNMYVSCGDL+SGLKVFEFIPKWNVVAWTSLIAG
Sbjct: 121 LVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAG 180

Query: 445 FVNNDQASEALRLFQDMENEGVEPNEITMATALAAAARCRDIDAGK 491
           FVNNDQ  EALRLF+DMENEGVEPNEITM TALAAAARCRDI  GK
Sbjct: 181 FVNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGK 226

[Close]

BLAST of Cp4.1LG11g09480 vs. NCBI nr
Match: gi|659070392|ref|XP_008454853.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g05240 [Cucumis melo])

HSP 1 Score: 408.3 bits (1048), Expect = 1.9e-110
Identity = 196/226 (86.73%), Postives = 207/226 (91.59%), Query Frame = 1


Query: 265 MKQSYYSIISFLEKCKTMKELKQIHSLMVTTSFIKNIIPCSRLIDFCANSELGDIEYARS 324
           M QSYY+I+SFLEKCKTMKELKQIHSLM+ TS +KNIIPCSRLIDFCANSELGDIEYAR+
Sbjct: 1   MNQSYYTILSFLEKCKTMKELKQIHSLMIKTSVVKNIIPCSRLIDFCANSELGDIEYART 60

Query: 325 VFDGIDQRSVYIWNSMIKGYCNGSDKFEALFMYEEMQRKGFSPDHFTFPFVLKVCSIINL 384
           VFD  DQ +VY+WNSMIKGYCNG DKF ALFMYEEMQRKGF PDHFTFPFVLKVCS I+L
Sbjct: 61  VFDQTDQLTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKGFYPDHFTFPFVLKVCSAIDL 120

Query: 385 LRYGQGVHSRIVKTGFELDSYTCSCLLNMYVSCGDLSSGLKVFEFIPKWNVVAWTSLIAG 444
           L YGQ VH+RIVKTGFELD YT SCLLNMYVSCGDL+SGLKVFEFIPKWNVVAWTSLIAG
Sbjct: 121 LVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAG 180

Query: 445 FVNNDQASEALRLFQDMENEGVEPNEITMATALAAAARCRDIDAGK 491
           FVNNDQ  EALRLF+DMENEGVEPNEITM TALAAAARCRDI  GK
Sbjct: 181 FVNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGK 226

[Close]

BLAST of Cp4.1LG11g09480 vs. NCBI nr
Match: gi|659070394|ref|XP_008454859.1| (PREDICTED: uncharacterized protein LOC103495165 [Cucumis melo])

HSP 1 Score: 346.3 bits (887), Expect = 8.9e-92
Identity = 174/224 (77.68%), Postives = 194/224 (86.61%), Query Frame = 1


Query: 41  MQTTAIAPSSNPSIFFNPLLNFTISNPLIPSNSPFLSTLVAVSDGFRAQTSIVCARKKRR 100
           M TTAIA SS+ SIFFNPLLNFT+SNP+ P  SPF+STLVAVSDG + QT  +CARKK+R
Sbjct: 1   MHTTAIASSSSCSIFFNPLLNFTLSNPITPPKSPFISTLVAVSDGLQPQTLTICARKKKR 60

Query: 101 RPVFLRSTKLVLELASLFASNLKILPPPLDLVVAELSGGNGNGGGSRLWRSFGGGGYDGW 160
            P F RSTKLVLELASL ASN+KILPPPLDLVVAELSGG+GNGGGSRLWR FGGG YDGW
Sbjct: 61  SPGFQRSTKLVLELASLLASNIKILPPPLDLVVAELSGGDGNGGGSRLWRGFGGGDYDGW 120

Query: 161 RGKRKKTPLLIGFLILCGLALCVFTDFELDAICGALGFALFSVALIQLWQRSGISKHFVW 220
           RGKRKKTPL IGFL++CGL L   TDFE++ +CG LGFA+FSVALIQLWQ+ GISKHFV 
Sbjct: 121 RGKRKKTPLFIGFLMVCGLVLLFVTDFEINEVCGILGFAVFSVALIQLWQKIGISKHFVL 180

Query: 221 GFGLFGILIALGLRRSEVQKWAGKLGFYRPKIKSLRRKIEETKI 265
           GFGLFGILIALGLRRSEVQKW  KLGFY PK+KSLRRK++  +I
Sbjct: 181 GFGLFGILIALGLRRSEVQKWVRKLGFYSPKMKSLRRKLKGRRI 224

[Close]

BLAST of Cp4.1LG11g09480 vs. NCBI nr
Match: gi|28558787|gb|AAO45758.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 343.2 bits (879), Expect = 7.5e-91
Identity = 173/224 (77.23%), Postives = 193/224 (86.16%), Query Frame = 1


Query: 41  MQTTAIAPSSNPSIFFNPLLNFTISNPLIPSNSPFLSTLVAVSDGFRAQTSIVCARKKRR 100
           M TTAIA SS+ SIFFNPLLNFT+SNP+ P  SPF+STLVAVSDG + QT  +CARKK+R
Sbjct: 1   MHTTAIASSSSCSIFFNPLLNFTLSNPITPPKSPFISTLVAVSDGLQPQTLTICARKKKR 60

Query: 101 RPVFLRSTKLVLELASLFASNLKILPPPLDLVVAELSGGNGNGGGSRLWRSFGGGGYDGW 160
            P F RSTKLVLELASL ASN+KILPPPLDLVVAELSGG+GNGGGSRLWR FG G YDGW
Sbjct: 61  SPGFQRSTKLVLELASLLASNIKILPPPLDLVVAELSGGDGNGGGSRLWRGFGEGDYDGW 120

Query: 161 RGKRKKTPLLIGFLILCGLALCVFTDFELDAICGALGFALFSVALIQLWQRSGISKHFVW 220
           RGKRKKTPL IGFL++CGL L   TDFE++ +CG LGFA+FSVALIQLWQ+ GISKHFV 
Sbjct: 121 RGKRKKTPLFIGFLMVCGLVLLFVTDFEINEVCGILGFAVFSVALIQLWQKIGISKHFVL 180

Query: 221 GFGLFGILIALGLRRSEVQKWAGKLGFYRPKIKSLRRKIEETKI 265
           GFGLFGILIALGLRRSEVQKW  KLGFY PK+KSLRRK++  +I
Sbjct: 181 GFGLFGILIALGLRRSEVQKWVRKLGFYSPKMKSLRRKLKGRRI 224

[Close]

BLAST of Cp4.1LG11g09480 vs. NCBI nr
Match: gi|449443183|ref|XP_004139360.1| (PREDICTED: uncharacterized protein LOC101213268 [Cucumis sativus])

HSP 1 Score: 334.3 bits (856), Expect = 3.5e-88
Identity = 170/224 (75.89%), Postives = 188/224 (83.93%), Query Frame = 1


Query: 41  MQTTAIAPSSNPSIFFNPLLNFTISNPLIPSNSPFLSTLVAVSDGFRAQTSIVCARKKRR 100
           MQTT IA SS  SIFFNPLLNFT+SNP+ P  S F+ST+VAVSDG + QT  +CARKK+R
Sbjct: 1   MQTTTIASSSTCSIFFNPLLNFTLSNPITPPKSLFISTIVAVSDGLQPQTLTICARKKKR 60

Query: 101 RPVFLRSTKLVLELASLFASNLKILPPPLDLVVAELSGGNGNGGGSRLWRSFGGGGYDGW 160
            P F RSTKLV ELASL ASNLKILPPPLDLVVAELSGG+GNGGGSRLWR FGGG YDGW
Sbjct: 61  SPGFQRSTKLVFELASLLASNLKILPPPLDLVVAELSGGDGNGGGSRLWRGFGGGDYDGW 120

Query: 161 RGKRKKTPLLIGFLILCGLALCVFTDFELDAICGALGFALFSVALIQLWQRSGISKHFVW 220
           RGKRKKTPLLIGFLI+CGL L   TDFE++ +CG LGFA+F VALIQLWQ+ GISK FV 
Sbjct: 121 RGKRKKTPLLIGFLIVCGLVLLFVTDFEINVVCGVLGFAVFGVALIQLWQKIGISKDFVL 180

Query: 221 GFGLFGILIALGLRRSEVQKWAGKLGFYRPKIKSLRRKIEETKI 265
           GFGLFGILIALGLRRSEVQ+W GKLG Y  K KSLRRK++  +I
Sbjct: 181 GFGLFGILIALGLRRSEVQRWVGKLGIYSSKRKSLRRKLKGRRI 224

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g09480 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP214_ARATH	2.3e-68	53.51	Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis th...	[more]
PP175_ARATH	2.1e-37	35.16	Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidop...	[more]
PP169_ARATH	2.4e-36	33.78	Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidop...	[more]
PP181_ARATH	5.8e-35	35.53	Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana GN...	[more]
PP145_ARATH	8.4e-34	31.90	Pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Arabidop...	[more]

BLAST of Cp4.1LG11g09480 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIL6_CUCSA	6.3e-113	88.05	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G021600 PE=4 SV=1	[more]
Q84KA5_CUCME	1.3e-110	86.73	Selenium binding protein-like protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
Q84KA4_CUCME	5.2e-91	77.23	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0LFR0_CUCSA	2.4e-88	75.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G021610 PE=4 SV=1	[more]
M5WKD0_PRUPE	1.7e-78	61.95	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026555mg PE=4 SV=1	[more]

BLAST of Cp4.1LG11g09480 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05240.1	1.3e-69	53.51	mitochondrial editing factor 19	[more]
AT2G29760.1	1.2e-38	35.16	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G22410.1	1.3e-37	33.78	SLOW GROWTH 1	[more]
AT2G33680.1	3.3e-36	35.53	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G02980.1	4.7e-35	31.90	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of Cp4.1LG11g09480 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443185\|ref\|XP_004139361.1\|	9.1e-113	88.05	PREDICTED: putative pentatricopeptide repeat-containing protein At3g05240 [Cucum...	[more]
gi\|659070392\|ref\|XP_008454853.1\|	1.9e-110	86.73	PREDICTED: putative pentatricopeptide repeat-containing protein At3g05240 [Cucum...	[more]
gi\|659070394\|ref\|XP_008454859.1\|	8.9e-92	77.68	PREDICTED: uncharacterized protein LOC103495165 [Cucumis melo]	[more]
gi\|28558787\|gb\|AAO45758.1\|	7.5e-91	77.23	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|449443183\|ref\|XP_004139360.1\|	3.5e-88	75.89	PREDICTED: uncharacterized protein LOC101213268 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0080156	mitochondrial mRNA modification
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g09480.1	Cp4.1LG11g09480.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 405..432 score:
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 333..379 score: 2.7E-10coord: 434..477 score: 7.8
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 436..470 score: 1.4E-7coord: 335..368 score: 3.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 434..468 score: 12.156coord: 333..367 score: 12.189coord: 300..332 score: 5.13coord: 368..402 score: 5.448coord: 403..433 score: 7
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 255..490 score: 3.0E
None	No IPR available	PANTHER	PTHR24015:SF840	SUBFAMILY NOT NAMED	coord: 255..490 score: 3.0E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG11g09480	Cucsa.091620	Cucumber (Gy14) v1	cgycpeB0168
Cp4.1LG11g09480	CmaCh05G011490	Cucurbita maxima (Rimu)	cmacpeB767
Cp4.1LG11g09480	CmoCh05G011600	Cucurbita moschata (Rifu)	cmocpeB721
Cp4.1LG11g09480	Cla019878	Watermelon (97103) v1	cpewmB113
Cp4.1LG11g09480	Csa2G021600	Cucumber (Chinese Long) v2	cpecuB103
Cp4.1LG11g09480	MELO3C004280	Melon (DHL92) v3.5.1	cpemeB099
Cp4.1LG11g09480	ClCG02G015920	Watermelon (Charleston Gray)	cpewcgB104
Cp4.1LG11g09480	CSPI02G03790	Wild cucumber (PI 183967)	cpecpiB100
Cp4.1LG11g09480	Lsi11G005290	Bottle gourd (USVL1VR-Ls)	cpelsiB074
Cp4.1LG11g09480	MELO3C004280.2	Melon (DHL92) v3.6.1	cpemedB123
Cp4.1LG11g09480	CsaV3_2G005120	Cucumber (Chinese Long) v3	cpecucB0114
Cp4.1LG11g09480	Bhi05G001655	Wax gourd	cpewgoB0133
Cp4.1LG11g09480	CsGy2G003880	Cucumber (Gy14) v2	cgybcpeB168
Cp4.1LG11g09480	Carg12892	Silver-seed gourd	carcpeB1252

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG11g09480	Cucurbita pepo (Zucchini)	cpecpeB001
Cp4.1LG11g09480	Cucurbita pepo (Zucchini)	cpecpeB139
Cp4.1LG11g09480	Cucurbita maxima (Rimu)	cmacpeB171
Cp4.1LG11g09480	Cucurbita moschata (Rifu)	cmocpeB051
Cp4.1LG11g09480	Cucurbita moschata (Rifu)	cmocpeB147
Cp4.1LG11g09480	Bottle gourd (USVL1VR-Ls)	cpelsiB095
Cp4.1LG11g09480	Watermelon (97103) v1	cpewmB104
Cp4.1LG11g09480	Melon (DHL92) v3.5.1	cpemeB084
Cp4.1LG11g09480	Silver-seed gourd	carcpeB1005