CsaV3_2G002360 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G002360
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 952213 .. 952415 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGCCGGCGCCGGTACAGCTAAATCTACAAAATTCACTCGGTAATTTCGTCGAACACCTTCCGAGCAAAAAAAATAAAGCTGTAAAACTCCGGTCACCCGTGCCGGCGCCGGTGTACGATCACTTTATAACTATTGGGCAACCCGATATTCAAACCGGAAAATCGCTGGCAGCGTCCGAAAAATCAACTGAGTTCTGTCG

mRNA sequence

ATGCTGCCGGCGCCGGTACAGCTAAATCTACAAAATTCACTCGGTAATTTCGTCGAACACCTTCCGAGCAAAAAAAATAAAGCTGTAAAACTCCGGTCACCCGTGCCGGCGCCGGTGTACGATCACTTTATAACTATTGGGCAACCCGATATTCAAACCGGAAAATCGCTGGCAGCGTCCGAAAAATCAACTGAGTTCTGTCG

Coding sequence (CDS)

ATGCTGCCGGCGCCGGTACAGCTAAATCTACAAAATTCACTCGGTAATTTCGTCGAACACCTTCCGAGCAAAAAAAATAAAGCTGTAAAACTCCGGTCACCCGTGCCGGCGCCGGTGTACGATCACTTTATAACTATTGGGCAACCCGATATTCAAACCGGAAAATCGCTGGCAGCGTCCGAAAAATCAACTGAGTTCTGTCG

Protein sequence

MLPAPVQLNLQNSLGNFVEHLPSKKNKAVKLRSPVPAPVYDHFITIGQPDIQTGKSLAASEKSTEFCX
Homology
[Close]
BLAST of CsaV3_2G002360 vs. NCBI nr
Match: KGN60628.1 (hypothetical protein Csa_2G004770 [Cucumis sativus])

HSP 1 Score: 139.8 bits (351), Expect = 3.4e-30
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MLPAPVQLNLQNSLGNFVEHLPSKKNKAVKLRSPVPAPVYDHFITIGQPDIQTGKSLAAS 60
          MLPAPVQLNLQNSLGNFVEHLPSKKNKAVKLRSPVPAPVYDHFITIGQPDIQTGKSLAAS
Sbjct: 1  MLPAPVQLNLQNSLGNFVEHLPSKKNKAVKLRSPVPAPVYDHFITIGQPDIQTGKSLAAS 60

Query: 61 EKSTEFC 68
          EKSTEFC
Sbjct: 61 EKSTEFC 67

[Close]
BLAST of CsaV3_2G002360 vs. TrEMBL
Match: tr|A0A0A0LFW1|A0A0A0LFW1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004770 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.2e-30
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MLPAPVQLNLQNSLGNFVEHLPSKKNKAVKLRSPVPAPVYDHFITIGQPDIQTGKSLAAS 60
          MLPAPVQLNLQNSLGNFVEHLPSKKNKAVKLRSPVPAPVYDHFITIGQPDIQTGKSLAAS
Sbjct: 1  MLPAPVQLNLQNSLGNFVEHLPSKKNKAVKLRSPVPAPVYDHFITIGQPDIQTGKSLAAS 60

Query: 61 EKSTEFC 68
          EKSTEFC
Sbjct: 61 EKSTEFC 67

The following BLAST results are available for this feature:
BLAST of CsaV3_2G002360 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN60628.13.4e-30100.00hypothetical protein Csa_2G004770 [Cucumis sativus][more]
BLAST of CsaV3_2G002360 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G002360 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G002360 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LFW1|A0A0A0LFW1_CUCSA2.2e-30100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004770 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G002360.1CsaV3_2G002360.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G002360CSPI02G01260Wild cucumber (PI 183967)cpicucB080
CsaV3_2G002360CsGy2G001290Cucumber (Gy14) v2cgybcucB064
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G002360Wax gourdcucwgoB139
CsaV3_2G002360Wax gourdcucwgoB219
CsaV3_2G002360Cucumber (Chinese Long) v3cuccucB009
CsaV3_2G002360Silver-seed gourdcarcucB0045
CsaV3_2G002360Silver-seed gourdcarcucB0147
CsaV3_2G002360Silver-seed gourdcarcucB0307
CsaV3_2G002360Silver-seed gourdcarcucB0605
CsaV3_2G002360Cucurbita maxima (Rimu)cmacucB0934
CsaV3_2G002360Cucumber (Gy14) v2cgybcucB019
CsaV3_2G002360Cucumber (Gy14) v1cgycucB156
CsaV3_2G002360Cucurbita maxima (Rimu)cmacucB0081
CsaV3_2G002360Cucurbita maxima (Rimu)cmacucB0135
CsaV3_2G002360Cucurbita maxima (Rimu)cmacucB0202
CsaV3_2G002360Cucurbita moschata (Rifu)cmocucB0070
CsaV3_2G002360Cucurbita moschata (Rifu)cmocucB0120
CsaV3_2G002360Cucurbita moschata (Rifu)cmocucB0185
CsaV3_2G002360Cucurbita moschata (Rifu)cmocucB0924
CsaV3_2G002360Cucurbita pepo (Zucchini)cpecucB0114
CsaV3_2G002360Cucurbita pepo (Zucchini)cpecucB0450
CsaV3_2G002360Cucurbita pepo (Zucchini)cpecucB0826
CsaV3_2G002360Cucurbita pepo (Zucchini)cpecucB1015
CsaV3_2G002360Wild cucumber (PI 183967)cpicucB023
CsaV3_2G002360Bottle gourd (USVL1VR-Ls)cuclsiB108
CsaV3_2G002360Bottle gourd (USVL1VR-Ls)cuclsiB142
CsaV3_2G002360Melon (DHL92) v3.5.1cucmeB116
CsaV3_2G002360Melon (DHL92) v3.5.1cucmeB142
CsaV3_2G002360Melon (DHL92) v3.6.1cucmedB112
CsaV3_2G002360Melon (DHL92) v3.6.1cucmedB135
CsaV3_2G002360Watermelon (Charleston Gray)cucwcgB112
CsaV3_2G002360Watermelon (Charleston Gray)cucwcgB156
CsaV3_2G002360Watermelon (97103) v1cucwmB174
CsaV3_2G002360Watermelon (97103) v1cucwmB180
CsaV3_2G002360Watermelon (97103) v2cucwmbB108
CsaV3_2G002360Watermelon (97103) v2cucwmbB143