CSPI02G01260 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI02G01260
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr2 : 845752 .. 846108 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGCCGGCGCCGGTACAGCTAAATCTACAAAATTCACTCGGTAATTTCGTCGAACACCTTCCGAGCAAAAAAAATAAAGCTGTAAAACTCCGGTCATCCGTGCCGGCGCCGGTGTACGATCACTTTATAACTATTGGGCAACCCGATATTCAAACCGGAAAAGCGCTGGCAGCGTCCGAAAAATCAACTGAGTTCTGTCGGTAATTTCGTCGAACATCTTCAAAGCACAGGCAAAAAAAAAAAAAAGGAAAAAAAGAAACTAGTTGACTGTAGCATAGTTTAGATTCTGAAACAGGGTATGTGAAAACAAGAGATAATCGTTTTCCATGGGCCTACGGTTTTTCTGCAACTTGA

mRNA sequence

ATGCTGCCGGCGCCGGTACAGCTAAATCTACAAAATTCACTCGGTAATTTCGTCGAACACCTTCCGAGCAAAAAAAATAAAGCTGTAAAACTCCGGTCATCCGTGCCGGCGCCGGTGTACGATCACTTTATAACTATTGGGCAACCCGATATTCAAACCGGAAAAGCGCTGGCAGCGTCCGAAAAATCAACTGAGTTCTGTCGTTTAGATTCTGAAACAGGGTATGTGAAAACAAGAGATAATCGTTTTCCATGGGCCTACGGTTTTTCTGCAACTTGA

Coding sequence (CDS)

ATGCTGCCGGCGCCGGTACAGCTAAATCTACAAAATTCACTCGGTAATTTCGTCGAACACCTTCCGAGCAAAAAAAATAAAGCTGTAAAACTCCGGTCATCCGTGCCGGCGCCGGTGTACGATCACTTTATAACTATTGGGCAACCCGATATTCAAACCGGAAAAGCGCTGGCAGCGTCCGAAAAATCAACTGAGTTCTGTCGTTTAGATTCTGAAACAGGGTATGTGAAAACAAGAGATAATCGTTTTCCATGGGCCTACGGTTTTTCTGCAACTTGA
Homology
[Close]
BLAST of CSPI02G01260 vs. TrEMBL
Match: A0A0A0LFW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G004770 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 2.4e-45
Identity = 90/92 (97.83%), Postives = 91/92 (98.91%), Query Frame = 1 

Query: 1  MLPAPVQLNLQNSLGNFVEHLPSKKNKAVKLRSSVPAPVYDHFITIGQPDIQTGKALAAS 60
          MLPAPVQLNLQNSLGNFVEHLPSKKNKAVKLRS VPAPVYDHFITIGQPDIQTGK+LAAS
Sbjct: 1  MLPAPVQLNLQNSLGNFVEHLPSKKNKAVKLRSPVPAPVYDHFITIGQPDIQTGKSLAAS 60

Query: 61 EKSTEFCRLDSETGYVKTRDNRFPWAYGFSAT 93
          EKSTEFCRLDSETGYVKTRDNRFPWAYGFSAT
Sbjct: 61 EKSTEFCRLDSETGYVKTRDNRFPWAYGFSAT 92

[Close]
BLAST of CSPI02G01260 vs. NCBI nr
Match: gi|700205509|gb|KGN60628.1| (hypothetical protein Csa_2G004770 [Cucumis sativus])

HSP 1 Score: 189.1 bits (479), Expect = 3.4e-45
Identity = 90/92 (97.83%), Postives = 91/92 (98.91%), Query Frame = 1 

Query: 1  MLPAPVQLNLQNSLGNFVEHLPSKKNKAVKLRSSVPAPVYDHFITIGQPDIQTGKALAAS 60
          MLPAPVQLNLQNSLGNFVEHLPSKKNKAVKLRS VPAPVYDHFITIGQPDIQTGK+LAAS
Sbjct: 1  MLPAPVQLNLQNSLGNFVEHLPSKKNKAVKLRSPVPAPVYDHFITIGQPDIQTGKSLAAS 60

Query: 61 EKSTEFCRLDSETGYVKTRDNRFPWAYGFSAT 93
          EKSTEFCRLDSETGYVKTRDNRFPWAYGFSAT
Sbjct: 61 EKSTEFCRLDSETGYVKTRDNRFPWAYGFSAT 92

The following BLAST results are available for this feature:
BLAST of CSPI02G01260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G01260 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LFW1_CUCSA2.4e-4597.83Uncharacterized protein OS=Cucumis sativus GN=Csa_2G004770 PE=4 SV=1[more]
BLAST of CSPI02G01260 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G01260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205509|gb|KGN60628.1|3.4e-4597.83hypothetical protein Csa_2G004770 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G01260.1CSPI02G01260.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI02G01260Csa2G004770Cucumber (Chinese Long) v2cpicuB065
CSPI02G01260CsaV3_2G002360Cucumber (Chinese Long) v3cpicucB080
CSPI02G01260CsGy2G001290Cucumber (Gy14) v2cgybcpiB056
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI02G01260Cucumber (Chinese Long) v3cpicucB073
CSPI02G01260Watermelon (97103) v2cpiwmbB105
CSPI02G01260Watermelon (97103) v2cpiwmbB145
CSPI02G01260Wax gourdcpiwgoB132
CSPI02G01260Wax gourdcpiwgoB214
CSPI02G01260Wild cucumber (PI 183967)cpicpiB009
CSPI02G01260Cucumber (Gy14) v1cgycpiB152
CSPI02G01260Cucumber (Gy14) v1cgycpiB349
CSPI02G01260Cucurbita maxima (Rimu)cmacpiB073
CSPI02G01260Cucurbita maxima (Rimu)cmacpiB116
CSPI02G01260Cucurbita maxima (Rimu)cmacpiB174
CSPI02G01260Cucurbita maxima (Rimu)cmacpiB800
CSPI02G01260Cucurbita moschata (Rifu)cmocpiB066
CSPI02G01260Cucurbita moschata (Rifu)cmocpiB108
CSPI02G01260Cucurbita moschata (Rifu)cmocpiB159
CSPI02G01260Cucurbita moschata (Rifu)cmocpiB787
CSPI02G01260Melon (DHL92) v3.5.1cpimeB110
CSPI02G01260Melon (DHL92) v3.5.1cpimeB140
CSPI02G01260Watermelon (Charleston Gray)cpiwcgB102
CSPI02G01260Watermelon (Charleston Gray)cpiwcgB151
CSPI02G01260Watermelon (97103) v1cpiwmB165
CSPI02G01260Watermelon (97103) v1cpiwmB171
CSPI02G01260Cucurbita pepo (Zucchini)cpecpiB100
CSPI02G01260Cucurbita pepo (Zucchini)cpecpiB370
CSPI02G01260Cucurbita pepo (Zucchini)cpecpiB665
CSPI02G01260Cucurbita pepo (Zucchini)cpecpiB822
CSPI02G01260Bottle gourd (USVL1VR-Ls)cpilsiB096
CSPI02G01260Bottle gourd (USVL1VR-Ls)cpilsiB130
CSPI02G01260Melon (DHL92) v3.6.1cpimedB108
CSPI02G01260Melon (DHL92) v3.6.1cpimedB133
CSPI02G01260Silver-seed gourdcarcpiB0044
CSPI02G01260Silver-seed gourdcarcpiB0143
CSPI02G01260Silver-seed gourdcarcpiB0308
CSPI02G01260Silver-seed gourdcarcpiB0603