CsaV3_1G046340 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G046340
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 32154070 .. 32155954 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATTATGTAACGAAAGTTAAAATTGAGTATTATTATTGCTACTTTAGAAAGGAAAGTTGTATGTAGGGTATTTATCATAATTTAATTATGATAAAAAAGTGCCAAAAAGTTTAATTAAATTGAAACATGCAATATGGGATACCTCTATCCTTTCTTTGCCAAATATCCTTAAAAGGGTTAGCCTTTTGGATCTCAAACTCTACCTTTTTTCTTAACAAACAAATCTCTCTCTCTCTCTATCTCTCTCTCTTGATGGTTGAGATTTTGGGGATTATATGTGTTGGTTTGAGAGGTTGAAGCTGCCAGCATGATCTGATTTAATTTGCTGAATTCTCTTTTAATTTAGAGGTTTTTATAAAGCAATATTATTGAAATTAATAAGGCAAAAATGGGCTCTCTTTTTTTTTTTTTAATGGATTTTGATATTATGGTTTTCAAGGGTTTTTTTATATTTGAAAATCAGGTCATTCTAGCAGCTTCAATCACTCATTCACCAACAATTTTCATTTTACAATGCCCTCCAGTTTCTTCATTTCAGGTACACATATCCCCCCTTTTTTTCTCCTTTTCATTTGTCTATTGAAACTACCTGTTTGTGGTCTTCTTTATTCATTGATTATTTATTGTCTTTGCCTTTTATATGAACCTGAATTTAATGTTGTCTTATAGATTTTTTTTCTCCAAGAGGTGGGTTGTGGATTTTGCTTATTTGGAAAGGGTTGTTAAATTGCAAGGTAGTTTTTTTCTTTTTGTGTGTGATTTCAACCAAATAACATGGGAAGGTCATTAAGATTTGAAGGGGAAATGATATTCAGATGTGGATATGGGAATTCAATAATTAATCTTCTTTCTCTCTCCTTAAGTTTTCTCTCTCTAAAAAGTTTAATTTCATTGTAAAGGAACATCAAAGATATGAAAGAAATTTAAGTGTTGATGTCCTTTCTCTCAAATTTTCATCTTTAAAGCAACCCAAGAATTGGAATATATGGGCAGTCAATACCCTTATCCTCCCCAAGTTTTTATCTTGTTTTTGTCTTCAGAACAAAATTTGAATTCAAATGTTTTCTCATTTCAATGTTAATTTCATCTCTTTTAATTATATTTCTTGAGTTTTTTTTTTTTTTCACATTCAAAGCAAAGCAAAGACAATAGAATTGGAATTCAAATAATGCTGTTTCATAGTTTCAAGTTTTAATTTTGTTATACATTTATTGATATATATATAGGCCCTCTCTTTGCTCTTCCTTTCATTTTAAAGCAAACCAAAACATGGAATGGAAGTCAATCCCCTCCCCTCACTCTCCATAAGCTTTCAATTTTGTTATATTGTCAATGCTTTTAAGAGTCTTTTTGACCTGTGTGCTTGAATATTGTAGAAGATCAATAACAAATGGAAATCAATATTACAATGGGAAAAGGAAAGGATGTTAAACAGTAATCAAAGTTGGTGAGTTGGTAGGTTTTAACACTTTTTTTAGTCGATCAAGCCTTTGTATATGATCTTTAATTCCCTGATCAAGAAGAAATCAGTTGTTGTTTCAAATGTGAATTGGGTCTTTCTCATGTTATGTTTTTTTTTATAATTATGGTGCTAATTCTACCATATAAATTGTTTCCACTGGCGTCCATATGAGTATGTACAACTTTTGTTACTAAATTCAAGTTTAAGTTGTTTGAACATACGCACAAAACACTTTGTACGTCAAGGAAGATAAGAGAAAATAGAAGAAAAGTCAATTTATGGTCTCTGTATAGAAGTTTTTTCACACATTACATCAGGTGTGTCTGTTCTGAATTGTCTCAACTTTAAAACAGCATCCATACACACTCCAGAAATCAAAATATAGCAGCAGAGAGAGACAAATCTGTAAAAGAAACCACAG

mRNA sequence

ATGGGCTCTCTTTTTTTTTTTTTAATGGATTTTGATATTATGGTTTTCAAGGGTTTTTTTATATTTGAAAATCAGGTCATTCTAGCAGCTTCAATCACTCATTCACCAACAATTTTCATTTTACAATGCCCTCCAGTTTCTTCATTTCAGATTTTTTTTCTCCAAGAGGTGGGTTGTGGATTTTGCTTATTTGGAAAGGGTTGTTAA

Coding sequence (CDS)

ATGGGCTCTCTTTTTTTTTTTTTAATGGATTTTGATATTATGGTTTTCAAGGGTTTTTTTATATTTGAAAATCAGGTCATTCTAGCAGCTTCAATCACTCATTCACCAACAATTTTCATTTTACAATGCCCTCCAGTTTCTTCATTTCAGATTTTTTTTCTCCAAGAGGTGGGTTGTGGATTTTGCTTATTTGGAAAGGGTTGTTAA

Protein sequence

MGSLFFFLMDFDIMVFKGFFIFENQVILAASITHSPTIFILQCPPVSSFQIFFLQEVGCGFCLFGKGC
Homology
[Close]
BLAST of CsaV3_1G046340 vs. NCBI nr
Match: KGN66876.1 (hypothetical protein Csa_1G702010 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 3.5e-14
Identity = 49/62 (79.03%), Postives = 49/62 (79.03%), Query Frame = 0 

Query: 1  MGSLFFFLMDF------------DIMVFKGFFIFENQVILAASITHSPTIFILQCPPVSS 51
          MGSLFFFLM F            DIMVFKGFFIFENQVILAASITHSPTIFILQCPPVSS
Sbjct: 1  MGSLFFFLMVFLXXXXXXXXXXXDIMVFKGFFIFENQVILAASITHSPTIFILQCPPVSS 60

[Close]
BLAST of CsaV3_1G046340 vs. TrEMBL
Match: tr|A0A0A0M3T1|A0A0A0M3T1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G702010 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.3e-14
Identity = 49/62 (79.03%), Postives = 49/62 (79.03%), Query Frame = 0 

Query: 1  MGSLFFFLMDF------------DIMVFKGFFIFENQVILAASITHSPTIFILQCPPVSS 51
          MGSLFFFLM F            DIMVFKGFFIFENQVILAASITHSPTIFILQCPPVSS
Sbjct: 1  MGSLFFFLMVFLXXXXXXXXXXXDIMVFKGFFIFENQVILAASITHSPTIFILQCPPVSS 60

The following BLAST results are available for this feature:
BLAST of CsaV3_1G046340 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN66876.13.5e-1479.03hypothetical protein Csa_1G702010 [Cucumis sativus][more]
BLAST of CsaV3_1G046340 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G046340 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G046340 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0M3T1|A0A0A0M3T1_CUCSA2.3e-1479.03Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G702010 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G046340.1CsaV3_1G046340.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G046340CsGy1G032950Cucumber (Gy14) v2cgybcucB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G046340Silver-seed gourdcarcucB1000
CsaV3_1G046340Cucumber (Gy14) v1cgycucB037
CsaV3_1G046340Cucurbita maxima (Rimu)cmacucB0238
CsaV3_1G046340Cucurbita maxima (Rimu)cmacucB0477
CsaV3_1G046340Cucurbita moschata (Rifu)cmocucB0225
CsaV3_1G046340Cucurbita moschata (Rifu)cmocucB0465
CsaV3_1G046340Cucurbita pepo (Zucchini)cpecucB0022
CsaV3_1G046340Cucurbita pepo (Zucchini)cpecucB0637
CsaV3_1G046340Wild cucumber (PI 183967)cpicucB000
CsaV3_1G046340Bottle gourd (USVL1VR-Ls)cuclsiB034
CsaV3_1G046340Melon (DHL92) v3.5.1cucmeB012
CsaV3_1G046340Melon (DHL92) v3.6.1cucmedB011
CsaV3_1G046340Watermelon (Charleston Gray)cucwcgB025
CsaV3_1G046340Watermelon (97103) v1cucwmB051
CsaV3_1G046340Watermelon (97103) v2cucwmbB010
CsaV3_1G046340Wax gourdcucwgoB034