CsaV3_1G046340.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G046340.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 32154070 .. 32155954 (-)
Sequence length207
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATTATGTAACGAAAGTTAAAATTGAGTATTATTATTGCTACTTTAGAAAGGAAAGTTGTATGTAGGGTATTTATCATAATTTAATTATGATAAAAAAGTGCCAAAAAGTTTAATTAAATTGAAACATGCAATATGGGATACCTCTATCCTTTCTTTGCCAAATATCCTTAAAAGGGTTAGCCTTTTGGATCTCAAACTCTACCTTTTTTCTTAACAAACAAATCTCTCTCTCTCTCTATCTCTCTCTCTTGATGGTTGAGATTTTGGGGATTATATGTGTTGGTTTGAGAGGTTGAAGCTGCCAGCATGATCTGATTTAATTTGCTGAATTCTCTTTTAATTTAGAGGTTTTTATAAAGCAATATTATTGAAATTAATAAGGCAAAAATGGGCTCTCTTTTTTTTTTTTTAATGGATTTTGATATTATGGTTTTCAAGGGTTTTTTTATATTTGAAAATCAGGTCATTCTAGCAGCTTCAATCACTCATTCACCAACAATTTTCATTTTACAATGCCCTCCAGTTTCTTCATTTCAGGTACACATATCCCCCCTTTTTTTCTCCTTTTCATTTGTCTATTGAAACTACCTGTTTGTGGTCTTCTTTATTCATTGATTATTTATTGTCTTTGCCTTTTATATGAACCTGAATTTAATGTTGTCTTATAGATTTTTTTTCTCCAAGAGGTGGGTTGTGGATTTTGCTTATTTGGAAAGGGTTGTTAAATTGCAAGGTAGTTTTTTTCTTTTTGTGTGTGATTTCAACCAAATAACATGGGAAGGTCATTAAGATTTGAAGGGGAAATGATATTCAGATGTGGATATGGGAATTCAATAATTAATCTTCTTTCTCTCTCCTTAAGTTTTCTCTCTCTAAAAAGTTTAATTTCATTGTAAAGGAACATCAAAGATATGAAAGAAATTTAAGTGTTGATGTCCTTTCTCTCAAATTTTCATCTTTAAAGCAACCCAAGAATTGGAATATATGGGCAGTCAATACCCTTATCCTCCCCAAGTTTTTATCTTGTTTTTGTCTTCAGAACAAAATTTGAATTCAAATGTTTTCTCATTTCAATGTTAATTTCATCTCTTTTAATTATATTTCTTGAGTTTTTTTTTTTTTTCACATTCAAAGCAAAGCAAAGACAATAGAATTGGAATTCAAATAATGCTGTTTCATAGTTTCAAGTTTTAATTTTGTTATACATTTATTGATATATATATAGGCCCTCTCTTTGCTCTTCCTTTCATTTTAAAGCAAACCAAAACATGGAATGGAAGTCAATCCCCTCCCCTCACTCTCCATAAGCTTTCAATTTTGTTATATTGTCAATGCTTTTAAGAGTCTTTTTGACCTGTGTGCTTGAATATTGTAGAAGATCAATAACAAATGGAAATCAATATTACAATGGGAAAAGGAAAGGATGTTAAACAGTAATCAAAGTTGGTGAGTTGGTAGGTTTTAACACTTTTTTTAGTCGATCAAGCCTTTGTATATGATCTTTAATTCCCTGATCAAGAAGAAATCAGTTGTTGTTTCAAATGTGAATTGGGTCTTTCTCATGTTATGTTTTTTTTTATAATTATGGTGCTAATTCTACCATATAAATTGTTTCCACTGGCGTCCATATGAGTATGTACAACTTTTGTTACTAAATTCAAGTTTAAGTTGTTTGAACATACGCACAAAACACTTTGTACGTCAAGGAAGATAAGAGAAAATAGAAGAAAAGTCAATTTATGGTCTCTGTATAGAAGTTTTTTCACACATTACATCAGGTGTGTCTGTTCTGAATTGTCTCAACTTTAAAACAGCATCCATACACACTCCAGAAATCAAAATATAGCAGCAGAGAGAGACAAATCTGTAAAAGAAACCACAG

mRNA sequence

ATGGGCTCTCTTTTTTTTTTTTTAATGGATTTTGATATTATGGTTTTCAAGGGTTTTTTTATATTTGAAAATCAGGTCATTCTAGCAGCTTCAATCACTCATTCACCAACAATTTTCATTTTACAATGCCCTCCAGTTTCTTCATTTCAGATTTTTTTTCTCCAAGAGGTGGGTTGTGGATTTTGCTTATTTGGAAAGGGTTGTTAA

Coding sequence (CDS)

ATGGGCTCTCTTTTTTTTTTTTTAATGGATTTTGATATTATGGTTTTCAAGGGTTTTTTTATATTTGAAAATCAGGTCATTCTAGCAGCTTCAATCACTCATTCACCAACAATTTTCATTTTACAATGCCCTCCAGTTTCTTCATTTCAGATTTTTTTTCTCCAAGAGGTGGGTTGTGGATTTTGCTTATTTGGAAAGGGTTGTTAA

Protein sequence

MGSLFFFLMDFDIMVFKGFFIFENQVILAASITHSPTIFILQCPPVSSFQIFFLQEVGCGFCLFGKGC
Homology
[Close]
BLAST of CsaV3_1G046340.1 vs. NCBI nr
Match: KGN66876.1 (hypothetical protein Csa_1G702010 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 3.5e-14
Identity = 49/62 (79.03%), Postives = 49/62 (79.03%), Query Frame = 0 

Query: 1  MGSLFFFLMDF------------DIMVFKGFFIFENQVILAASITHSPTIFILQCPPVSS 51
          MGSLFFFLM F            DIMVFKGFFIFENQVILAASITHSPTIFILQCPPVSS
Sbjct: 1  MGSLFFFLMVFLXXXXXXXXXXXDIMVFKGFFIFENQVILAASITHSPTIFILQCPPVSS 60

[Close]
BLAST of CsaV3_1G046340.1 vs. TrEMBL
Match: tr|A0A0A0M3T1|A0A0A0M3T1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G702010 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.3e-14
Identity = 49/62 (79.03%), Postives = 49/62 (79.03%), Query Frame = 0 

Query: 1  MGSLFFFLMDF------------DIMVFKGFFIFENQVILAASITHSPTIFILQCPPVSS 51
          MGSLFFFLM F            DIMVFKGFFIFENQVILAASITHSPTIFILQCPPVSS
Sbjct: 1  MGSLFFFLMVFLXXXXXXXXXXXDIMVFKGFFIFENQVILAASITHSPTIFILQCPPVSS 60

The following BLAST results are available for this feature:
BLAST of CsaV3_1G046340.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN66876.13.5e-1479.03hypothetical protein Csa_1G702010 [Cucumis sativus][more]
BLAST of CsaV3_1G046340.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G046340.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G046340.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0M3T1|A0A0A0M3T1_CUCSA2.3e-1479.03Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G702010 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_1G046340CsaV3_1G046340gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G046340.1.cds2CsaV3_1G046340.1.cds2CDS
CsaV3_1G046340.1.cds1CsaV3_1G046340.1.cds1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G046340.1.exon2CsaV3_1G046340.1.exon2exon
CsaV3_1G046340.1.exon1CsaV3_1G046340.1.exon1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_1G046340.1CsaV3_1G046340.1-proteinpolypeptide