CsaV3_1G045260 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G045260
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionCTP-dependent diacylglycerol kinase
Locationchr1 : 30964836 .. 30966921 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTATCACTATTATCCAATTAGGGCTTCATTTGACTATGGAATAAGTTTCCTTCTTCTCCCGCCAACAGAAAACCTTCCCAGTTCATTAGTCTTTCAATCGTTCAATTTCCTTTTTTTATCTCTTATCCCCATTTCTTGCTGTTTCCACTCTATTCAAGAACAAGATCGATACTGCAACGGAGTTTATTGATTTGTCCTCTACAGGTACGTTCAAATTTGAGATGAATAATTACGCTATCTGTTACTGAAGTTGCACGGTCCTTCTCGAAATGCTGATTTATGTGTTAATTCTTCAATGGATTTTAAAATCATTTAGTAGTCTCTAATTTTGAATCCTAAATATAGGCTTGAAAGCATTCTGGAGTAGTAAATTGTAGCATATTTCAGAGAATCGAAGTCCGGAGAAGTTTGGAGTCTGTAAACACATGGTTCAGGATTTTTTTTTTTTTTTCGTTTACCAGTTGTTTGGGAGCTCTTTGAAAGATAATGAAATTTTCTTAATTGTATTGTAGTTTGTTTGGGTAGATATGGCTTACTTTCTAGAATCGAAGTTGTTCCTTCCTTCTACAGATCATATAGGACCATGAGCACTGGTTTCAAATGTTCAATAAAATCTTACATTCCTAAATAGAACTAGACTTGGAAACTAAATCTTGTAAGGTGCTTCGGAGTTGCAACAATTTGTTGCGTGAGAATACAAACCTCCGAACCTTCTGGTTGACGTTATATTGTCTTGAACAGTTAAGTTCAAGTTGATACAATTTAGAAGTTCCTTTTGATAATAGTTTTCAAATAGCAAACGCTTAGCCTTCCGTTGGCTGCTTTGTGATAAGATGCCGGTGTGCTAACCTTGGCCTAAGACTTACTTTATGAACTCTTCCAGATTTATCCACCTCTCGGTCTATAAATCCATTCCATTGTTGTCCAATATGATTCTCGTGCAGACTTATTACAATTTTAAGATACCTTTGTATTGAGTCAGATGAAATTTCCCTTTGAGTTCTGAGAGGCATGATTTGATGATGGGATGACATTCTCTTTGAATCGTACAACATATGACTGCATAGTTAGTCATTGAGGTTTACCTTTGAGTAACTCTATGATACTTGTTACTTAATTGATCAATTAGAGCTCTTTTGTATATGATTTGACTATTTGGTTTGGACGTTATCAGAGGGTTTTACTTTATAAATCACTCCCTTAGATTGCTTGTATGGATGTTCCCGTCTACTTTATAAATCATATTTCAGTCAAGGTTACATTTTCACACTAGCTCTCTTGTAGTTATTTGTAACTAAACAAGTAATGAAGTCCCCTCGGAATTTTAAAGTATTCGTGTCGTGCTTTGATTTTTATCTCATTTTTAGTTGTGTGTTGCGTTAACCTTTGCCAGACTCAATGGATGCCCCAGCTGAAGAAGACATTCCTCTAAGGCCTCGGGTTAAGGTCTCACTTTGCCTAGGATCAGAGACACATTTGGTCAATACAGCTAATAAAGGCACCCTTTCTGAGCAGCTGACTTCCATGAAAGAGGATAGCATGGCCATTTTGAAGGAGTACATAACCAAACATAATGTTCCTAATGATGTCCCGGACGAACTAGTTGAAGAAGCTTCTGAGGACGATGATGAAATCACTGAAAAACCTCAAGTGAAGGCAAAGAAGACAAAAGTAACATAATTTCTCTCTCTGTTCATGGGCCAAACCCTGAAATTCTAAAGAACAAAAATAGTGTCTTGGAAGAGAATATAGAACGTAACTTTAAGTTCATTAGTGTTCTCTAAATGTGCTTGGTCTGTGTCATTTGTTCGTTTCAATACCTTGGACCCCTTTTCTGATTCTAAGTTCTAACTAGTTTCCCTCTCCTTCATTTTCATTTTTCATGATTAGGGAAAATTAATAGCATTGAAAGATTCAAACCAATGTGGAATTAGATGTATTTAGTTTAAATTATTAATCGAGATCCTATTTTTCTGTCTCATGTGCTTTAGGATTGCTTTGTAACGTTTATGCACAAAGATGATGAATTAAAGATATATGATTGGTTCCACGTCAATTATTGACTAATAAACCAAAATGAGGAC

mRNA sequence

ATGGATGCCCCAGCTGAAGAAGACATTCCTCTAAGGCCTCGGGTTAAGGTCTCACTTTGCCTAGGATCAGAGACACATTTGGTCAATACAGCTAATAAAGGCACCCTTTCTGAGCAGCTGACTTCCATGAAAGAGGATAGCATGGCCATTTTGAAGGAGTACATAACCAAACATAATGTTCCTAATGATGTCCCGGACGAACTAGTTGAAGAAGCTTCTGAGGACGATGATGAAATCACTGAAAAACCTCAAGTGAAGGCAAAGAAGACAAAAGTAACATAA

Coding sequence (CDS)

ATGGATGCCCCAGCTGAAGAAGACATTCCTCTAAGGCCTCGGGTTAAGGTCTCACTTTGCCTAGGATCAGAGACACATTTGGTCAATACAGCTAATAAAGGCACCCTTTCTGAGCAGCTGACTTCCATGAAAGAGGATAGCATGGCCATTTTGAAGGAGTACATAACCAAACATAATGTTCCTAATGATGTCCCGGACGAACTAGTTGAAGAAGCTTCTGAGGACGATGATGAAATCACTGAAAAACCTCAAGTGAAGGCAAAGAAGACAAAAGTAACATAA

Protein sequence

MDAPAEEDIPLRPRVKVSLCLGSETHLVNTANKGTLSEQLTSMKEDSMAILKEYITKHNVPNDVPDELVEEASEDDDEITEKPQVKAKKTKVT
Homology
[Close]
BLAST of CsaV3_1G045260 vs. NCBI nr
Match: XP_011660263.1 (PREDICTED: uncharacterized protein LOC105436354 [Cucumis sativus] >XP_011660264.1 PREDICTED: uncharacterized protein LOC105436354 [Cucumis sativus] >KGN66757.1 hypothetical protein Csa_1G679550 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 1.5e-36
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1  MDAPAEEDIPLRPRVKVSLCLGSETHLVNTANKGTLSEQLTSMKEDSMAILKEYITKHNV 60
          MDAPAEEDIPLRPRVKVSLCLGSETHLVNTANKGTLSEQLTSMKEDSMAILKEYITKHNV
Sbjct: 1  MDAPAEEDIPLRPRVKVSLCLGSETHLVNTANKGTLSEQLTSMKEDSMAILKEYITKHNV 60

Query: 61 PNDVXXXXXXXXXXDDDEITEKPQVKAKKTKVT 94
          PNDVXXXXXXXXXXDDDEITEKPQVKAKKTKVT
Sbjct: 61 PNDVXXXXXXXXXXDDDEITEKPQVKAKKTKVT 93

[Close]
BLAST of CsaV3_1G045260 vs. NCBI nr
Match: XP_008443784.1 (PREDICTED: uncharacterized protein LOC103487289 [Cucumis melo])

HSP 1 Score: 155.2 bits (391), Expect = 1.1e-34
Identity = 90/93 (96.77%), Postives = 90/93 (96.77%), Query Frame = 0 

Query: 1  MDAPAEEDIPLRPRVKVSLCLGSETHLVNTANKGTLSEQLTSMKEDSMAILKEYITKHNV 60
          MDAPAEEDIPLRPRVKVS CLGSE HLVNTANKGTLSEQL SMKEDSMAILKEYITKHNV
Sbjct: 7  MDAPAEEDIPLRPRVKVSFCLGSEIHLVNTANKGTLSEQLISMKEDSMAILKEYITKHNV 66

Query: 61 PNDVXXXXXXXXXXDDDEITEKPQVKAKKTKVT 94
          PNDVXXXXXXXXXXDDDEITEKPQVKAKKTKVT
Sbjct: 67 PNDVXXXXXXXXXXDDDEITEKPQVKAKKTKVT 99

[Close]
BLAST of CsaV3_1G045260 vs. NCBI nr
Match: XP_022948365.1 (uncharacterized protein LOC111452065 [Cucurbita moschata])

HSP 1 Score: 108.2 bits (269), Expect = 1.5e-20
Identity = 69/94 (73.40%), Postives = 73/94 (77.66%), Query Frame = 0 

Query: 1  MDAPAEEDIPLRPRVKVSLCLGSETHLVNTANKGTLSEQLTSMKEDSMAILKEYITKHNV 60
          MDA A+E I   PRVK S  LGSE HLVNTANKGTLSEQL SMKE+SMAILKEYITKHNV
Sbjct: 1  MDAQAQEVISRSPRVKASFRLGSEKHLVNTANKGTLSEQLISMKEESMAILKEYITKHNV 60

Query: 61 PNDV-XXXXXXXXXXDDDEITEKPQVKAKKTKVT 94
          PNDV    XXXXXXX       KPQVK+KKTK+T
Sbjct: 61 PNDVPDELXXXXXXXXXXXXXXKPQVKSKKTKLT 94

[Close]
BLAST of CsaV3_1G045260 vs. NCBI nr
Match: XP_023523488.1 (uncharacterized protein LOC111787690 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 107.1 bits (266), Expect = 3.4e-20
Identity = 68/94 (72.34%), Postives = 73/94 (77.66%), Query Frame = 0 

Query: 1  MDAPAEEDIPLRPRVKVSLCLGSETHLVNTANKGTLSEQLTSMKEDSMAILKEYITKHNV 60
          MDA A+E I   PRVK S  LG+E HLVNTANKGTLSEQL SMKE+SMAILKEYITKHNV
Sbjct: 1  MDAQAQEVISRSPRVKASFRLGTEKHLVNTANKGTLSEQLISMKEESMAILKEYITKHNV 60

Query: 61 PNDV-XXXXXXXXXXDDDEITEKPQVKAKKTKVT 94
          PNDV    XXXXXXX       KPQVK+KKTK+T
Sbjct: 61 PNDVPDELXXXXXXXXXXXXXXKPQVKSKKTKLT 94

[Close]
BLAST of CsaV3_1G045260 vs. NCBI nr
Match: XP_024019481.1 (uncharacterized protein LOC21393075 [Morus notabilis])

HSP 1 Score: 102.4 bits (254), Expect = 8.3e-19
Identity = 55/93 (59.14%), Postives = 70/93 (75.27%), Query Frame = 0 

Query: 1  MDAPAEEDIPLRPRVKVSLCLGSETHLVNTANKGTLSEQLTSMKEDSMAILKEYITKHNV 60
          M+A  +E +P +P+V+V+  LG+ET+  N ANKGTLSEQL S+KE+SMAILK+YITK+NV
Sbjct: 1  MEAQVQEAVPPQPQVQVTFSLGTETYSAN-ANKGTLSEQLASVKEESMAILKDYITKYNV 60

Query: 61 PNDV-XXXXXXXXXXDDDEITEKPQVKAKKTKV 93
          PNDV           DDDEI EKPQ K+KKTK+
Sbjct: 61 PNDVPDEPLEESSSGDDDEIIEKPQAKSKKTKI 92

[Close]
BLAST of CsaV3_1G045260 vs. TAIR10
Match: AT1G47820.1 (unknown protein)

HSP 1 Score: 47.8 bits (112), Expect = 4.4e-06
Identity = 23/57 (40.35%), Postives = 38/57 (66.67%), Query Frame = 0 

Query: 1  MDAPAEEDIPLRPRVKVSLCLGSETHLVNTANKGTLSEQLTSMKEDSMAILKEYITK 58
          M+  +   +P +  VKV   LG+E++ +++    T+ +QL SMKE+SM ILK++ITK
Sbjct: 1  MEIESHVSVPGKNLVKVEFKLGTESYTIDSIKGDTVLDQLVSMKEESMKILKDFITK 57

[Close]
BLAST of CsaV3_1G045260 vs. TrEMBL
Match: tr|A0A0A0M0V3|A0A0A0M0V3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G679550 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.0e-36
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1  MDAPAEEDIPLRPRVKVSLCLGSETHLVNTANKGTLSEQLTSMKEDSMAILKEYITKHNV 60
          MDAPAEEDIPLRPRVKVSLCLGSETHLVNTANKGTLSEQLTSMKEDSMAILKEYITKHNV
Sbjct: 1  MDAPAEEDIPLRPRVKVSLCLGSETHLVNTANKGTLSEQLTSMKEDSMAILKEYITKHNV 60

Query: 61 PNDVXXXXXXXXXXDDDEITEKPQVKAKKTKVT 94
          PNDVXXXXXXXXXXDDDEITEKPQVKAKKTKVT
Sbjct: 61 PNDVXXXXXXXXXXDDDEITEKPQVKAKKTKVT 93

[Close]
BLAST of CsaV3_1G045260 vs. TrEMBL
Match: tr|A0A1S3B8U1|A0A1S3B8U1_CUCME (uncharacterized protein LOC103487289 OS=Cucumis melo OX=3656 GN=LOC103487289 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 7.2e-35
Identity = 90/93 (96.77%), Postives = 90/93 (96.77%), Query Frame = 0 

Query: 1  MDAPAEEDIPLRPRVKVSLCLGSETHLVNTANKGTLSEQLTSMKEDSMAILKEYITKHNV 60
          MDAPAEEDIPLRPRVKVS CLGSE HLVNTANKGTLSEQL SMKEDSMAILKEYITKHNV
Sbjct: 7  MDAPAEEDIPLRPRVKVSFCLGSEIHLVNTANKGTLSEQLISMKEDSMAILKEYITKHNV 66

Query: 61 PNDVXXXXXXXXXXDDDEITEKPQVKAKKTKVT 94
          PNDVXXXXXXXXXXDDDEITEKPQVKAKKTKVT
Sbjct: 67 PNDVXXXXXXXXXXDDDEITEKPQVKAKKTKVT 99

[Close]
BLAST of CsaV3_1G045260 vs. TrEMBL
Match: tr|W9QJW0|W9QJW0_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_009756 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.5e-19
Identity = 55/93 (59.14%), Postives = 70/93 (75.27%), Query Frame = 0 

Query: 1   MDAPAEEDIPLRPRVKVSLCLGSETHLVNTANKGTLSEQLTSMKEDSMAILKEYITKHNV 60
           M+A  +E +P +P+V+V+  LG+ET+  N ANKGTLSEQL S+KE+SMAILK+YITK+NV
Sbjct: 62  MEAQVQEAVPPQPQVQVTFSLGTETYSAN-ANKGTLSEQLASVKEESMAILKDYITKYNV 121

Query: 61  PNDV-XXXXXXXXXXDDDEITEKPQVKAKKTKV 93
           PNDV           DDDEI EKPQ K+KKTK+
Sbjct: 122 PNDVPDEPLEESSSGDDDEIIEKPQAKSKKTKI 153

[Close]
BLAST of CsaV3_1G045260 vs. TrEMBL
Match: tr|A0A2P6PI95|A0A2P6PI95_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0241611 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 9.4e-19
Identity = 55/93 (59.14%), Postives = 67/93 (72.04%), Query Frame = 0 

Query: 1  MDAPAEEDIPLRPRVKVSLCLGSETHLVNTANKGTLSEQLTSMKEDSMAILKEYITKHNV 60
          M+   +E +  RP+VKV   LGSET+ V + NKG LSEQL S+KE+SMAILK++ITKHNV
Sbjct: 1  MEVQIQESVVGRPQVKVQFQLGSETYSV-SGNKGILSEQLVSVKEESMAILKDFITKHNV 60

Query: 61 PNDVXXXXXXXXXXDDDEITEKPQVKAKKTKVT 94
          PNDV          DD EI EKPQVK+KKTK+T
Sbjct: 61 PNDVPDEPVEDSSEDDGEILEKPQVKSKKTKLT 92

[Close]
BLAST of CsaV3_1G045260 vs. TrEMBL
Match: tr|A0A2C9VU52|A0A2C9VU52_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G003000 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.3e-17
Identity = 51/93 (54.84%), Postives = 65/93 (69.89%), Query Frame = 0 

Query: 1  MDAPAEEDIPLRPRVKVSLCLGSETHLVNTANKGTLSEQLTSMKEDSMAILKEYITKHNV 60
          M+A A + I   P VK +L LGSET+ V+ +   T+SE+L SMKE SM+ILKE+ITKHNV
Sbjct: 1  MEAQAHDAITRGPYVKATLKLGSETYTVDASKGSTISEELVSMKEKSMSILKEFITKHNV 60

Query: 61 PNDVXXXXXXXXXXDDDEITEKPQVKAKKTKVT 94
          PNDV          D++EI EKP VK+KKTK+T
Sbjct: 61 PNDVPDDLVESSSEDEEEIPEKPHVKSKKTKLT 93

The following BLAST results are available for this feature:
BLAST of CsaV3_1G045260 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011660263.11.5e-36100.00PREDICTED: uncharacterized protein LOC105436354 [Cucumis sativus] >XP_011660264.... [more]
XP_008443784.11.1e-3496.77PREDICTED: uncharacterized protein LOC103487289 [Cucumis melo][more]
XP_022948365.11.5e-2073.40uncharacterized protein LOC111452065 [Cucurbita moschata][more]
XP_023523488.13.4e-2072.34uncharacterized protein LOC111787690 [Cucurbita pepo subsp. pepo][more]
XP_024019481.18.3e-1959.14uncharacterized protein LOC21393075 [Morus notabilis][more]
BLAST of CsaV3_1G045260 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G47820.14.4e-0640.35unknown protein[more]
BLAST of CsaV3_1G045260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G045260 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0M0V3|A0A0A0M0V3_CUCSA1.0e-36100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G679550 PE=4 SV=1[more]
tr|A0A1S3B8U1|A0A1S3B8U1_CUCME7.2e-3596.77uncharacterized protein LOC103487289 OS=Cucumis melo OX=3656 GN=LOC103487289 PE=... [more]
tr|W9QJW0|W9QJW0_9ROSA5.5e-1959.14Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_009756 PE=4 SV=1[more]
tr|A0A2P6PI95|A0A2P6PI95_ROSCH9.4e-1959.14Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0241611 PE=4... [more]
tr|A0A2C9VU52|A0A2C9VU52_MANES2.3e-1754.84Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G003000 PE=4 SV=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G045260.1CsaV3_1G045260.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..93
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..93
NoneNo IPR availablePANTHERPTHR37194FAMILY NOT NAMEDcoord: 2..92

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G045260CSPI01G33270Wild cucumber (PI 183967)cpicucB000
CsaV3_1G045260Cucsa.291910Cucumber (Gy14) v1cgycucB451
CsaV3_1G045260CsGy1G031980Cucumber (Gy14) v2cgybcucB001
CsaV3_1G045260MELO3C010153Melon (DHL92) v3.5.1cucmeB044
CsaV3_1G045260MELO3C010153.2Melon (DHL92) v3.6.1cucmedB041
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G045260Silver-seed gourdcarcucB0949
CsaV3_1G045260Cucurbita maxima (Rimu)cmacucB0072
CsaV3_1G045260Cucurbita maxima (Rimu)cmacucB0099
CsaV3_1G045260Cucurbita moschata (Rifu)cmocucB0059
CsaV3_1G045260Cucurbita moschata (Rifu)cmocucB0090
CsaV3_1G045260Cucurbita pepo (Zucchini)cpecucB0799
CsaV3_1G045260Cucurbita pepo (Zucchini)cpecucB0874
CsaV3_1G045260Bottle gourd (USVL1VR-Ls)cuclsiB068