CsGy1G031980 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G031980
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionhypothetical protein
LocationChr1 : 31094614 .. 31096114 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCACTGGTTTCAAATGTTCAATAAAATCTTACATTCCTAAATAGAACTAGACTTGGAAACTAAATCTTGTAAGGTGCTTCGGAGTTGCAACAATTTGTTGCGTGAGAATACAAACCTCCGAACCTTCTGGTTGACGTTATATTGTCTTGAACAGTTAAGTTCAAGTTGATACAATTTAGAAGTTCCTTTTGATAATAGTTTTCAAATAGCAAACGCTTAGCCTTCCGTTGGCTGCTTTGTGATAAGATGCCGGTGTGCTAACCTTGGCCTAAGACTTACTTTATGAACTCTTCCAGATTTATCCACCTCTCGGTCTATAAATCCATTCCATTGTTGTCCAATATGATTCTCGTGCAGACTTATTACAATTTTAAGATACCTTTGTATTGAGTCAGATGAAATTTCCCTTTGAGTTCTGAGAGGCATGATTTGATGATGGGATGACATTCTCTTTGAATCGTACAACATATGACTGCATAGTTAGTCATTGAGGTTTACCTTTGAGTAACTCTATGATACTTGTTACTTAATTGATCAATTAGAGCTCTTTTGTATATGATTTGACTATTTGGTTTGGACGTTATCAGAGGGTTTTACTTTATAAATCACTCCCTTAGATTGCTTGTATGGATGTTCCCGTCTACTTTATAAATCATATTTCAGTCAAGGTTACATTTTCACACTAGCTCTCTTGTAGTTATTTGTAACTAAACAAGTAATGAAGTCCCCTCGGAATTTTAAAGTATTCGTGTCGTGCTTTGATTTTTATCTCATTTTTAGTTGTGTGTTGCGTTAACCTTTGCCAGACTCAATGGATGCCCCAGCTGAAGAAGACATTCCTCTAAGGCCTCGGGTTAAGGTCTCACTTTGCCTAGGATCAGAGACACATTTGGTCAATACAGCTAATAAAGGCACCCTTTCTGAGCAGCTGACTTCCATGAAAGAGGATAGCATGGCCATTTTGAAGGAGTACATAACCAAACATAATGTTCCTAATGATGTCCCGGACGAACTAGTTGAAGAAGCTTCTGAGGACGATGATGAAATCACTGAAAAACCTCAAGTGAAGGCAAAGAAGACAAAAGTAACATAATTTCTCTCTCTGTTCATGGGCCAAACCCTGAAATTCTAAAGAACAAAAATAGTGTCTTGGAAGAGAATATAGAACGTAACTTTAAGTTCATTAGTGTTCTCTAAATGTGCTTGGTCTGTGTCATTTGTTCGTTTCAATACCTTGGACCCCTTTTCTGATTCTAAGTTCTAACTAGTTTCCCTCTCCTTCATTTTCATTTTTCATGATTAGGGAAAATTAATAGCATTGAAAGATTCAAACCAATGTGGAATTAGATGTATTTAGTTTAAATTATTAATCGAGATCCTATTTTTCTGTCTCATGTGCTTTAGGATTGCTTTGTAACGTTTATGCACAAAGATGATGAATTAAAGATATATGATTGGTTCCACGTCAATTATTGACTAATAAACCAAAATGAGGAC

mRNA sequence

ATGAGCACTGACTCAATGGATGCCCCAGCTGAAGAAGACATTCCTCTAAGGCCTCGGGTTAAGGTCTCACTTTGCCTAGGATCAGAGACACATTTGGTCAATACAGCTAATAAAGGCACCCTTTCTGAGCAGCTGACTTCCATGAAAGAGGATAGCATGGCCATTTTGAAGGAGTACATAACCAAACATAATGTTCCTAATGATGTCCCGGACGAACTAGTTGAAGAAGCTTCTGAGGACGATGATGAAATCACTGAAAAACCTCAAGTGAAGGCAAAGAAGACAAAAGTAACATAATTTCTCTCTCTGTTCATGGGCCAAACCCTGAAATTCTAAAGAACAAAAATAGTGTCTTGGAAGAGAATATAGAACGTAACTTTAAGTTCATTAGTGTTCTCTAAATGTGCTTGGTCTGTGTCATTTGTTCGTTTCAATACCTTGGACCCCTTTTCTGATTCTAAGTTCTAACTAGTTTCCCTCTCCTTCATTTTCATTTTTCATGATTAGGGAAAATTAATAGCATTGAAAGATTCAAACCAATGTGGAATTAGATGTATTTAGTTTAAATTATTAATCGAGATCCTATTTTTCTGTCTCATGTGCTTTAGGATTGCTTTGTAACGTTTATGCACAAAGATGATGAATTAAAGATATATGATTGGTTCCACGTCAATTATTGACTAATAAACCAAAATGAGGAC

Coding sequence (CDS)

ATGAGCACTGACTCAATGGATGCCCCAGCTGAAGAAGACATTCCTCTAAGGCCTCGGGTTAAGGTCTCACTTTGCCTAGGATCAGAGACACATTTGGTCAATACAGCTAATAAAGGCACCCTTTCTGAGCAGCTGACTTCCATGAAAGAGGATAGCATGGCCATTTTGAAGGAGTACATAACCAAACATAATGTTCCTAATGATGTCCCGGACGAACTAGTTGAAGAAGCTTCTGAGGACGATGATGAAATCACTGAAAAACCTCAAGTGAAGGCAAAGAAGACAAAAGTAACATAA

Protein sequence

MSTDSMDAPAEEDIPLRPRVKVSLCLGSETHLVNTANKGTLSEQLTSMKEDSMAILKEYITKHNVPNDVPDELVEEASEDDDEITEKPQVKAKKTKVT
Homology
[Close]
BLAST of CsGy1G031980 vs. NCBI nr
Match: XP_011660263.1 (PREDICTED: uncharacterized protein LOC105436354 [Cucumis sativus] >XP_011660264.1 PREDICTED: uncharacterized protein LOC105436354 [Cucumis sativus] >KGN66757.1 hypothetical protein Csa_1G679550 [Cucumis sativus])

HSP 1 Score: 159.8 bits (403), Expect = 4.6e-36
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 6  MDAPAEEDIPLRPRVKVSLCLGSETHLVNTANKGTLSEQLTSMKEDSMAILKEYITKHNV 65
          MDAPAEEDIPLRPRVKVSLCLGSETHLVNTANKGTLSEQLTSMKEDSMAILKEYITKHNV
Sbjct: 1  MDAPAEEDIPLRPRVKVSLCLGSETHLVNTANKGTLSEQLTSMKEDSMAILKEYITKHNV 60

Query: 66 PNDVXXXXXXXXXXDDDEITEKPQVKAKKTKVT 99
          PNDVXXXXXXXXXXDDDEITEKPQVKAKKTKVT
Sbjct: 61 PNDVXXXXXXXXXXDDDEITEKPQVKAKKTKVT 93

[Close]
BLAST of CsGy1G031980 vs. NCBI nr
Match: XP_008443784.1 (PREDICTED: uncharacterized protein LOC103487289 [Cucumis melo])

HSP 1 Score: 157.5 bits (397), Expect = 2.3e-35
Identity = 92/95 (96.84%), Postives = 92/95 (96.84%), Query Frame = 0 

Query: 4  DSMDAPAEEDIPLRPRVKVSLCLGSETHLVNTANKGTLSEQLTSMKEDSMAILKEYITKH 63
          DSMDAPAEEDIPLRPRVKVS CLGSE HLVNTANKGTLSEQL SMKEDSMAILKEYITKH
Sbjct: 5  DSMDAPAEEDIPLRPRVKVSFCLGSEIHLVNTANKGTLSEQLISMKEDSMAILKEYITKH 64

Query: 64 NVPNDVXXXXXXXXXXDDDEITEKPQVKAKKTKVT 99
          NVPNDVXXXXXXXXXXDDDEITEKPQVKAKKTKVT
Sbjct: 65 NVPNDVXXXXXXXXXXDDDEITEKPQVKAKKTKVT 99

[Close]
BLAST of CsGy1G031980 vs. NCBI nr
Match: XP_022948365.1 (uncharacterized protein LOC111452065 [Cucurbita moschata])

HSP 1 Score: 106.7 bits (265), Expect = 4.6e-20
Identity = 69/94 (73.40%), Postives = 73/94 (77.66%), Query Frame = 0 

Query: 6  MDAPAEEDIPLRPRVKVSLCLGSETHLVNTANKGTLSEQLTSMKEDSMAILKEYITKHNV 65
          MDA A+E I   PRVK S  LGSE HLVNTANKGTLSEQL SMKE+SMAILKEYITKHNV
Sbjct: 1  MDAQAQEVISRSPRVKASFRLGSEKHLVNTANKGTLSEQLISMKEESMAILKEYITKHNV 60

Query: 66 PNDV-XXXXXXXXXXDDDEITEKPQVKAKKTKVT 99
          PNDV    XXXXXXX       KPQVK+KKTK+T
Sbjct: 61 PNDVPDELXXXXXXXXXXXXXXKPQVKSKKTKLT 94

[Close]
BLAST of CsGy1G031980 vs. NCBI nr
Match: XP_023523488.1 (uncharacterized protein LOC111787690 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 105.5 bits (262), Expect = 1.0e-19
Identity = 68/94 (72.34%), Postives = 73/94 (77.66%), Query Frame = 0 

Query: 6  MDAPAEEDIPLRPRVKVSLCLGSETHLVNTANKGTLSEQLTSMKEDSMAILKEYITKHNV 65
          MDA A+E I   PRVK S  LG+E HLVNTANKGTLSEQL SMKE+SMAILKEYITKHNV
Sbjct: 1  MDAQAQEVISRSPRVKASFRLGTEKHLVNTANKGTLSEQLISMKEESMAILKEYITKHNV 60

Query: 66 PNDV-XXXXXXXXXXDDDEITEKPQVKAKKTKVT 99
          PNDV    XXXXXXX       KPQVK+KKTK+T
Sbjct: 61 PNDVPDELXXXXXXXXXXXXXXKPQVKSKKTKLT 94

[Close]
BLAST of CsGy1G031980 vs. NCBI nr
Match: XP_024019481.1 (uncharacterized protein LOC21393075 [Morus notabilis])

HSP 1 Score: 101.3 bits (251), Expect = 1.9e-18
Identity = 55/93 (59.14%), Postives = 70/93 (75.27%), Query Frame = 0 

Query: 6  MDAPAEEDIPLRPRVKVSLCLGSETHLVNTANKGTLSEQLTSMKEDSMAILKEYITKHNV 65
          M+A  +E +P +P+V+V+  LG+ET+  N ANKGTLSEQL S+KE+SMAILK+YITK+NV
Sbjct: 1  MEAQVQEAVPPQPQVQVTFSLGTETYSAN-ANKGTLSEQLASVKEESMAILKDYITKYNV 60

Query: 66 PNDV-XXXXXXXXXXDDDEITEKPQVKAKKTKV 98
          PNDV           DDDEI EKPQ K+KKTK+
Sbjct: 61 PNDVPDEPLEESSSGDDDEIIEKPQAKSKKTKI 92

[Close]
BLAST of CsGy1G031980 vs. TAIR10
Match: AT1G47820.1 (unknown protein)

HSP 1 Score: 47.8 bits (112), Expect = 4.6e-06
Identity = 23/57 (40.35%), Postives = 38/57 (66.67%), Query Frame = 0 

Query: 6  MDAPAEEDIPLRPRVKVSLCLGSETHLVNTANKGTLSEQLTSMKEDSMAILKEYITK 63
          M+  +   +P +  VKV   LG+E++ +++    T+ +QL SMKE+SM ILK++ITK
Sbjct: 1  MEIESHVSVPGKNLVKVEFKLGTESYTIDSIKGDTVLDQLVSMKEESMKILKDFITK 57

[Close]
BLAST of CsGy1G031980 vs. TrEMBL
Match: tr|A0A0A0M0V3|A0A0A0M0V3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G679550 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 3.0e-36
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 6  MDAPAEEDIPLRPRVKVSLCLGSETHLVNTANKGTLSEQLTSMKEDSMAILKEYITKHNV 65
          MDAPAEEDIPLRPRVKVSLCLGSETHLVNTANKGTLSEQLTSMKEDSMAILKEYITKHNV
Sbjct: 1  MDAPAEEDIPLRPRVKVSLCLGSETHLVNTANKGTLSEQLTSMKEDSMAILKEYITKHNV 60

Query: 66 PNDVXXXXXXXXXXDDDEITEKPQVKAKKTKVT 99
          PNDVXXXXXXXXXXDDDEITEKPQVKAKKTKVT
Sbjct: 61 PNDVXXXXXXXXXXDDDEITEKPQVKAKKTKVT 93

[Close]
BLAST of CsGy1G031980 vs. TrEMBL
Match: tr|A0A1S3B8U1|A0A1S3B8U1_CUCME (uncharacterized protein LOC103487289 OS=Cucumis melo OX=3656 GN=LOC103487289 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.5e-35
Identity = 92/95 (96.84%), Postives = 92/95 (96.84%), Query Frame = 0 

Query: 4  DSMDAPAEEDIPLRPRVKVSLCLGSETHLVNTANKGTLSEQLTSMKEDSMAILKEYITKH 63
          DSMDAPAEEDIPLRPRVKVS CLGSE HLVNTANKGTLSEQL SMKEDSMAILKEYITKH
Sbjct: 5  DSMDAPAEEDIPLRPRVKVSFCLGSEIHLVNTANKGTLSEQLISMKEDSMAILKEYITKH 64

Query: 64 NVPNDVXXXXXXXXXXDDDEITEKPQVKAKKTKVT 99
          NVPNDVXXXXXXXXXXDDDEITEKPQVKAKKTKVT
Sbjct: 65 NVPNDVXXXXXXXXXXDDDEITEKPQVKAKKTKVT 99

[Close]
BLAST of CsGy1G031980 vs. TrEMBL
Match: tr|W9QJW0|W9QJW0_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_009756 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.3e-18
Identity = 55/93 (59.14%), Postives = 70/93 (75.27%), Query Frame = 0 

Query: 6   MDAPAEEDIPLRPRVKVSLCLGSETHLVNTANKGTLSEQLTSMKEDSMAILKEYITKHNV 65
           M+A  +E +P +P+V+V+  LG+ET+  N ANKGTLSEQL S+KE+SMAILK+YITK+NV
Sbjct: 62  MEAQVQEAVPPQPQVQVTFSLGTETYSAN-ANKGTLSEQLASVKEESMAILKDYITKYNV 121

Query: 66  PNDV-XXXXXXXXXXDDDEITEKPQVKAKKTKV 98
           PNDV           DDDEI EKPQ K+KKTK+
Sbjct: 122 PNDVPDEPLEESSSGDDDEIIEKPQAKSKKTKI 153

[Close]
BLAST of CsGy1G031980 vs. TrEMBL
Match: tr|A0A2P6PI95|A0A2P6PI95_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0241611 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.8e-18
Identity = 55/93 (59.14%), Postives = 67/93 (72.04%), Query Frame = 0 

Query: 6  MDAPAEEDIPLRPRVKVSLCLGSETHLVNTANKGTLSEQLTSMKEDSMAILKEYITKHNV 65
          M+   +E +  RP+VKV   LGSET+ V + NKG LSEQL S+KE+SMAILK++ITKHNV
Sbjct: 1  MEVQIQESVVGRPQVKVQFQLGSETYSV-SGNKGILSEQLVSVKEESMAILKDFITKHNV 60

Query: 66 PNDVXXXXXXXXXXDDDEITEKPQVKAKKTKVT 99
          PNDV          DD EI EKPQVK+KKTK+T
Sbjct: 61 PNDVPDEPVEDSSEDDGEILEKPQVKSKKTKLT 92

[Close]
BLAST of CsGy1G031980 vs. TrEMBL
Match: tr|M5VL14|M5VL14_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G271600 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 7.0e-17
Identity = 52/93 (55.91%), Postives = 63/93 (67.74%), Query Frame = 0 

Query: 6  MDAPAEEDIPLRPRVKVSLCLGSETHLVNTANKGTLSEQLTSMKEDSMAILKEYITKHNV 65
          M+A  +E +P RP+VKV   LGSET+ VN  N G LSEQ+ S+KE+SM ILK++IT+HNV
Sbjct: 1  MEAQIQESVPCRPQVKVKFQLGSETYSVN-RNTGILSEQVVSVKEESMNILKDFITRHNV 60

Query: 66 PNDVXXXXXXXXXXDDDEITEKPQVKAKKTKVT 99
          PNDV          DD EI E P VK KKTK T
Sbjct: 61 PNDVTDELVENSSEDDGEIPENPPVKLKKTKFT 92

The following BLAST results are available for this feature:
BLAST of CsGy1G031980 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011660263.14.6e-36100.00PREDICTED: uncharacterized protein LOC105436354 [Cucumis sativus] >XP_011660264.... [more]
XP_008443784.12.3e-3596.84PREDICTED: uncharacterized protein LOC103487289 [Cucumis melo][more]
XP_022948365.14.6e-2073.40uncharacterized protein LOC111452065 [Cucurbita moschata][more]
XP_023523488.11.0e-1972.34uncharacterized protein LOC111787690 [Cucurbita pepo subsp. pepo][more]
XP_024019481.11.9e-1859.14uncharacterized protein LOC21393075 [Morus notabilis][more]
BLAST of CsGy1G031980 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G47820.14.6e-0640.35unknown protein[more]
BLAST of CsGy1G031980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy1G031980 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0M0V3|A0A0A0M0V3_CUCSA3.0e-36100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G679550 PE=4 SV=1[more]
tr|A0A1S3B8U1|A0A1S3B8U1_CUCME1.5e-3596.84uncharacterized protein LOC103487289 OS=Cucumis melo OX=3656 GN=LOC103487289 PE=... [more]
tr|W9QJW0|W9QJW0_9ROSA1.3e-1859.14Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_009756 PE=4 SV=1[more]
tr|A0A2P6PI95|A0A2P6PI95_ROSCH2.8e-1859.14Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0241611 PE=4... [more]
tr|M5VL14|M5VL14_PRUPE7.0e-1755.91Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G271600 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G031980.1CsGy1G031980.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..98
NoneNo IPR availablePANTHERPTHR37194FAMILY NOT NAMEDcoord: 7..97

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy1G031980Csa1G679550Cucumber (Chinese Long) v2cgybcuB002
CsGy1G031980MELO3C010153Melon (DHL92) v3.5.1cgybmeB040
CsGy1G031980CSPI01G33270Wild cucumber (PI 183967)cgybcpiB002
CsGy1G031980MELO3C010153.2Melon (DHL92) v3.6.1cgybmedB034
CsGy1G031980CsaV3_1G045260Cucumber (Chinese Long) v3cgybcucB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G031980Cucurbita maxima (Rimu)cgybcmaB019
CsGy1G031980Cucurbita maxima (Rimu)cgybcmaB027
CsGy1G031980Cucurbita moschata (Rifu)cgybcmoB018
CsGy1G031980Cucurbita moschata (Rifu)cgybcmoB027
CsGy1G031980Cucurbita pepo (Zucchini)cgybcpeB112
CsGy1G031980Cucurbita pepo (Zucchini)cgybcpeB135
CsGy1G031980Bottle gourd (USVL1VR-Ls)cgyblsiB055
CsGy1G031980Silver-seed gourdcarcgybB0899
CsGy1G031980Wax gourdcgybwgoB100