CsaV3_1G039200 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G039200
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Tim44-like domain containing protein
Location	chr1 : 24690437 .. 24691524 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGAAAGTTAATTTGTTGAGAAGTCTTGTGAAACAAGGACCTTTTTGATAGATAGATTCATAGGAAAACAAAGTCTTTTGGGCTAAGGTTGTATCCTTCCAAGGTATGAATTATTCTCTACTATTTGTATTCTCTTCAACAAGTAAAGTATATATGCATATTACTATTCCAAATTTCCCTTTCATTCTTCATTCCTTTCACACAACATTTTCTTTTAATCCATCACCCCTTCCCTCCAAAACATTCCAATGGACAATCGACAATCCAAGTTCCAATTCTTTGATATATTTTACCAAATCTTCCATTTCATTATGAGAATCTTATCATCTAAAGCTCGAGAAATTGTTACTCTTGGAAACTCGGTGCCACATGAACCAAATGCTTCATCTCATGAGCTCACAACTTCCTCGAATTCAGAACATTCTACGTCGTCCCTCACAAACGATCATCTCAAAGAAACGAATAAGTCTCAAGAGCTCGCAACTACCTTGAAATCAGATCATTCAGATTCACCTCTCACGAACGATCATCTTAAAGAACCAAAGGAGATTGATTTGAGAAAAGAAAACGATAAGAAAAGTGATGATTTTGTATCATTGCCTTCTACAACAAAACGAGCTCCAAAGAAAATGGTTAGTATCAATGAAAGAGTTGAGGATATTGATTCTATCATGAAAGAAAGGAGGAAGAAAAAAGGAATAAAGTCGAAATCCTTTGATTTTGATAATGAATATGATGCTTCCTTAAAGCCTATTCGCTCCATTCTCAAGGTTGGCTCAATAAAAGATACCTTAGATTTATCAAAAACTCCTTGAAGATCATATTGGATTGAACTTTGCAATATAATGTTGGATCATATGATTAAATCTCTAATGTTTCTAAACCAAGAAGAAAATATATTACTCATTGTTGCAACAAAAAGTGATTGTTCAATTGAATTCATAGCTTTCTTTTGATTGGTTTACATCGTGAATGTTGATAGTTGATGGAAATGTTGTGAGCCAACAATTTTATGAAATTGTTAACGAGAGTATCGATAAAAATGTTAATGTTGCTGGATACGTTATTCTAAACAAGTTGCAATGTTT

mRNA sequence

ATGGACAATCGACAATCCAAGTTCCAATTCTTTGATATATTTTACCAAATCTTCCATTTCATTATGAGAATCTTATCATCTAAAGCTCGAGAAATTGTTACTCTTGGAAACTCGGTGCCACATGAACCAAATGCTTCATCTCATGAGCTCACAACTTCCTCGAATTCAGAACATTCTACGTCGTCCCTCACAAACGATCATCTCAAAGAAACGAATAAGTCTCAAGAGCTCGCAACTACCTTGAAATCAGATCATTCAGATTCACCTCTCACGAACGATCATCTTAAAGAACCAAAGGAGATTGATTTGAGAAAAGAAAACGATAAGAAAAGTGATGATTTTGTATCATTGCCTTCTACAACAAAACGAGCTCCAAAGAAAATGGTTAGTATCAATGAAAGAGTTGAGGATATTGATTCTATCATGAAAGAAAGGAGGAAGAAAAAAGGAATAAAGTCGAAATCCTTTGATTTTGATAATGAATATGATGCTTCCTTAAAGCCTATTCGCTCCATTCTCAAGGTTGGCTCAATAAAAGATACCTTAGATTTATCAAAAACTCCTTGA

Coding sequence (CDS)

ATGGACAATCGACAATCCAAGTTCCAATTCTTTGATATATTTTACCAAATCTTCCATTTCATTATGAGAATCTTATCATCTAAAGCTCGAGAAATTGTTACTCTTGGAAACTCGGTGCCACATGAACCAAATGCTTCATCTCATGAGCTCACAACTTCCTCGAATTCAGAACATTCTACGTCGTCCCTCACAAACGATCATCTCAAAGAAACGAATAAGTCTCAAGAGCTCGCAACTACCTTGAAATCAGATCATTCAGATTCACCTCTCACGAACGATCATCTTAAAGAACCAAAGGAGATTGATTTGAGAAAAGAAAACGATAAGAAAAGTGATGATTTTGTATCATTGCCTTCTACAACAAAACGAGCTCCAAAGAAAATGGTTAGTATCAATGAAAGAGTTGAGGATATTGATTCTATCATGAAAGAAAGGAGGAAGAAAAAAGGAATAAAGTCGAAATCCTTTGATTTTGATAATGAATATGATGCTTCCTTAAAGCCTATTCGCTCCATTCTCAAGGTTGGCTCAATAAAAGATACCTTAGATTTATCAAAAACTCCTTGA

Protein sequence

MDNRQSKFQFFDIFYQIFHFIMRILSSKAREIVTLGNSVPHEPNASSHELTTSSNSEHSTSSLTNDHLKETNKSQELATTLKSDHSDSPLTNDHLKEPKEIDLRKENDKKSDDFVSLPSTTKRAPKKMVSINERVEDIDSIMKERRKKKGIKSKSFDFDNEYDASLKPIRSILKVGSIKDTLDLSKTP

Homology

[Close]

BLAST of CsaV3_1G039200 vs. NCBI nr
Match: KGN66104.1 (hypothetical protein Csa_1G570780 [Cucumis sativus])

HSP 1 Score: 294.3 bits (752), Expect = 3.0e-76
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 1   MDNRQSKFQFFDIFYQIFHFIMRILSSKAREIVTLGNSVPHEPNASSHELTTSSNSEHST 60
           MDNRQSKFQFFDIFYQIFHFIMRILSSKAREIVTLGNSVPHEPNASSHELTTSSNSEHST
Sbjct: 1   MDNRQSKFQFFDIFYQIFHFIMRILSSKAREIVTLGNSVPHEPNASSHELTTSSNSEHST 60

Query: 61  SSLTNDHLKETNXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDLRKENDKKSDDFVSLPST 120
           SSLTNDHLKETNXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDLRKENDKKSDDFVSLPST
Sbjct: 61  SSLTNDHLKETNXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDLRKENDKKSDDFVSLPST 120

Query: 121 TKRAPKKMVSINERVEDIDSIMKERRKKKGIKSKSFDFDNEYDASLKPIRSILKVGSIKD 180
           TKRAPKKMVSINERVEDIDSIMKERRKKKGIKSKSFDFDNEYDASLKPIRSILKVGSIKD
Sbjct: 121 TKRAPKKMVSINERVEDIDSIMKERRKKKGIKSKSFDFDNEYDASLKPIRSILKVGSIKD 180

Query: 181 TLDLSKTP 189
           TLDLSKTP
Sbjct: 181 TLDLSKTP 188

[Close]

BLAST of CsaV3_1G039200 vs. NCBI nr
Match: XP_022159281.1 (uncharacterized protein LOC111025690 [Momordica charantia])

HSP 1 Score: 134.0 bits (336), Expect = 5.2e-28
Identity = 95/203 (46.80%), Postives = 109/203 (53.69%), Query Frame = 0


Query: 1   MDNRQSKFQFFDIFYQIFHFIMRILSSKAREIVTLGNSVPHEPNA--------------- 60
           MDN + KFQ FDI Y++FHF+M+ILSSKA+E VTLG S   E NA               
Sbjct: 1   MDNGECKFQLFDICYRLFHFLMKILSSKAQETVTLGGSRSSESNASTLEVGLCSHHDENQ 60

Query: 61  --SSHELTTSSNSEHSTSSLTNDHLKETNXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDL 120
             SS E T   NS+H  SSLTNDH +                                  
Sbjct: 61  DNSSQESTAKLNSDHPISSLTNDHQEGRKELHSIEENGSPRIEDKNDSNG---------- 120

Query: 121 RKENDKKSDDFVSLPSTTKRAPKKMVSINERVEDIDSIMKERRKKKGI-KSKSFDFDNEY 180
                K  ++ V LPS TK  PKK+VSI E VEDI+SIM +RRK KG  KSKSFDFDN Y
Sbjct: 121 -NATQKVEEEGVPLPSATKGPPKKIVSIKETVEDINSIMLQRRKSKGTKKSKSFDFDNGY 180

Query: 181 DASLKPIRSILKVGS-IKDTLDL 185
           D SLKP RSILKVGS I D  D+
Sbjct: 181 DGSLKPSRSILKVGSNINDKSDM 192

[Close]

BLAST of CsaV3_1G039200 vs. NCBI nr
Match: XP_022961566.1 (uncharacterized protein LOC111462109 [Cucurbita moschata])

HSP 1 Score: 106.3 bits (264), Expect = 1.2e-19
Identity = 58/80 (72.50%), Postives = 62/80 (77.50%), Query Frame = 0


Query: 106 ENDKKSDDFVSLPSTTKRAPKKMVSINERVEDIDSIMKERRKKKGI-KSKSFDFDNEYDA 165
           +   K+  FV LPST K APKK+VSI E VEDIDSIMKERRK KG  KSKSFDFDNEYD 
Sbjct: 47  DKSDKNHHFVPLPSTIKHAPKKIVSIKETVEDIDSIMKERRKNKGTKKSKSFDFDNEYDG 106

Query: 166 SLKPIRSILKVGSIKDTLDL 185
           SLKP RSILKVGS+ D  DL
Sbjct: 107 SLKPTRSILKVGSLNDKSDL 126

[Close]

BLAST of CsaV3_1G039200 vs. TrEMBL
Match: tr|A0A0A0LYJ0|A0A0A0LYJ0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G570780 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 2.0e-76
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 1   MDNRQSKFQFFDIFYQIFHFIMRILSSKAREIVTLGNSVPHEPNASSHELTTSSNSEHST 60
           MDNRQSKFQFFDIFYQIFHFIMRILSSKAREIVTLGNSVPHEPNASSHELTTSSNSEHST
Sbjct: 1   MDNRQSKFQFFDIFYQIFHFIMRILSSKAREIVTLGNSVPHEPNASSHELTTSSNSEHST 60

Query: 61  SSLTNDHLKETNXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDLRKENDKKSDDFVSLPST 120
           SSLTNDHLKETNXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDLRKENDKKSDDFVSLPST
Sbjct: 61  SSLTNDHLKETNXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDLRKENDKKSDDFVSLPST 120

Query: 121 TKRAPKKMVSINERVEDIDSIMKERRKKKGIKSKSFDFDNEYDASLKPIRSILKVGSIKD 180
           TKRAPKKMVSINERVEDIDSIMKERRKKKGIKSKSFDFDNEYDASLKPIRSILKVGSIKD
Sbjct: 121 TKRAPKKMVSINERVEDIDSIMKERRKKKGIKSKSFDFDNEYDASLKPIRSILKVGSIKD 180

Query: 181 TLDLSKTP 189
           TLDLSKTP
Sbjct: 181 TLDLSKTP 188

[Close]

BLAST of CsaV3_1G039200 vs. TrEMBL
Match: tr|A0A2P5EIY8|A0A2P5EIY8_9ROSA (Tim44-like domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_186550 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 7.7e-04
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 0


Query: 123 RAPKKMVSINERVEDIDSIMKERRKKKGIKSKSFD----FDNEYDASLKPIRSILKVGSI 181
           +APKKMVSIN+RVE+I  IMK+R+     KS+SFD    F N  D S +P++SILKVGS 
Sbjct: 318 KAPKKMVSINDRVEEIHKIMKKRK-----KSRSFDKLNSFVNGEDES-EPLKSILKVGSN 373

The following BLAST results are available for this feature:

BLAST of CsaV3_1G039200 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66104.1	3.0e-76	100.00	hypothetical protein Csa_1G570780 [Cucumis sativus]	[more]
XP_022159281.1	5.2e-28	46.80	uncharacterized protein LOC111025690 [Momordica charantia]	[more]
XP_022961566.1	1.2e-19	72.50	uncharacterized protein LOC111462109 [Cucurbita moschata]	[more]

BLAST of CsaV3_1G039200 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G039200 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G039200 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LYJ0\|A0A0A0LYJ0_CUCSA	2.0e-76	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G570780 PE=4 SV=1	[more]
tr\|A0A2P5EIY8\|A0A2P5EIY8_9ROSA	7.7e-04	56.45	Tim44-like domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G039200.1	CsaV3_1G039200.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..116

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G039200	CSPI01G26860	Wild cucumber (PI 183967)	cpicucB000
CsaV3_1G039200	CmaCh10G010640	Cucurbita maxima (Rimu)	cmacucB0069
CsaV3_1G039200	CmoCh10G011440	Cucurbita moschata (Rifu)	cmocucB0062
CsaV3_1G039200	Cp4.1LG00g02130	Cucurbita pepo (Zucchini)	cpecucB0004
CsaV3_1G039200	Cla011324	Watermelon (97103) v1	cucwmB025
CsaV3_1G039200	MELO3C015344	Melon (DHL92) v3.5.1	cucmeB042
CsaV3_1G039200	ClCG03G016780	Watermelon (Charleston Gray)	cucwcgB050
CsaV3_1G039200	MELO3C015344.2	Melon (DHL92) v3.6.1	cucmedB039
CsaV3_1G039200	Cla97C03G067110	Watermelon (97103) v2	cucwmbB041
CsaV3_1G039200	Bhi02G001663	Wax gourd	cucwgoB111

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G039200	Silver-seed gourd	carcucB0587
CsaV3_1G039200	Cucumber (Gy14) v2	cgybcucB001
CsaV3_1G039200	Cucumber (Gy14) v1	cgycucB259
CsaV3_1G039200	Cucurbita maxima (Rimu)	cmacucB0114
CsaV3_1G039200	Cucurbita moschata (Rifu)	cmocucB0102
CsaV3_1G039200	Cucurbita pepo (Zucchini)	cpecucB0817
CsaV3_1G039200	Bottle gourd (USVL1VR-Ls)	cuclsiB068
CsaV3_1G039200	Wax gourd	cucwgoB090