CsaV3_1G038560 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G038560
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1 : 24297726 .. 24302191 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTAATTGAAGATATTAATGGACTGCTTAAAGTAGCTTCTTGTGAAATTTCTTCCCCATTTGACAACCTCTCATTGTCATCCATTTGGCATACCTCTAGAATGAGAAATGAAGATGTTTCGAGCCCTAACTTGAAATGTTCACAATTGCAGTTTCGAAAACCATTCGATCTCAATGTGTCCGAACACGATGGCTCCAACCAACACCACTGCCCCTTCAGAAGAAAACAAGAAGAAGAGATCAGCCTCAGCCTCAGCCTCGTCCGGTGAAGCTCAAGTTCAAGGAGATGCCAAGAGAAGCTGCCATGGCTCTTCTTCTTTTCCAATTGATCAGTATGTCTTCTTTTTAATCTTCATCTGTAACAATAGTTCTTCTAGTAATATTAAGCTTGTGGTATTTTAGGCATTAATTATTTTATTTTGATTTTTGTATAGTTCTGGATTTGGCTCCTCAGTTGATAATTTGATTGTTGGAGAAGGAGTTAATGGTTTTGTTGAGAAATGGAAAGAATTCGAGCCTGCGTATCGGCAAAAGGTATAGAACTATTTTGATTTAGTTATGTGTTCTGAATGTTTGTGCAAAAATCAAACGATCTCCATTCTCTCCAATAATCCATTTTGCATTTTTCAGGTTTTCAAGGACATGAATACCATGGCGCAGTCTATTCTTTCACCCATCACAATGTCAGTGTTTTAATTACACAATTTATATCATATGTTTTCAATTTATTGTCCTTTACATTGGTGGCCTCTTAATGATCTCATCAACTTTTCCATTCTGTTCCCTAGTAGATATGTTTCGTTTTATAATTCATTTTTCGTCTGTTAAACAGTTAACTGATGATAGCTATTATTAGTGATACCTTTCAATTTAATAAATGATTGTTTTGTATATAATTTTTTAAAATTTTCTCACGTTGAAAACTACCATTAGTGAATAAAATTAATGATAACTTAAAAGTTGATTAGAATTAGTGGGCTTGACTCTTACATTATTTTTTAAAATAATTAATATAGAAGTTTTTTTTTTTCTTTTTTACTCCTTATTACATTGTAGTTTTTTTTTTCGGTTCTCGAGTTTAATTTTCACGTAAGCCTTGGTTTCGTGTTTATTGCTTTTAGTACTAGTCATAAGATGTTGTAGGCCTTTTAACCCTTAATCTCTTAAGTTTTAACTTTAGAGATATATGATTGTCCAAACCTTAGCTTTAACCATGACCATGAGGTCATAGGATGATCCAAGCTAAGTCTTAACCTCACCCTCACCCGTTTCTTTAGTCTTAGAGTTATACAGGCTTTGAGCCTAAACCTATATTCTAATTTTCTGCCTCTTCTATAACACATTGATATATGTTCTCTATATGTGAAATTTATAATTGGCTATGATCATTGATATGAGTTTTATAAATGATAGAACACATCTATTGATGATAGAAGTTTATCACACATACATTTTGTAAAAGCTAAGGAAAGGTTTTATATCTATATATATATGATAAAAGGTTTAATTATATATATGTATTCACTGTTTGATTATTTGATCACCTTCATCGTACAGTTCTCTTTATAAAATGCTGGAGGATATCTGCTTTAATCGGACTTTAGCTCTTTCACAAATTGTGATTCCTTTTCATATAAAATTTGGTACGGTTATTATGTGTGTTTTTGTTACATAATATTTAACAAACTGTTTAATTTAATTTCTGTCCAAATTTAAAAATTATTAATAGAGAAAACAACATGAGAGTGGGAAAAGAAGTAACATGAAAGTTGATATTTGTGATGCCACAAATTTCAACACTCTATCATCTCCACGGGTCCATTGTGGTATGCTTCAGCCAAGTTCTTCATCCTCGATGAAGATTCCGATTCTGGAAATCGTCGAAAATTCATCAAAGATGTTTGTTTGGGAGTCGAAATTACAAATGAAAATTCATTAGTCCAGTTTGGTATGACTATTGGATATAAGTCGTTAATTCCAAACCCTTTAGATTTATGGTTAAACGAGAGAGAGGTATAATCAATATTTCTCATTTCTCTCCTTACAGGAAAGATGGTGCAATACACAACTTATCCTTTTTCCAAGGGATAAGCCAAAATGCAATGGAGATTGTGGGTGATTTCTTCGAGGATTATTATCGTCAAATGGGTCATACCTATATGAAAAAGGTACGTTACAATCTTTTTCTCTTTATCTTAAGCACACAATACTTGTATAAATATATGTAGAGTTGCATCTATTTTTTATTTTTTATTTTTTATTTTTTATACCACTCCAACCACGCACCTAACAAAAACCTTAACACTTTGAAAAATGAAAAGGTAGAAGAAGAAAGAAAAATTTATCATACAAACAATTGTGGTTCAACTCATCATGGTATGGTGGACTGTAAAATGATTGGTGGAACCGTTATAAAATTAAATCACCAAACAAAAAACGTAAAAGAAAAAACACGTAAATGAAGAGAGAATTGATATATAAATTTATATGATTCATTAATATTATTGTGTTAGCTTCGTTCCAACGATTTTATTAGAGAAAATGTATACTCATAGGACTAGAAAATTTACAGGGTGTTCTTCTTTAAACCTAAATCATAATTGTAAATAACTTGAAATAATATTAAATATGATGAATATAATTTCTCATTAGGGTTTTAGTGCTCCGAATCTTCACTGAGGCACGTTACCCTTGGACTCCTGCTGGCTTTGACCGATTAACAAGACTCCTTATTTGATTGATTGTAGTATGCTAGTGATAATTTCAAGGCATTTCCACCTACACTTATAATGCACATTAGAAGGTTATAAATGCACACAACCAAGAGTCGACGAGCACTTTTGTCAGCAAAATCCAGAATAACTCAAACACTTGTTGGTAAAGTTATTATAAGTCCTTTTGGCGTACGTGTTTCAACAGTAGTTAACATTCCCACGATGACTTTTTTAAAATTCATTGAATTATTTTGTAATTCTTTGGAACTTTCTGATTGTGATTCAGAACTAATTCATAAGGTCGTTTAAAGTAAGTTTTAATTAATTTGTTCATTTTGAATAGTTTTTTAGATAAAAGTTAAGGTTTTGAAGTGAGATCCAAATATTGAAATCTTGTTTTAATAATTCAGGAGGCTTCCAAAGAGCATAAGAGCACTACTCGAAGAAAAATAGGTAAGTAAGTTTCTAGCTACCTGGTTGGGCTTGGTTGTTATGTGTCATTCTGTTATTGTAGTTTATTTTTGCTATGTATAGATAAAATGCATGGCTCATGTGAACTGATTCTGAAATAGGAATCAATGATTGTTCTGCGATCTGGTTGGAATACGCCTGGATGCTTCTTAAAATGTTGTGTGCCATTCTGTTTACATGGTTGAACACACCTAAATGTTGGATGTTATGATTATGCTTTCTATCACGTGTGTCAATTGTTTCTGACTTGTTTGAGTGATAAGTATCATGTATGGGATGTGAAACATGATAAGTAAATCATGTATGAGTTGTGGAGTATGACGCGCGTAAATCATGTATGATTTGTGGAGCATGATGCACGTAAATCATGGGTTGCAAAATATGACACGTAAATCATGTATGTGTTAAGGAGTATGACACTTATGTCATGTATGGGTTACAAAACATAACATTAAATCATTATGGGTACAGTGTTATGGAGCATGATATGTAAATCGTGTATAGGTGACCAAGCATGACAAGTAAATCATGCATGAGTGATAGAACGTCATGACCTTAAATCATGTGCATGCACGTGTGATTTGCATGTCACAGTTCATGTGTAGCAAAATTTTAATTGTGATTAATCTTTCTGTAAAACCAAGCATCTTTTATTATTGTGTTCAACATGATCATGTCTAGCATGTATATTATTGTTTGATGGTTTCTTAGGTATGAGCTACTTTTTGTACGTGTTGTGTATTGACACCCCAAGTCTTTTGTAGGTGAAGATGAGAACTACAACACTGGAGGTAGTGGTGAAGAGGAGACATGAGAAAGAATGGCTTATTGTTTTGACTCTAAACTTGGGCGTGATTGCAATAGACTTTAGCTTGTTTTCCTAACCTTGAGAGTTCGTTGATTTTGGTTATGGTTTGCAAAAGTTTGGTTTCCATGCCTGCATCTTATAGTTGAATTGGAGTTTAACTTGATTTTGTGGTTTGATCTTTGCTATATGTCCTCAAACTTTTGCTTTTGATTATATATATTATGATGAGAGATGATGATGGTGTTTAGAAACTGTTCACACCTAGTGAATATGTTTCGATGCACTCCGAACCCAACTCGTATCCTTTTCGAAAAGAAAAAAAAAATTGATTTGAGTGTTTGTTGGAAGTATTTATTAAAAGATTTCAGATCTTATATCCATTGGGGGCAATGTTTTAATAAGTTGGAGGTTATCATGGTTACTCTGTTGTGGTTGATCAATAATTTTGGTAATGTTCTCTAGTTTATCATGGG

mRNA sequence

ATGTGTCCGAACACGATGGCTCCAACCAACACCACTGCCCCTTCAGAAGAAAACAAGAAGAAGAGATCAGCCTCAGCCTCAGCCTCGTCCGGTGAAGCTCAAGTTCAAGGAGATGCCAAGAGAAGCTGCCATGGCTCTTCTTCTTTTCCAATTGATCATTCTGGATTTGGCTCCTCAGTTGATAATTTGATTGTTGGAGAAGGAGTTAATGGTTTTGTTGAGAAATGGAAAGAATTCGAGCCTGCGTATCGGCAAAAGGTTTTCAAGGACATGAATACCATGGCGCAGTCTATTCTTTCACCCATCACAATGAAAGATGGTGCAATACACAACTTATCCTTTTTCCAAGGGATAAGCCAAAATGCAATGGAGATTGTGGGTGATTTCTTCGAGGATTATTATCGTCAAATGGGTCATACCTATATGAAAAAGGAGGCTTCCAAAGAGCATAAGAGCACTACTCGAAGAAAAATAGGTGAAGATGAGAACTACAACACTGGAGGTAGTGGTGAAGAGGAGACATGA

Coding sequence (CDS)

ATGTGTCCGAACACGATGGCTCCAACCAACACCACTGCCCCTTCAGAAGAAAACAAGAAGAAGAGATCAGCCTCAGCCTCAGCCTCGTCCGGTGAAGCTCAAGTTCAAGGAGATGCCAAGAGAAGCTGCCATGGCTCTTCTTCTTTTCCAATTGATCATTCTGGATTTGGCTCCTCAGTTGATAATTTGATTGTTGGAGAAGGAGTTAATGGTTTTGTTGAGAAATGGAAAGAATTCGAGCCTGCGTATCGGCAAAAGGTTTTCAAGGACATGAATACCATGGCGCAGTCTATTCTTTCACCCATCACAATGAAAGATGGTGCAATACACAACTTATCCTTTTTCCAAGGGATAAGCCAAAATGCAATGGAGATTGTGGGTGATTTCTTCGAGGATTATTATCGTCAAATGGGTCATACCTATATGAAAAAGGAGGCTTCCAAAGAGCATAAGAGCACTACTCGAAGAAAAATAGGTGAAGATGAGAACTACAACACTGGAGGTAGTGGTGAAGAGGAGACATGA

Protein sequence

MCPNTMAPTNTTAPSEENKKKRSASASASSGEAQVQGDAKRSCHGSSSFPIDHSGFGSSVDNLIVGEGVNGFVEKWKEFEPAYRQKVFKDMNTMAQSILSPITMKDGAIHNLSFFQGISQNAMEIVGDFFEDYYRQMGHTYMKKEASKEHKSTTRRKIGEDENYNTGGSGEEET

Homology

[Close]

BLAST of CsaV3_1G038560 vs. NCBI nr
Match: XP_004135592.1 (PREDICTED: uncharacterized protein LOC101221597 [Cucumis sativus])

HSP 1 Score: 300.4 bits (768), Expect = 3.9e-78
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 1   MCPNTMAPTNTTAXXXXXXXXXXXXXXXXXXXXXXXGDAKRSCHGSSSFPIDHSGFGSSV 60
           MCPNTMAPTNTTAXXXXXXXXXXXXXXXXXXXXXXXGDAKRSCHGSSSFPIDHSGFGSSV
Sbjct: 1   MCPNTMAPTNTTAXXXXXXXXXXXXXXXXXXXXXXXGDAKRSCHGSSSFPIDHSGFGSSV 60

Query: 61  DNLIVGEGVNGFVEKWKEFEPAYRQKVFKDMNTMAQSILSPITMKDGAIHNLSFFQGISQ 120
           DNLIVGEGVNGFVEKWKEFEPAYRQKVFKDMNTMAQSILSPITMKDGAIHNLSFFQGISQ
Sbjct: 61  DNLIVGEGVNGFVEKWKEFEPAYRQKVFKDMNTMAQSILSPITMKDGAIHNLSFFQGISQ 120

Query: 121 NAMEIVGDFFEDYYRQMGHTYMKKEASKEHKSTTRRKIGEDENYNTGGSGEEET 175
           NAMEIVGDFFEDYYRQMGHTYMKKEASKEHKSTTRRKIGEDENYNTGGSGEEET
Sbjct: 121 NAMEIVGDFFEDYYRQMGHTYMKKEASKEHKSTTRRKIGEDENYNTGGSGEEET 174

[Close]

BLAST of CsaV3_1G038560 vs. NCBI nr
Match: KGN66036.1 (hypothetical protein Csa_1G569140 [Cucumis sativus])

HSP 1 Score: 245.7 bits (626), Expect = 1.1e-61
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MCPNTMAPTNTTAXXXXXXXXXXXXXXXXXXXXXXXGDAKRSCHGSSSFPIDHSGFGSSV 60
           MCPNTMAPTNTTAXXXXXXXXXXXXXXXXXXXXXXXGDAKRSCHGSSSFPIDHSGFGSSV
Sbjct: 1   MCPNTMAPTNTTAXXXXXXXXXXXXXXXXXXXXXXXGDAKRSCHGSSSFPIDHSGFGSSV 60

Query: 61  DNLIVGEGVNGFVEKWKEFEPAYRQKVFKDMNTMAQSILSPITMKDGAIHNLSFFQGISQ 120
           DNLIVGEGVNGFVEKWKEFEPAYRQKVFKDMNTMAQSILSPITMKDGAIHNLSFFQGISQ
Sbjct: 61  DNLIVGEGVNGFVEKWKEFEPAYRQKVFKDMNTMAQSILSPITMKDGAIHNLSFFQGISQ 120

Query: 121 NAMEIVGDFFEDYYRQMGHTYMKKE 146
           NAMEIVGDFFEDYYRQMGHTYMKKE
Sbjct: 121 NAMEIVGDFFEDYYRQMGHTYMKKE 145

[Close]

BLAST of CsaV3_1G038560 vs. NCBI nr
Match: XP_008450596.1 (PREDICTED: uncharacterized protein LOC103492138 isoform X1 [Cucumis melo])

HSP 1 Score: 120.9 bits (302), Expect = 4.2e-24
Identity = 81/158 (51.27%), Postives = 105/158 (66.46%), Query Frame = 0


Query: 37  GDAKRSCHG-SSSFPIDHSGFGSSVDNLIVGEGVNGFVEKWK-EFEPAYRQKVFKDMNTM 96
           G AKRS HG SSSFPID+      +D+  + EG    V+KWK ++E A+R++V KD+++ 
Sbjct: 35  GAAKRSSHGSSSSFPIDYGFDFVIIDDPKIEEG----VKKWKLDYEAAFRRQVAKDIDSR 94

Query: 97  AQSILSPITMKDGA--IH-NLSFFQGISQNAMEIVGDFFEDYYRQMGHTYMKKEAS-KEH 156
           A ++LSP+TM+DGA  +H N SF QGISQ  MEIVGDFFED+  QMG T  +KEAS KEH
Sbjct: 95  ALALLSPLTMEDGATQLHDNSSFIQGISQKGMEIVGDFFEDFC-QMGRTIPEKEASTKEH 154

Query: 157 KSTTRRK----------------IGEDENYNTGGSGEE 173
           KST R+K                +GE E+YN GG+GEE
Sbjct: 155 KSTPRKKGEDENYVDNGGATPSFVGEGEDYNLGGAGEE 187

[Close]

BLAST of CsaV3_1G038560 vs. NCBI nr
Match: XP_008450598.1 (PREDICTED: uncharacterized protein LOC103492138 isoform X2 [Cucumis melo])

HSP 1 Score: 72.0 bits (175), Expect = 2.2e-09
Identity = 50/97 (51.55%), Postives = 61/97 (62.89%), Query Frame = 0


Query: 96  QSILSPITMKDGA--IH-NLSFFQGISQNAMEIVGDFFEDYYRQMGHTYMKKEAS-KEHK 155
           +  +SP+  +DGA  +H N SF QGISQ  MEIVGDFFED+  QMG T  +KEAS KEHK
Sbjct: 56  EKFISPVG-EDGATQLHDNSSFIQGISQKGMEIVGDFFEDFC-QMGRTIPEKEASTKEHK 115

Query: 156 STTRRK----------------IGEDENYNTGGSGEE 173
           ST R+K                +GE E+YN GG+GEE
Sbjct: 116 STPRKKGEDENYVDNGGATPSFVGEGEDYNLGGAGEE 150

[Close]

BLAST of CsaV3_1G038560 vs. TrEMBL
Match: tr|A0A0A0M1H1|A0A0A0M1H1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569140 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 7.5e-62
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MCPNTMAPTNTTAXXXXXXXXXXXXXXXXXXXXXXXGDAKRSCHGSSSFPIDHSGFGSSV 60
           MCPNTMAPTNTTAXXXXXXXXXXXXXXXXXXXXXXXGDAKRSCHGSSSFPIDHSGFGSSV
Sbjct: 1   MCPNTMAPTNTTAXXXXXXXXXXXXXXXXXXXXXXXGDAKRSCHGSSSFPIDHSGFGSSV 60

Query: 61  DNLIVGEGVNGFVEKWKEFEPAYRQKVFKDMNTMAQSILSPITMKDGAIHNLSFFQGISQ 120
           DNLIVGEGVNGFVEKWKEFEPAYRQKVFKDMNTMAQSILSPITMKDGAIHNLSFFQGISQ
Sbjct: 61  DNLIVGEGVNGFVEKWKEFEPAYRQKVFKDMNTMAQSILSPITMKDGAIHNLSFFQGISQ 120

Query: 121 NAMEIVGDFFEDYYRQMGHTYMKKE 146
           NAMEIVGDFFEDYYRQMGHTYMKKE
Sbjct: 121 NAMEIVGDFFEDYYRQMGHTYMKKE 145

[Close]

BLAST of CsaV3_1G038560 vs. TrEMBL
Match: tr|A0A1S3BPK9|A0A1S3BPK9_CUCME (uncharacterized protein LOC103492138 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492138 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.8e-24
Identity = 81/158 (51.27%), Postives = 105/158 (66.46%), Query Frame = 0


Query: 37  GDAKRSCHG-SSSFPIDHSGFGSSVDNLIVGEGVNGFVEKWK-EFEPAYRQKVFKDMNTM 96
           G AKRS HG SSSFPID+      +D+  + EG    V+KWK ++E A+R++V KD+++ 
Sbjct: 35  GAAKRSSHGSSSSFPIDYGFDFVIIDDPKIEEG----VKKWKLDYEAAFRRQVAKDIDSR 94

Query: 97  AQSILSPITMKDGA--IH-NLSFFQGISQNAMEIVGDFFEDYYRQMGHTYMKKEAS-KEH 156
           A ++LSP+TM+DGA  +H N SF QGISQ  MEIVGDFFED+  QMG T  +KEAS KEH
Sbjct: 95  ALALLSPLTMEDGATQLHDNSSFIQGISQKGMEIVGDFFEDFC-QMGRTIPEKEASTKEH 154

Query: 157 KSTTRRK----------------IGEDENYNTGGSGEE 173
           KST R+K                +GE E+YN GG+GEE
Sbjct: 155 KSTPRKKGEDENYVDNGGATPSFVGEGEDYNLGGAGEE 187

[Close]

BLAST of CsaV3_1G038560 vs. TrEMBL
Match: tr|A0A1S3BQ80|A0A1S3BQ80_CUCME (uncharacterized protein LOC103492138 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492138 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.5e-09
Identity = 50/97 (51.55%), Postives = 61/97 (62.89%), Query Frame = 0


Query: 96  QSILSPITMKDGA--IH-NLSFFQGISQNAMEIVGDFFEDYYRQMGHTYMKKEAS-KEHK 155
           +  +SP+  +DGA  +H N SF QGISQ  MEIVGDFFED+  QMG T  +KEAS KEHK
Sbjct: 56  EKFISPVG-EDGATQLHDNSSFIQGISQKGMEIVGDFFEDFC-QMGRTIPEKEASTKEHK 115

Query: 156 STTRRK----------------IGEDENYNTGGSGEE 173
           ST R+K                +GE E+YN GG+GEE
Sbjct: 116 STPRKKGEDENYVDNGGATPSFVGEGEDYNLGGAGEE 150

The following BLAST results are available for this feature:

BLAST of CsaV3_1G038560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135592.1	3.9e-78	100.00	PREDICTED: uncharacterized protein LOC101221597 [Cucumis sativus]	[more]
KGN66036.1	1.1e-61	100.00	hypothetical protein Csa_1G569140 [Cucumis sativus]	[more]
XP_008450596.1	4.2e-24	51.27	PREDICTED: uncharacterized protein LOC103492138 isoform X1 [Cucumis melo]	[more]
XP_008450598.1	2.2e-09	51.55	PREDICTED: uncharacterized protein LOC103492138 isoform X2 [Cucumis melo]	[more]

BLAST of CsaV3_1G038560 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G038560 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G038560 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0M1H1\|A0A0A0M1H1_CUCSA	7.5e-62	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569140 PE=4 SV=1	[more]
tr\|A0A1S3BPK9\|A0A1S3BPK9_CUCME	2.8e-24	51.27	uncharacterized protein LOC103492138 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3BQ80\|A0A1S3BQ80_CUCME	1.5e-09	51.55	uncharacterized protein LOC103492138 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G038560.1	CsaV3_1G038560.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..162

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G038560	CSPI01G26180	Wild cucumber (PI 183967)	cpicucB000
CsaV3_1G038560	Cucsa.051390	Cucumber (Gy14) v1	cgycucB035
CsaV3_1G038560	CsGy1G025460	Cucumber (Gy14) v2	cgybcucB001
CsaV3_1G038560	MELO3C015282	Melon (DHL92) v3.5.1	cucmeB042
CsaV3_1G038560	MELO3C015282.2	Melon (DHL92) v3.6.1	cucmedB039

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G038560	Cucumber (Gy14) v2	cgybcucB062
CsaV3_1G038560	Cucumber (Gy14) v1	cgycucB094
CsaV3_1G038560	Cucumber (Gy14) v2	cgybcucB107
CsaV3_1G038560	Cucumber (Gy14) v1	cgycucB382
CsaV3_1G038560	Cucurbita maxima (Rimu)	cmacucB0069
CsaV3_1G038560	Cucurbita maxima (Rimu)	cmacucB0184
CsaV3_1G038560	Cucurbita maxima (Rimu)	cmacucB0922
CsaV3_1G038560	Cucurbita moschata (Rifu)	cmocucB0058
CsaV3_1G038560	Cucurbita moschata (Rifu)	cmocucB0169
CsaV3_1G038560	Cucurbita moschata (Rifu)	cmocucB0914
CsaV3_1G038560	Cucurbita pepo (Zucchini)	cpecucB0100
CsaV3_1G038560	Cucurbita pepo (Zucchini)	cpecucB0432
CsaV3_1G038560	Cucurbita pepo (Zucchini)	cpecucB0824
CsaV3_1G038560	Cucurbita pepo (Zucchini)	cpecucB0998
CsaV3_1G038560	Wild cucumber (PI 183967)	cpicucB078
CsaV3_1G038560	Wild cucumber (PI 183967)	cpicucB132
CsaV3_1G038560	Bottle gourd (USVL1VR-Ls)	cuclsiB014
CsaV3_1G038560	Bottle gourd (USVL1VR-Ls)	cuclsiB067
CsaV3_1G038560	Bottle gourd (USVL1VR-Ls)	cuclsiB068
CsaV3_1G038560	Melon (DHL92) v3.5.1	cucmeB077
CsaV3_1G038560	Melon (DHL92) v3.6.1	cucmedB071
CsaV3_1G038560	Melon (DHL92) v3.6.1	cucmedB079
CsaV3_1G038560	Watermelon (Charleston Gray)	cucwcgB032
CsaV3_1G038560	Watermelon (Charleston Gray)	cucwcgB042
CsaV3_1G038560	Watermelon (97103) v1	cucwmB017
CsaV3_1G038560	Watermelon (97103) v1	cucwmB046
CsaV3_1G038560	Watermelon (97103) v1	cucwmB077
CsaV3_1G038560	Watermelon (97103) v2	cucwmbB044
CsaV3_1G038560	Wax gourd	cucwgoB016
CsaV3_1G038560	Wax gourd	cucwgoB090
CsaV3_1G038560	Cucumber (Chinese Long) v3	cuccucB013
CsaV3_1G038560	Cucumber (Chinese Long) v3	cuccucB026