CsaV3_1G034620 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G034620
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 21734704 .. 21735624 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGGAAAGTCTAAAGGGTATCAAGCCTCCTCTTTCGTTGCTGATCTTTTTGATGTCAAGGAGGCGCCATTGTCTTCCGCATCAGGTGCTTTTGCAACAATCTTTCCATCTCCACAGAAGGTAATGCTGCTCTTTTTGAACTGCTCCGTTTTACTTAGAACTCTCTCCTTTTCAAATATGTTCAGATTTTGTCGTAGAATTCCAAATGACTTGGAAGAGAAAACATACATCGAGGTGTTAAGTGCTGAGTTTTTAGAAGTTATATTGCATAATGCTAAGAGAATGATTTTGAAACTTATGTAGCATTTTCTGAAGTTCATTGCATAAGGGCCCCCCTACCATTTTTTGCTTATTAGCAATGATGATATATGTTTGTCCTGAATTCCCACTTTGACTACTATTGCAAGTTTTGTTGCAGGAATCTCGTGTATATTTATTCCATTTTAATTCTTATATTCCCAAATCTTCCGTTCTGATCCTTAAACTTTTACAAATCTTCTTCAATTGATATAATTATATTTAGCAGAGATCTTTTGCATCCGTCAAAACGTCTTGTATCAAACTTAACTGATGTGGCACAGGATTTGAGTCTGCATTTGTACTGAAATGTAATATGAAAAGTTATTGTTAAGGACTAAAATGAAATTTTACTTCAAAAATAAAATTGGATGTTCAAGCTACATGGAGGGACCGATGTGAAGACTAGAATAAGACTTATACATGTTATTCGTTTATGAACCTGGATGGGGTTCCGGTGGCAAGTGCCATGAGCCATTGTCAAAGCATCACTTTTTTTAACACTATTATTTTTCTAATTTTCAGGGAGCAGGTAGGAATTCTTCTAGCTCTGTGGATTGGCTAAAACAGACCAATGGAAGTCAACCACATCACACCCGACAAGGGAATTCAGGTGTGTGA

mRNA sequence

ATGGAGGGAAAGTCTAAAGGGTATCAAGCCTCCTCTTTCGTTGCTGATCTTTTTGATGTCAAGGAGGCGCCATTGTCTTCCGCATCAGGTGCTTTTGCAACAATCTTTCCATCTCCACAGAAGGGAGCAGGTAGGAATTCTTCTAGCTCTGTGGATTGGCTAAAACAGACCAATGGAAGTCAACCACATCACACCCGACAAGGGAATTCAGGTGTGTGA

Coding sequence (CDS)

ATGGAGGGAAAGTCTAAAGGGTATCAAGCCTCCTCTTTCGTTGCTGATCTTTTTGATGTCAAGGAGGCGCCATTGTCTTCCGCATCAGGTGCTTTTGCAACAATCTTTCCATCTCCACAGAAGGGAGCAGGTAGGAATTCTTCTAGCTCTGTGGATTGGCTAAAACAGACCAATGGAAGTCAACCACATCACACCCGACAAGGGAATTCAGGTGTGTGA

Protein sequence

MEGKSKGYQASSFVADLFDVKEAPLSSASGAFATIFPSPQKGAGRNSSSSVDWLKQTNGSQPHHTRQGNSGV
Homology
[Close]
BLAST of CsaV3_1G034620 vs. NCBI nr
Match: XP_004153966.1 (PREDICTED: uncharacterized protein LOC101213402 [Cucumis sativus] >KGN65759.1 hypothetical protein Csa_1G525300 [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 9.6e-31
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MEGKSKGYQASSFVADLFDVKEAPLSSASGAFATIFPSPQKGAGRNSSSSVDWLKQTNGS 60
          MEGKSKGYQASSFVADLFDVKEAPLSSASGAFATIFPSPQKGAGRNSSSSVDWLKQTNGS
Sbjct: 1  MEGKSKGYQASSFVADLFDVKEAPLSSASGAFATIFPSPQKGAGRNSSSSVDWLKQTNGS 60

Query: 61 QPHHTRQGNSG 72
          QPHHTRQGNSG
Sbjct: 61 QPHHTRQGNSG 71

[Close]
BLAST of CsaV3_1G034620 vs. NCBI nr
Match: XP_008457434.1 (PREDICTED: uncharacterized protein LOC103497123 [Cucumis melo])

HSP 1 Score: 139.0 bits (349), Expect = 6.2e-30
Identity = 69/71 (97.18%), Postives = 70/71 (98.59%), Query Frame = 0 

Query: 1  MEGKSKGYQASSFVADLFDVKEAPLSSASGAFATIFPSPQKGAGRNSSSSVDWLKQTNGS 60
          MEGKSKGYQ SSFVADLFDVKEAPLSSASGAFATIFPSPQKGAGRNSSSSVDWLKQTNG+
Sbjct: 1  MEGKSKGYQTSSFVADLFDVKEAPLSSASGAFATIFPSPQKGAGRNSSSSVDWLKQTNGN 60

Query: 61 QPHHTRQGNSG 72
          QPHHTRQGNSG
Sbjct: 61 QPHHTRQGNSG 71

[Close]
BLAST of CsaV3_1G034620 vs. NCBI nr
Match: XP_022964980.1 (uncharacterized protein LOC111464929 [Cucurbita moschata] >XP_022964981.1 uncharacterized protein LOC111464929 [Cucurbita moschata] >XP_022964982.1 uncharacterized protein LOC111464929 [Cucurbita moschata])

HSP 1 Score: 115.9 bits (289), Expect = 5.6e-23
Identity = 58/71 (81.69%), Postives = 61/71 (85.92%), Query Frame = 0 

Query: 1  MEGKSKGYQASSFVADLFDVKEAPLSSASGAFATIFPSPQKGAGRNSSSSVDWLKQTNGS 60
          MEGKSKGYQASSFVADLFDVKE P +S+S  FA IFPSPQKG GRNSSSS DWLKQ NG+
Sbjct: 1  MEGKSKGYQASSFVADLFDVKEPPSTSSSEVFAAIFPSPQKGGGRNSSSSGDWLKQANGN 60

Query: 61 QPHHTRQGNSG 72
          QP H RQGNSG
Sbjct: 61 QPSHARQGNSG 71

[Close]
BLAST of CsaV3_1G034620 vs. NCBI nr
Match: XP_022970583.1 (uncharacterized protein LOC111469517 [Cucurbita maxima] >XP_023521040.1 uncharacterized protein LOC111784637 [Cucurbita pepo subsp. pepo] >XP_023521041.1 uncharacterized protein LOC111784637 [Cucurbita pepo subsp. pepo] >XP_023519303.1 uncharacterized protein LOC111782742 [Cucurbita pepo subsp. pepo] >XP_023519304.1 uncharacterized protein LOC111782742 [Cucurbita pepo subsp. pepo] >XP_023519305.1 uncharacterized protein LOC111782742 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 115.9 bits (289), Expect = 5.6e-23
Identity = 58/71 (81.69%), Postives = 61/71 (85.92%), Query Frame = 0 

Query: 1  MEGKSKGYQASSFVADLFDVKEAPLSSASGAFATIFPSPQKGAGRNSSSSVDWLKQTNGS 60
          MEGKSKGYQASSFVADLFDVKE P +S+S  FA IFPSPQKG GRNSSSS DWLKQ NG+
Sbjct: 1  MEGKSKGYQASSFVADLFDVKEPPSTSSSEVFAAIFPSPQKGGGRNSSSSGDWLKQANGN 60

Query: 61 QPHHTRQGNSG 72
          QP H RQGNSG
Sbjct: 61 QPSHARQGNSG 71

[Close]
BLAST of CsaV3_1G034620 vs. NCBI nr
Match: XP_022948634.1 (uncharacterized protein LOC111452257 isoform X1 [Cucurbita moschata] >XP_022948635.1 uncharacterized protein LOC111452257 isoform X1 [Cucurbita moschata] >XP_022948636.1 uncharacterized protein LOC111452257 isoform X1 [Cucurbita moschata])

HSP 1 Score: 106.7 bits (265), Expect = 3.4e-20
Identity = 54/71 (76.06%), Postives = 60/71 (84.51%), Query Frame = 0 

Query: 1  MEGKSKGYQASSFVADLFDVKEAPLSSASGAFATIFPSPQKGAGRNSSSSVDWLKQTNGS 60
          MEGKS GYQ SSFVADLFDV+E+PLSSASG  A +FPSPQK  G  +SSS DWLKQTNG+
Sbjct: 1  MEGKSNGYQTSSFVADLFDVEESPLSSASGVLAAMFPSPQK-VGSRTSSSGDWLKQTNGN 60

Query: 61 QPHHTRQGNSG 72
          QP HT+QGNSG
Sbjct: 61 QPRHTKQGNSG 70

[Close]
BLAST of CsaV3_1G034620 vs. TAIR10
Match: AT5G59080.1 (unknown protein)

HSP 1 Score: 43.9 bits (102), Expect = 4.9e-05
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 0 

Query: 1  MEGK----SKGYQASSFVADLFDVKE-APLSSASGAFATIFPSPQKGAGRNSSSS 51
          MEGK    S    +SSF A+LF  K+ +P SS+SG F+T+FP P KG+ R+ S+S
Sbjct: 1  MEGKGRVGSSSSTSSSFTAELFGSKDPSPPSSSSGIFSTMFPHPSKGSARDGSNS 55

[Close]
BLAST of CsaV3_1G034620 vs. TrEMBL
Match: tr|A0A0A0LXG9|A0A0A0LXG9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G525300 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 6.4e-31
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MEGKSKGYQASSFVADLFDVKEAPLSSASGAFATIFPSPQKGAGRNSSSSVDWLKQTNGS 60
          MEGKSKGYQASSFVADLFDVKEAPLSSASGAFATIFPSPQKGAGRNSSSSVDWLKQTNGS
Sbjct: 1  MEGKSKGYQASSFVADLFDVKEAPLSSASGAFATIFPSPQKGAGRNSSSSVDWLKQTNGS 60

Query: 61 QPHHTRQGNSG 72
          QPHHTRQGNSG
Sbjct: 61 QPHHTRQGNSG 71

[Close]
BLAST of CsaV3_1G034620 vs. TrEMBL
Match: tr|A0A1S3C5M6|A0A1S3C5M6_CUCME (uncharacterized protein LOC103497123 OS=Cucumis melo OX=3656 GN=LOC103497123 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.1e-30
Identity = 69/71 (97.18%), Postives = 70/71 (98.59%), Query Frame = 0 

Query: 1  MEGKSKGYQASSFVADLFDVKEAPLSSASGAFATIFPSPQKGAGRNSSSSVDWLKQTNGS 60
          MEGKSKGYQ SSFVADLFDVKEAPLSSASGAFATIFPSPQKGAGRNSSSSVDWLKQTNG+
Sbjct: 1  MEGKSKGYQTSSFVADLFDVKEAPLSSASGAFATIFPSPQKGAGRNSSSSVDWLKQTNGN 60

Query: 61 QPHHTRQGNSG 72
          QPHHTRQGNSG
Sbjct: 61 QPHHTRQGNSG 71

[Close]
BLAST of CsaV3_1G034620 vs. TrEMBL
Match: tr|M5WP09|M5WP09_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G067400 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.2e-06
Identity = 35/68 (51.47%), Postives = 44/68 (64.71%), Query Frame = 0 

Query: 4   KSKGYQASSFVADLFDVKEAPLSSASGAFATIFPSPQKGAGRNSSSS---VDWLKQTNGS 63
           K +G  ASS  ADLF VKE P  S++G FA+IFP P +  GRNSSSS     W KQ+ G+
Sbjct: 61  KKQGSAASSLTADLFGVKEPPPKSSTGIFASIFPPPSQVVGRNSSSSELTEYWQKQSLGN 120

Query: 64  QPHHTRQG 69
              +T+QG
Sbjct: 121 HAWNTKQG 128

[Close]
BLAST of CsaV3_1G034620 vs. TrEMBL
Match: tr|A0A251NLC3|A0A251NLC3_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G067400 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-05
Identity = 35/70 (50.00%), Postives = 44/70 (62.86%), Query Frame = 0 

Query: 4   KSKGYQASSFVADLFDVKEAPLSSASGAFATIFPSPQKGAGRNSSSS---VDWLKQTNGS 63
           K +G  ASS  ADLF VKE P  S++G FA+IFP P +  GRNSSSS     W KQ+ G+
Sbjct: 61  KKQGSAASSLTADLFGVKEPPPKSSTGIFASIFPPPSQVVGRNSSSSELTEYWQKQSLGN 120

Query: 64  QPHHTRQGNS 71
              +T+Q  S
Sbjct: 121 HAWNTKQAIS 130

[Close]
BLAST of CsaV3_1G034620 vs. TrEMBL
Match: tr|A0A2N9HDK2|A0A2N9HDK2_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40318 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.6e-05
Identity = 32/70 (45.71%), Postives = 43/70 (61.43%), Query Frame = 0 

Query: 1  MEGKSKGYQASSFVADLFDVKEAPLSSASGAFATIFPSPQKGAGRNSSSSV--DWLKQTN 60
          MEGK +    SS  ADLF +KE P S ++G FA+IFP P   AGRNS + V   W K  +
Sbjct: 1  MEGKKQECSPSSLTADLFGIKELPPSPSAGTFASIFPPPPMVAGRNSGTEVIGSWQKPHS 60

Query: 61 GSQPHHTRQG 69
          G++  + +QG
Sbjct: 61 GNETWNMKQG 70

The following BLAST results are available for this feature:
BLAST of CsaV3_1G034620 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004153966.19.6e-31100.00PREDICTED: uncharacterized protein LOC101213402 [Cucumis sativus] >KGN65759.1 hy... [more]
XP_008457434.16.2e-3097.18PREDICTED: uncharacterized protein LOC103497123 [Cucumis melo][more]
XP_022964980.15.6e-2381.69uncharacterized protein LOC111464929 [Cucurbita moschata] >XP_022964981.1 unchar... [more]
XP_022970583.15.6e-2381.69uncharacterized protein LOC111469517 [Cucurbita maxima] >XP_023521040.1 uncharac... [more]
XP_022948634.13.4e-2076.06uncharacterized protein LOC111452257 isoform X1 [Cucurbita moschata] >XP_0229486... [more]
BLAST of CsaV3_1G034620 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G59080.14.9e-0549.09unknown protein[more]
BLAST of CsaV3_1G034620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G034620 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LXG9|A0A0A0LXG9_CUCSA6.4e-31100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G525300 PE=4 SV=1[more]
tr|A0A1S3C5M6|A0A1S3C5M6_CUCME4.1e-3097.18uncharacterized protein LOC103497123 OS=Cucumis melo OX=3656 GN=LOC103497123 PE=... [more]
tr|M5WP09|M5WP09_PRUPE3.2e-0651.47Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G067400 PE=4 SV=1[more]
tr|A0A251NLC3|A0A251NLC3_PRUPE1.2e-0550.00Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G067400 PE=4 SV=1[more]
tr|A0A2N9HDK2|A0A2N9HDK2_FAGSY1.6e-0545.71Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40318 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G034620.1CsaV3_1G034620.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..72
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..72
NoneNo IPR availablePANTHERPTHR33738:SF6EMB|CAB82975.1coord: 1..66
NoneNo IPR availablePANTHERPTHR33738FAMILY NOT NAMEDcoord: 1..66

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G034620CSPI01G23430Wild cucumber (PI 183967)cpicucB008
CsaV3_1G034620Cucsa.146600Cucumber (Gy14) v1cgycucB220
CsaV3_1G034620CmoCh13G000970Cucurbita moschata (Rifu)cmocucB0244
CsaV3_1G034620CsGy1G022910Cucumber (Gy14) v2cgybcucB005
CsaV3_1G034620Carg20631Silver-seed gourdcarcucB0415
CsaV3_1G034620Carg12396Silver-seed gourdcarcucB0472
CsaV3_1G034620Cla008207Watermelon (97103) v1cucwmB031
CsaV3_1G034620MELO3C020597Melon (DHL92) v3.5.1cucmeB031
CsaV3_1G034620ClCG03G001170Watermelon (Charleston Gray)cucwcgB055
CsaV3_1G034620Lsi02G013270Bottle gourd (USVL1VR-Ls)cuclsiB040
CsaV3_1G034620MELO3C020597.2Melon (DHL92) v3.6.1cucmedB028
CsaV3_1G034620Cla97C03G052030Watermelon (97103) v2cucwmbB049
CsaV3_1G034620Bhi08G000476Wax gourdcucwgoB071
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G034620Cucumber (Chinese Long) v3cuccucB024
CsaV3_1G034620Cucumber (Chinese Long) v3cuccucB038
CsaV3_1G034620Silver-seed gourdcarcucB0177
CsaV3_1G034620Silver-seed gourdcarcucB0414
CsaV3_1G034620Silver-seed gourdcarcucB1040
CsaV3_1G034620Cucumber (Gy14) v2cgybcucB001
CsaV3_1G034620Cucumber (Gy14) v2cgybcucB105
CsaV3_1G034620Cucumber (Gy14) v2cgybcucB249
CsaV3_1G034620Cucumber (Gy14) v1cgycucB197
CsaV3_1G034620Cucumber (Gy14) v1cgycucB261
CsaV3_1G034620Cucumber (Gy14) v1cgycucB280
CsaV3_1G034620Cucurbita maxima (Rimu)cmacucB0250
CsaV3_1G034620Cucurbita maxima (Rimu)cmacucB0512
CsaV3_1G034620Cucurbita maxima (Rimu)cmacucB0963
CsaV3_1G034620Cucurbita moschata (Rifu)cmocucB0236
CsaV3_1G034620Cucurbita moschata (Rifu)cmocucB0262
CsaV3_1G034620Cucurbita moschata (Rifu)cmocucB0500
CsaV3_1G034620Cucurbita pepo (Zucchini)cpecucB0001
CsaV3_1G034620Cucurbita pepo (Zucchini)cpecucB0625
CsaV3_1G034620Cucurbita pepo (Zucchini)cpecucB0664
CsaV3_1G034620Cucurbita pepo (Zucchini)cpecucB0666
CsaV3_1G034620Cucurbita pepo (Zucchini)cpecucB1043
CsaV3_1G034620Wild cucumber (PI 183967)cpicucB000
CsaV3_1G034620Wild cucumber (PI 183967)cpicucB130
CsaV3_1G034620Wild cucumber (PI 183967)cpicucB257
CsaV3_1G034620Wild cucumber (PI 183967)cpicucB312
CsaV3_1G034620Bottle gourd (USVL1VR-Ls)cuclsiB031
CsaV3_1G034620Bottle gourd (USVL1VR-Ls)cuclsiB051
CsaV3_1G034620Bottle gourd (USVL1VR-Ls)cuclsiB058
CsaV3_1G034620Melon (DHL92) v3.5.1cucmeB025
CsaV3_1G034620Melon (DHL92) v3.5.1cucmeB063
CsaV3_1G034620Melon (DHL92) v3.5.1cucmeB067
CsaV3_1G034620Melon (DHL92) v3.6.1cucmedB023
CsaV3_1G034620Melon (DHL92) v3.6.1cucmedB063
CsaV3_1G034620Watermelon (Charleston Gray)cucwcgB005
CsaV3_1G034620Watermelon (Charleston Gray)cucwcgB051
CsaV3_1G034620Watermelon (Charleston Gray)cucwcgB096
CsaV3_1G034620Watermelon (97103) v1cucwmB006
CsaV3_1G034620Watermelon (97103) v1cucwmB026
CsaV3_1G034620Watermelon (97103) v1cucwmB040
CsaV3_1G034620Watermelon (97103) v1cucwmB084
CsaV3_1G034620Watermelon (97103) v2cucwmbB014
CsaV3_1G034620Watermelon (97103) v2cucwmbB042
CsaV3_1G034620Watermelon (97103) v2cucwmbB083
CsaV3_1G034620Wax gourdcucwgoB050