Carg12396 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12396
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_074 : 741214 .. 744431 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGATTTCCCGGAAGAAAATGCGCCCATCTTCAGGTAAAACCACGCTCGATTAATCGTTTAATGGCTGATATTAATGCACTCCACTTTTTCAATTTTCCTTTTGGTTCTTCTTTGCTTAGTTTTTGTCGTACTATTTCGCATCGATTGCAAGAGAGTGGTCGTCGAGTGGCTTCACGTCTCTCTCAATTGTGATTGATAACTCTTTTCATTTTAATATTCGACGTCGCAGTCTTTTCGCAATGTAATGATGAAAGAAACAACCAAGGAAACCTCCCATCCCACTTTCCCTGGCTCTCAGTTCATTTCCCTTATCCAAATCGAACTGTTTTTTTTATCATTTCTTCAATAATGAGCTGGTTTGTTCTTATGATAGGGGTTTGAGCGAATCTTCCTTGTTTTTCTTCATGTTCTGCTCTTGAGACCACTTTTTTTTCTTTAACTTGGTTCTGTAATGGAATATGTCAGAGCTGTTGAAATCATTTGTCTCTCTGAGTTGGATAGATCAGAGAGTTGATGGCATCGGAATCAACAAGGATATTGAAAATTTGGGAGTTGAAGAGTCGATTTCTTCTATTTTTGACATTGAAAATGGCATATTCTTTACCTTGTCTTATCATCTGTTATATACATGAATCAAAATTAAATTTTATCGTTTGCAAGATCGTCAATATTGTACCGAGGGTGTTTTTAGAGTATACCAAATCAGTATAGCTATCCTTCTTTAAATGCAGCAACGCAATTTCACAATCAATATTGAAATGAAGCACTAAATAATTTGTTTCTTTCTTTTCTTGGTGTTTGTCAATGTAGAATCATGTACCATTCATTCAATAGAAAATTATGAAAATTCCTGGATGTAGTATTACGGGTTCTCTCGATTATTGGCTTCGGGCTAAACAACGAAAGTTGAATATTATAAGAGGAAGGAGATTCTCATCATCCCCAAATTTAATTAAATTTTGATTTGAAATCCAGAAAAGCACTCTCAGGGGTTGCCATTGGTTGTGTGGGGAAGAAGAGATCCTGAGTAAGATAATACAGTGCTTGTGAAGCTTGCATTACCCATTAAGCCACACAATTCCCAAAATAAGATCCTTGTTAGACTAACAGGAAGGAGAGGCTTCTCTTTCTTTCTTTTGTCTATTCTATTCTTCTTTTTCCACCCAGTGATGATGGCACATGGATGACATAGCAGTAGCCTTTGCCTTCTTATAAATTATGTGTTGAGGAGTCAATTTAGACATGTCTCCTTCTTAGCAGTTAGCTCAATTAGTGGGTCTTTATAAGCATAGTTCTCTTGCTTTCATTCTCACTATGCTGTTTTCTTTCAATAGGGTGTGGTGGAATCTCAGGGTAATTTTGTTTGGTTAGAAGGAAAGATTGAGAGAAAAATGGAGGGAAAGTCTAATGGATATCAGACCTCCTCTTTTGTTGCCGATCTTTTCGATGTCGAGGAGTCGCCATTGTCATCAGCATCAGGAGTTCTTGCAGCAATGTTTCCTTCTCCACAGAAGGTAATGCTGCTCTTTTTGAACTGCTCCTTGCTACATAGAACTTTGTTTCTCCTTTTCAAATAGGGTTAGATTTTGTCACAGAATTCCTAATGATAATGAAGATAAATACATGTAAACGAGACTTTACATGGTGAGGATTTGGAAGTTTTGTTGCATAATGTTAGACGGATGCTTATTGAAAATCATATATTTCTAAAATGATTATTTGTTTAAAATTCAAGAACAAAATAGAACGTTCAAACTACAGGGAGGAACCAACATGAAGACTAGGATAAGATTTAAACATATTATTCCTTACATTTCTTCCTCTTCCTTCTTTATTTTACTTAGACACTTTTTGGGAAAAAAAAAAAAAAGTAATTGTATGAATTTGGATGGTTCATGTGAGATCCCATGTCGATTGGGGTGGAGAACGAAATATTCTTTATAAGGGTGTAGAAACTCCTCCCTAACAGATGCATTTTAGAAATCTTGAGGGGAAACCCATAGAGAACAATAACTGCTAGTGGTGGGCTTGGGCCGTTATAAATGGTATCAGCGCCAGACACCGGGCGATGTGCTGGCGAGGAGGTTGAGCCTTGAAGTGGGGTGGACACGAGGTGGTATGCCAACAAGGATGCTGGGTCCTAAAGGGGGTTGGATTGAGGGGTCCCACATTGATTGGAGGAAGGAACGAGTGCCAGCGAAGACGTTGGACCCCAAAAGGGGGTGGATTATGAGATCCCACATCGATTAGGGAGGAGAACGAAACATTCAGAAACCTCTCCCTAGTAGACGCATTTTAATAATCTTGAGGGGGGTGGATTGAGGGGTCCCACATAGATTGGAGGAAGGAACGAGTGCCACCGAGGACGCTGGATCCCGAAAGGGGGTGGATGATGAGATCCCATATCGGTTAGGGAGGAGAACAAAATATTCTTTATAAGGGTGTGAAACCTCTCCCTAGTAGATGCGTTTTAATAATTTTGAGGGGAAGCCGGAAAGGGAAAGTCTAAAGAGGACAATATCTACTAACGGAGTGCTTGGACCGCCCTTGTGCATGTATCATTTTTATAACACTGTTATTTTTCTAATTTTCAGGTGGGAAGCAGGACTTCTAGCTCTGGGGATTGGCTAAAACAGACGAATGGGAATCAACCACGCCACACCAAGCAAGGAAATTCAGGTGTGAATTGAAATATCAATCCTGTTAAAATTGACGGGAAGAAGGGTATGATATGCAAATTCACGAACCCCAGGAACTTCCAGAGTATAATTTGTAACGATTTCTAATAATTAAAAAGATAAGAGCAAAAATGGCTAGAAAGGAAAACCAAAGAAGTGTAATTCGTTCCCACGAAACAAGAAATCAAGTTATGCCTAACAAAAACCAGATCTGATAATTTCAAGGAGGGAGCTTGGAGCCTTGTCATCTGAGTTCATCTCTATACTATGGAGGACAAGATGGATATTCCGAGGCCCCATCAGGTGGACCATCCCCACCCCCACCGTCCACTGTGAGTATTCTTTGTTGATCAATTTGGATCATTCCCAAAGATTTGAGCTAGGCTGAGACTTTTATTTGACTGATCAGAAAGAGAAAGTAAAACTGAGTGTTCTTCTGTTGTTGCCAATTCATTGATGACCCAGTTGAAGAAAAGTGGGGGAGAAGATGATCCAAATGGAAACAACTCTCAACCTGCTTCTAGGGGAAACTGGTGGCAA

mRNA sequence

TGATTTCCCGGAAGAAAATGCGCCCATCTTCAGGGTGTGGTGGAATCTCAGGGTAATTTTGTTTGGTTAGAAGGAAAGATTGAGAGAAAAATGGAGGGAAAGTCTAATGGATATCAGACCTCCTCTTTTGTTGCCGATCTTTTCGATGTCGAGGAGTCGCCATTGTCATCAGCATCAGGAGTTCTTGCAGCAATGTTTCCTTCTCCACAGAAGTTGAAGAAAAGTGGGGGAGAAGATGATCCAAATGGAAACAACTCTCAACCTGCTTCTAGGGGAAACTGGTGGCAA

Coding sequence (CDS)

ATGGAGGGAAAGTCTAATGGATATCAGACCTCCTCTTTTGTTGCCGATCTTTTCGATGTCGAGGAGTCGCCATTGTCATCAGCATCAGGAGTTCTTGCAGCAATGTTTCCTTCTCCACAGAAGTTGAAGAAAAGTGGGGGAGAAGATGATCCAAATGGAAACAACTCTCAACCTGCTTCTAGGGGAAACTGGTGGCAA

Protein sequence

MEGKSNGYQTSSFVADLFDVEESPLSSASGVLAAMFPSPQKLKKSGGEDDPNGNNSQPASRGNWWQ

Homology

[Close]

BLAST of Carg12396 vs. NCBI nr
Match: XP_022964980.1 (uncharacterized protein LOC111464929 [Cucurbita moschata] >XP_022964981.1 uncharacterized protein LOC111464929 [Cucurbita moschata] >XP_022964982.1 uncharacterized protein LOC111464929 [Cucurbita moschata])

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-13
Identity = 55/131 (41.98%), Postives = 59/131 (45.04%), Query Frame = 0


Query: 1   MEGKSNGYQTSSFVADLFDVEESPLSSASGVLAAMFPSPQK------------------- 60
           MEGKS GYQ SSFVADLFDV+E P +S+S V AA+FPSPQK                   
Sbjct: 1   MEGKSKGYQASSFVADLFDVKEPPSTSSSEVFAAIFPSPQKGGGRNSSSSGDWLKQANGN 60

Query: 61  ----------------------------------------------LKKSGGEDDPNGNN 67
                                                         LKKSGGEDDPNGNN
Sbjct: 61  QPSHARQGNSGGSLEPCHLSSSLYYGGQDGYSQAPSAGLSPSPAPTLKKSGGEDDPNGNN 120

[Close]

BLAST of Carg12396 vs. NCBI nr
Match: XP_022970583.1 (uncharacterized protein LOC111469517 [Cucurbita maxima] >XP_023521040.1 uncharacterized protein LOC111784637 [Cucurbita pepo subsp. pepo] >XP_023521041.1 uncharacterized protein LOC111784637 [Cucurbita pepo subsp. pepo] >XP_023519303.1 uncharacterized protein LOC111782742 [Cucurbita pepo subsp. pepo] >XP_023519304.1 uncharacterized protein LOC111782742 [Cucurbita pepo subsp. pepo] >XP_023519305.1 uncharacterized protein LOC111782742 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-13
Identity = 55/131 (41.98%), Postives = 59/131 (45.04%), Query Frame = 0


Query: 1   MEGKSNGYQTSSFVADLFDVEESPLSSASGVLAAMFPSPQK------------------- 60
           MEGKS GYQ SSFVADLFDV+E P +S+S V AA+FPSPQK                   
Sbjct: 1   MEGKSKGYQASSFVADLFDVKEPPSTSSSEVFAAIFPSPQKGGGRNSSSSGDWLKQANGN 60

Query: 61  ----------------------------------------------LKKSGGEDDPNGNN 67
                                                         LKKSGGEDDPNGNN
Sbjct: 61  QPSHARQGNSGGSLEPCHLSSSLYYGGQDGYSQAPSAGPSXXXXXTLKKSGGEDDPNGNN 120

[Close]

BLAST of Carg12396 vs. NCBI nr
Match: XP_023523189.1 (uncharacterized protein LOC111787454 [Cucurbita pepo subsp. pepo] >XP_023523190.1 uncharacterized protein LOC111787454 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 83.6 bits (205), Expect = 2.8e-13
Identity = 48/68 (70.59%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 1  MEGKSNGYQTSSFVADLFDVEESPLSSASGVLAAMFPSPQKL--KKSGGED---DPNGNN 60
          MEGK NGYQTSSFVADLFDVEESPLSSASGVLAAMFPSPQK+  + S  ED     NGN 
Sbjct: 1  MEGKPNGYQTSSFVADLFDVEESPLSSASGVLAAMFPSPQKVGSRTSSSEDWLKQTNGNQ 60

Query: 61 SQPASRGN 64
           +   +GN
Sbjct: 61 PRHTKQGN 68

[Close]

BLAST of Carg12396 vs. NCBI nr
Match: XP_022948634.1 (uncharacterized protein LOC111452257 isoform X1 [Cucurbita moschata] >XP_022948635.1 uncharacterized protein LOC111452257 isoform X1 [Cucurbita moschata] >XP_022948636.1 uncharacterized protein LOC111452257 isoform X1 [Cucurbita moschata])

HSP 1 Score: 83.2 bits (204), Expect = 3.7e-13
Identity = 48/68 (70.59%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 1  MEGKSNGYQTSSFVADLFDVEESPLSSASGVLAAMFPSPQKL---KKSGGE--DDPNGNN 60
          MEGKSNGYQTSSFVADLFDVEESPLSSASGVLAAMFPSPQK+     S G+     NGN 
Sbjct: 1  MEGKSNGYQTSSFVADLFDVEESPLSSASGVLAAMFPSPQKVGSRTSSSGDWLKQTNGNQ 60

Query: 61 SQPASRGN 64
           +   +GN
Sbjct: 61 PRHTKQGN 68

[Close]

BLAST of Carg12396 vs. NCBI nr
Match: XP_022948638.1 (uncharacterized protein LOC111452257 isoform X2 [Cucurbita moschata])

HSP 1 Score: 83.2 bits (204), Expect = 3.7e-13
Identity = 48/68 (70.59%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 1  MEGKSNGYQTSSFVADLFDVEESPLSSASGVLAAMFPSPQKL---KKSGGE--DDPNGNN 60
          MEGKSNGYQTSSFVADLFDVEESPLSSASGVLAAMFPSPQK+     S G+     NGN 
Sbjct: 1  MEGKSNGYQTSSFVADLFDVEESPLSSASGVLAAMFPSPQKVGSRTSSSGDWLKQTNGNQ 60

Query: 61 SQPASRGN 64
           +   +GN
Sbjct: 61 PRHTKQGN 68

[Close]

BLAST of Carg12396 vs. TrEMBL
Match: tr|A0A1S3C5M6|A0A1S3C5M6_CUCME (uncharacterized protein LOC103497123 OS=Cucumis melo OX=3656 GN=LOC103497123 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.7e-09
Identity = 41/69 (59.42%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 1  MEGKSNGYQTSSFVADLFDVEESPLSSASGVLAAMFPSPQK---LKKSGGED---DPNGN 60
          MEGKS GYQTSSFVADLFDV+E+PLSSASG  A +FPSPQK      S   D     NGN
Sbjct: 1  MEGKSKGYQTSSFVADLFDVKEAPLSSASGAFATIFPSPQKGAGRNSSSSVDWLKQTNGN 60

Query: 61 NSQPASRGN 64
                +GN
Sbjct: 61 QPHHTRQGN 69

[Close]

BLAST of Carg12396 vs. TrEMBL
Match: tr|A0A0A0LXG9|A0A0A0LXG9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G525300 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.7e-09
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 0


Query: 1  MEGKSNGYQTSSFVADLFDVEESPLSSASGVLAAMFPSPQK 42
          MEGKS GYQ SSFVADLFDV+E+PLSSASG  A +FPSPQK
Sbjct: 1  MEGKSKGYQASSFVADLFDVKEAPLSSASGAFATIFPSPQK 41

The following BLAST results are available for this feature:

BLAST of Carg12396 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022964980.1	1.3e-13	41.98	uncharacterized protein LOC111464929 [Cucurbita moschata] >XP_022964981.1 unchar...	[more]
XP_022970583.1	1.3e-13	41.98	uncharacterized protein LOC111469517 [Cucurbita maxima] >XP_023521040.1 uncharac...	[more]
XP_023523189.1	2.8e-13	70.59	uncharacterized protein LOC111787454 [Cucurbita pepo subsp. pepo] >XP_023523190....	[more]
XP_022948634.1	3.7e-13	70.59	uncharacterized protein LOC111452257 isoform X1 [Cucurbita moschata] >XP_0229486...	[more]
XP_022948638.1	3.7e-13	70.59	uncharacterized protein LOC111452257 isoform X2 [Cucurbita moschata]	[more]

BLAST of Carg12396 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg12396 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg12396 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C5M6\|A0A1S3C5M6_CUCME	4.7e-09	59.42	uncharacterized protein LOC103497123 OS=Cucumis melo OX=3656 GN=LOC103497123 PE=...	[more]
tr\|A0A0A0LXG9\|A0A0A0LXG9_CUCSA	4.7e-09	80.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G525300 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12396-RA	Carg12396-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..66
None	No IPR available	PANTHER	PTHR33738:SF6	EMB\|CAB82975.1	coord: 1..41
None	No IPR available	PANTHER	PTHR33738	FAMILY NOT NAMED	coord: 1..41
None	No IPR available	PANTHER	PTHR33738:SF6	EMB\|CAB82975.1	coord: 42..66
None	No IPR available	PANTHER	PTHR33738	FAMILY NOT NAMED	coord: 42..66

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg12396	Cla008207	Watermelon (97103) v1	carwmB0440
Carg12396	Csa1G525300	Cucumber (Chinese Long) v2	carcuB0471
Carg12396	MELO3C020597	Melon (DHL92) v3.5.1	carmeB0449
Carg12396	ClCG03G001170	Watermelon (Charleston Gray)	carwcgB0436
Carg12396	CSPI01G23430	Wild cucumber (PI 183967)	carcpiB0476
Carg12396	Cucsa.146600	Cucumber (Gy14) v1	carcgyB0509
Carg12396	CmaCh13G001000	Cucurbita maxima (Rimu)	carcmaB0610
Carg12396	CmoCh13G000970	Cucurbita moschata (Rifu)	carcmoB0594
Carg12396	CmoCh01G006590	Cucurbita moschata (Rifu)	carcmoB0596
Carg12396	Lsi02G013270	Bottle gourd (USVL1VR-Ls)	carlsiB403
Carg12396	CsGy1G022910	Cucumber (Gy14) v2	carcgybB0448
Carg12396	MELO3C020597.2	Melon (DHL92) v3.6.1	carmedB0451
Carg12396	CsaV3_1G035720	Cucumber (Chinese Long) v3	carcucB0473
Carg12396	CsaV3_1G034620	Cucumber (Chinese Long) v3	carcucB0472
Carg12396	Cla97C03G052030	Watermelon (97103) v2	carwmbB0467
Carg12396	Bhi08G000476	Wax gourd	carwgoB0535

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg12396	Carg20631	Silver-seed gourd	carcarB408

The following block(s) are covering this gene:


Gene	Organism	Block
Carg12396	Cucumber (Chinese Long) v2	carcuB0473
Carg12396	Cucumber (Chinese Long) v3	carcucB0475
Carg12396	Bottle gourd (USVL1VR-Ls)	carlsiB405
Carg12396	Melon (DHL92) v3.5.1	carmeB0450
Carg12396	Melon (DHL92) v3.6.1	carmedB0453
Carg12396	Watermelon (Charleston Gray)	carwcgB0431
Carg12396	Watermelon (97103) v1	carwmB0438
Carg12396	Watermelon (97103) v1	carwmB0441
Carg12396	Watermelon (97103) v2	carwmbB0463
Carg12396	Silver-seed gourd	carcarB192
Carg12396	Silver-seed gourd	carcarB449
Carg12396	Cucumber (Gy14) v2	carcgybB0452
Carg12396	Cucumber (Gy14) v2	carcgybB0450
Carg12396	Cucumber (Gy14) v1	carcgyB0510
Carg12396	Cucurbita maxima (Rimu)	carcmaB0613
Carg12396	Cucurbita maxima (Rimu)	carcmaB0612
Carg12396	Cucurbita moschata (Rifu)	carcmoB0595
Carg12396	Cucurbita pepo (Zucchini)	carcpeB0619
Carg12396	Cucurbita pepo (Zucchini)	carcpeB0620
Carg12396	Cucurbita pepo (Zucchini)	carcpeB0622
Carg12396	Cucurbita pepo (Zucchini)	carcpeB0623
Carg12396	Wild cucumber (PI 183967)	carcpiB0478