CsaV3_1G034240 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G034240
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	RING-H2 finger protein ATL63-like
Location	chr1 : 21452006 .. 21452564 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGTTGTCACCGTCGCCTTTGCCGCCGTTGCACTCTCCAATCCTACTTCCTGGCTTCTTTATGGTTTTGATGACGGTCTCCATGCTTCTTCTCATTGTGCTATTTTTATTCATTGCCATCTTATGTACAAAACGATCAGCCAAATCTGACGGGGAAGAGTCGTCGGAGAATCTGGACATTGAAGCACCGATTTTTCATTACAGCGGAGTTGAAGGCGACGAACAAGAATGTGTGATTTGCCTTTGTGAAATTGAGGAAGGAGAGAAGTGTAGAAAGATGAAGACGTGTGGTCATGTGTTTCACAAAGACTGCATTGACCGGTGGTTTAAGGTGAATGGCCATTGTCCAATTTGCCGGACCTCCGTTTGTATGGTAGTTATTGATCGCGGTGGAAATGCCATGGCTTCTTCTTCATCTTTACTGACCCCCTTCATCAACCAAATTTAATCTCGACACTGATCAACTTTGTGATCACAATGAAACAAGCAAAGTAGTAAATACTAAATATATAGAGTCCTTTTATGTTCTCTTTCCTAATGTTTTGTAGCTACATTGA

mRNA sequence

ATGCCGTTGTCACCGTCGCCTTTGCCGCCGTTGCACTCTCCAATCCTACTTCCTGGCTTCTTTATGGTTTTGATGACGGTCTCCATGCTTCTTCTCATTGTGCTATTTTTATTCATTGCCATCTTATGTACAAAACGATCAGCCAAATCTGACGGGGAAGAGTCGTCGGAGAATCTGGACATTGAAGCACCGATTTTTCATTACAGCGGAGTTGAAGGCGACGAACAAGAATGTGTGATTTGCCTTTGTGAAATTGAGGAAGGAGAGAAGTGTAGAAAGATGAAGACGTGTGGTCATGTGTTTCACAAAGACTGCATTGACCGGTGGTTTAAGCTACATTGA

Coding sequence (CDS)

ATGCCGTTGTCACCGTCGCCTTTGCCGCCGTTGCACTCTCCAATCCTACTTCCTGGCTTCTTTATGGTTTTGATGACGGTCTCCATGCTTCTTCTCATTGTGCTATTTTTATTCATTGCCATCTTATGTACAAAACGATCAGCCAAATCTGACGGGGAAGAGTCGTCGGAGAATCTGGACATTGAAGCACCGATTTTTCATTACAGCGGAGTTGAAGGCGACGAACAAGAATGTGTGATTTGCCTTTGTGAAATTGAGGAAGGAGAGAAGTGTAGAAAGATGAAGACGTGTGGTCATGTGTTTCACAAAGACTGCATTGACCGGTGGTTTAAGCTACATTGA

Protein sequence

MPLSPSPLPPLHSPILLPGFFMVLMTVSMLLLIVLFLFIAILCTKRSAKSDGEESSENLDIEAPIFHYSGVEGDEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKLH

Homology

[Close]

BLAST of CsaV3_1G034240 vs. NCBI nr
Match: XP_011648512.1 (PREDICTED: RING-H2 finger protein ATL67-like [Cucumis sativus])

HSP 1 Score: 209.9 bits (533), Expect = 4.5e-51
Identity = 104/113 (92.04%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 1   MPLSPSPLPPLHSPILLPGFFMVLMTVSMLXXXXXXXFIAILCTKRSAKSDGEESSENLD 60
           MPLSPSPLPPLHSPILLPGFFMVLMTVSML XXX   FIAILCTKRSAK DGEESS+NLD
Sbjct: 1   MPLSPSPLPPLHSPILLPGFFMVLMTVSMLLXXXLFLFIAILCTKRSAKYDGEESSDNLD 60

Query: 61  IEAPIFHYSGVEGDEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKLH 114
           IEAPIFHYSGVEG EQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFK++
Sbjct: 61  IEAPIFHYSGVEGGEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVN 113

[Close]

BLAST of CsaV3_1G034240 vs. NCBI nr
Match: XP_011659858.1 (PREDICTED: E3 ubiquitin-protein ligase ATL9-like [Cucumis sativus])

HSP 1 Score: 196.1 bits (497), Expect = 6.7e-47
Identity = 101/113 (89.38%), Postives = 106/113 (93.81%), Query Frame = 0


Query: 1   MPLSPSPLPPLHSPILLPGFFMVLMTVSMLXXXXXXXFIAILCTKRSAKSDGEESSENLD 60
           MPLSPSPLPPLHSPILLPGFFMVL+T+SM XXXXXXX IAILCTKRSAKSD EE SENLD
Sbjct: 1   MPLSPSPLPPLHSPILLPGFFMVLLTISMXXXXXXXXXIAILCTKRSAKSDREELSENLD 60

Query: 61  IEAPIFHYSGVEGDEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKLH 114
           IEAPIFHY+ VEG EQEC ICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFK++
Sbjct: 61  IEAPIFHYNEVEGGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVN 113

[Close]

BLAST of CsaV3_1G034240 vs. NCBI nr
Match: KGN44779.1 (hypothetical protein Csa_7G387140 [Cucumis sativus])

HSP 1 Score: 188.7 bits (478), Expect = 1.1e-44
Identity = 91/112 (81.25%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 1   MPLSPSPLPPLHSPILLPGFFMVLMTVSMLXXXXXXXFIAILCTKRSAKSDGEESSENLD 60
           MPLSPSP+P LHS ILLPGF M L+TV ML       FI ILC KRSAKSDGEE  ENLD
Sbjct: 11  MPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLD 70

Query: 61  IEAPIFHYSGVEGDEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKL 113
           IEAPIFHY+GVEGDEQEC ICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFK+
Sbjct: 71  IEAPIFHYNGVEGDEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKV 122

[Close]

BLAST of CsaV3_1G034240 vs. NCBI nr
Match: XP_011659772.1 (PREDICTED: RING-H2 finger protein ATL39-like [Cucumis sativus])

HSP 1 Score: 188.7 bits (478), Expect = 1.1e-44
Identity = 91/112 (81.25%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 1   MPLSPSPLPPLHSPILLPGFFMVLMTVSMLXXXXXXXFIAILCTKRSAKSDGEESSENLD 60
           MPLSPSP+P LHS ILLPGF M L+TV ML       FI ILC KRSAKSDGEE  ENLD
Sbjct: 1   MPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLD 60

Query: 61  IEAPIFHYSGVEGDEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKL 113
           IEAPIFHY+GVEGDEQEC ICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFK+
Sbjct: 61  IEAPIFHYNGVEGDEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKV 112

[Close]

BLAST of CsaV3_1G034240 vs. NCBI nr
Match: KGN65715.1 (hypothetical protein Csa_1G512470 [Cucumis sativus])

HSP 1 Score: 169.5 bits (428), Expect = 6.7e-39
Identity = 80/92 (86.96%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 22  MVLMTVSMLXXXXXXXFIAILCTKRSAKSDGEESSENLDIEAPIFHYSGVEGDEQECVIC 81
           MVLMTVSML       FIAILCTKRSAK DGEESS+NLDIEAPIFHYSGVEG EQECVIC
Sbjct: 1   MVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLDIEAPIFHYSGVEGGEQECVIC 60

Query: 82  LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKLH 114
           LCEIEEGEKCRKMKTCGHVFHKDCIDRWFK++
Sbjct: 61  LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVN 92

[Close]

BLAST of CsaV3_1G034240 vs. TAIR10
Match: AT3G62690.1 (AtL5)

HSP 1 Score: 57.8 bits (138), Expect = 5.2e-09
Identity = 26/50 (52.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 64  PIFHYS--GVEGDEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFK 112
           PIF YS    E   +EC +CL E EE ++ R +  CGHVFH DCID WF+
Sbjct: 97  PIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFR 146

[Close]

BLAST of CsaV3_1G034240 vs. TAIR10
Match: AT2G35000.1 (RING/U-box superfamily protein)

HSP 1 Score: 57.4 bits (137), Expect = 6.7e-09
Identity = 33/85 (38.82%), Postives = 40/85 (47.06%), Query Frame = 0


Query: 46  RSAKSDGEE--------SSENLDIEA----PIFHYSGVEG-----DEQECVICLCEIEEG 105
           RS  +D E         ++  LD EA    P F YS V+         EC +CLCE E+ 
Sbjct: 86  RSTDADAESQVVRIRRLTARGLDAEAIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDD 145

Query: 106 EKCRKMKTCGHVFHKDCIDRWFKLH 114
           E  R M  C HVFH DC+D W   H
Sbjct: 146 ETLRLMPPCCHVFHADCVDVWLSEH 170

[Close]

BLAST of CsaV3_1G034240 vs. TAIR10
Match: AT4G40070.1 (RING/U-box superfamily protein)

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-08
Identity = 30/77 (38.96%), Postives = 41/77 (53.25%), Query Frame = 0


Query: 46  RSAKSDGEESSENLD---IEA-PIFHYSGVE-----GDEQECVICLCEIEEGEKCRKMKT 105
           R+  +DG      LD   +E+ P+F YS V+       + EC ICL E+E+ E  R +  
Sbjct: 83  RNRANDGSSRRGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPI 142

Query: 106 CGHVFHKDCIDRWFKLH 114
           C H+FH DCID W   H
Sbjct: 143 CNHLFHIDCIDTWLYSH 159

[Close]

BLAST of CsaV3_1G034240 vs. TAIR10
Match: AT2G35420.1 (RING/U-box superfamily protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-08
Identity = 23/52 (44.23%), Postives = 30/52 (57.69%), Query Frame = 0


Query: 64  PIFHYSGV--EGDEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKLH 114
           P+FHYS    +    EC ICL E  + +  R +  C H FH +CID WF+LH
Sbjct: 87  PVFHYSSATKKNHGTECAICLSEFSDEDTVRLITVCRHPFHSNCIDLWFELH 138

[Close]

BLAST of CsaV3_1G034240 vs. TAIR10
Match: AT2G27940.1 (RING/U-box superfamily protein)

HSP 1 Score: 55.8 bits (133), Expect = 2.0e-08
Identity = 21/47 (44.68%), Postives = 31/47 (65.96%), Query Frame = 0


Query: 64  PIFHYS-GVEGDEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRW 110
           P++ Y+   +   ++CVICL + EEGE  + +  CGHVFH DC+D W
Sbjct: 125 PVYRYTKAAKQRNEDCVICLSDFEEGETVKVIPHCGHVFHVDCVDTW 171

[Close]

BLAST of CsaV3_1G034240 vs. Swiss-Prot
Match: sp|Q9LZJ6|ATL5_ARATH (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 9.3e-08
Identity = 26/50 (52.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 64  PIFHYS--GVEGDEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFK 112
           PIF YS    E   +EC +CL E EE ++ R +  CGHVFH DCID WF+
Sbjct: 97  PIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFR 146

[Close]

BLAST of CsaV3_1G034240 vs. Swiss-Prot
Match: sp|O64763|ATL9_ARATH (E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana OX=3702 GN=ATL9 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-07
Identity = 33/85 (38.82%), Postives = 40/85 (47.06%), Query Frame = 0


Query: 46  RSAKSDGEE--------SSENLDIEA----PIFHYSGVEG-----DEQECVICLCEIEEG 105
           RS  +D E         ++  LD EA    P F YS V+         EC +CLCE E+ 
Sbjct: 86  RSTDADAESQVVRIRRLTARGLDAEAIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDD 145

Query: 106 EKCRKMKTCGHVFHKDCIDRWFKLH 114
           E  R M  C HVFH DC+D W   H
Sbjct: 146 ETLRLMPPCCHVFHADCVDVWLSEH 170

[Close]

BLAST of CsaV3_1G034240 vs. Swiss-Prot
Match: sp|Q8W571|ATL32_ARATH (RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3)

HSP 1 Score: 56.6 bits (135), Expect = 2.1e-07
Identity = 30/77 (38.96%), Postives = 41/77 (53.25%), Query Frame = 0


Query: 46  RSAKSDGEESSENLD---IEA-PIFHYSGVE-----GDEQECVICLCEIEEGEKCRKMKT 105
           R+  +DG      LD   +E+ P+F YS V+       + EC ICL E+E+ E  R +  
Sbjct: 83  RNRANDGSSRRGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPI 142

Query: 106 CGHVFHKDCIDRWFKLH 114
           C H+FH DCID W   H
Sbjct: 143 CNHLFHIDCIDTWLYSH 159

[Close]

BLAST of CsaV3_1G034240 vs. Swiss-Prot
Match: sp|Q9P7E1|YOF7_SCHPO (Uncharacterized RING finger protein P4H10.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBP4H10.07 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.1e-07
Identity = 20/55 (36.36%), Postives = 36/55 (65.45%), Query Frame = 0


Query: 55  SSENLDIEAPIFHYSGVEGDEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRW 110
           S ++L+    +F +SG    ++ C++CL   E  ++CR++K C H FH++CID+W
Sbjct: 505 SQKDLEKAGGVFPFSGT---DERCLVCLSNFELNDECRRLKQCNHFFHRECIDQW 556

[Close]

BLAST of CsaV3_1G034240 vs. Swiss-Prot
Match: sp|Q6NKR1|ATL28_ARATH (RING-H2 finger protein ATL28 OS=Arabidopsis thaliana OX=3702 GN=ATL28 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.7e-07
Identity = 23/52 (44.23%), Postives = 30/52 (57.69%), Query Frame = 0


Query: 64  PIFHYSGV--EGDEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKLH 114
           P+FHYS    +    EC ICL E  + +  R +  C H FH +CID WF+LH
Sbjct: 87  PVFHYSSATKKNHGTECAICLSEFSDEDTVRLITVCRHPFHSNCIDLWFELH 138

[Close]

BLAST of CsaV3_1G034240 vs. TrEMBL
Match: tr|A0A0A0K790|A0A0A0K790_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G387140 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 7.1e-45
Identity = 91/112 (81.25%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 1   MPLSPSPLPPLHSPILLPGFFMVLMTVSMLXXXXXXXFIAILCTKRSAKSDGEESSENLD 60
           MPLSPSP+P LHS ILLPGF M L+TV ML       FI ILC KRSAKSDGEE  ENLD
Sbjct: 11  MPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLD 70

Query: 61  IEAPIFHYSGVEGDEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKL 113
           IEAPIFHY+GVEGDEQEC ICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFK+
Sbjct: 71  IEAPIFHYNGVEGDEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKV 122

[Close]

BLAST of CsaV3_1G034240 vs. TrEMBL
Match: tr|A0A0A0LUU6|A0A0A0LUU6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G512470 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 4.4e-39
Identity = 80/92 (86.96%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 22  MVLMTVSMLXXXXXXXFIAILCTKRSAKSDGEESSENLDIEAPIFHYSGVEGDEQECVIC 81
           MVLMTVSML       FIAILCTKRSAK DGEESS+NLDIEAPIFHYSGVEG EQECVIC
Sbjct: 1   MVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLDIEAPIFHYSGVEGGEQECVIC 60

Query: 82  LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKLH 114
           LCEIEEGEKCRKMKTCGHVFHKDCIDRWFK++
Sbjct: 61  LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVN 92

[Close]

BLAST of CsaV3_1G034240 vs. TrEMBL
Match: tr|A0A0A0LY10|A0A0A0LY10_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G514470 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 5.4e-37
Identity = 80/112 (71.43%), Postives = 86/112 (76.79%), Query Frame = 0


Query: 1   MPLSPSPLPPLHSPILLPGFFMVLMTVSMLXXXXXXXFIAILCTKRSAKSDGEESSENLD 60
           M LSPSPLP LHS ILLP +   L+  SM        FI+ILC KRSAKSD EE  EN+D
Sbjct: 1   MSLSPSPLPSLHSLILLPRYIEDLLMASMFLSIVLLLFISILCRKRSAKSDVEEFPENVD 60

Query: 61  IEAPIFHYSGVEGDEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKL 113
           IEAPIFHY G EG EQ+C ICLCEIEEGEKCRKMKTCGHVFHKDCI RWFK+
Sbjct: 61  IEAPIFHYGGDEGGEQDCAICLCEIEEGEKCRKMKTCGHVFHKDCIGRWFKV 112

[Close]

BLAST of CsaV3_1G034240 vs. TrEMBL
Match: tr|A0A1S3C741|A0A1S3C741_CUCME (RING-H2 finger protein ATL63-like OS=Cucumis melo OX=3656 GN=LOC103497233 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.1e-32
Identity = 81/111 (72.97%), Postives = 91/111 (81.98%), Query Frame = 0


Query: 1   MPLSPSPLPPLHSPILLPGFFMVLMTVSMLXXXXXXXFIAILCTKRSAKSDGEESSENLD 60
           +PL PSPLPPLHSPI+LP     L+ +S  XXXXXXX    LC KRSAKSD +E S+NL+
Sbjct: 11  LPLPPSPLPPLHSPIVLPRSIEDLLMLSXXXXXXXXXXXXXLCGKRSAKSDEKELSKNLN 70

Query: 61  IEAPIFHYSGVEG-DEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWF 111
           I+APIFHY G++G DEQEC ICLCEIEEGEKCRKMKTCGH FHKDCIDRWF
Sbjct: 71  IQAPIFHY-GIDGDDEQECAICLCEIEEGEKCRKMKTCGHAFHKDCIDRWF 120

[Close]

BLAST of CsaV3_1G034240 vs. TrEMBL
Match: tr|A0A1S3C6H2|A0A1S3C6H2_CUCME (RING-H2 finger protein ATL64-like OS=Cucumis melo OX=3656 GN=LOC103497232 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.8e-31
Identity = 81/112 (72.32%), Postives = 90/112 (80.36%), Query Frame = 0


Query: 1   MPLSPSPLPPLHSPILLPGFFMVLMTVSMLXXXXXXXFIAILCTKRSAKSDGEES-SENL 60
           +PL PSP+PPLHSPI+LP     L+     XXXXXXX     C KRSAKSD EES S+N+
Sbjct: 11  LPLPPSPVPPLHSPIVLPRSIEDLLMXXXXXXXXXXXXXXXXCGKRSAKSDEEESLSKNI 70

Query: 61  DIEAPIFHYSGVEGD-EQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWF 111
           DI+APIFHYS V+GD EQEC ICLCEIEEGEKCRK+KTCGHVFHKDCIDRWF
Sbjct: 71  DIQAPIFHYS-VDGDIEQECAICLCEIEEGEKCRKIKTCGHVFHKDCIDRWF 121

The following BLAST results are available for this feature:

BLAST of CsaV3_1G034240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011648512.1	4.5e-51	92.04	PREDICTED: RING-H2 finger protein ATL67-like [Cucumis sativus]	[more]
XP_011659858.1	6.7e-47	89.38	PREDICTED: E3 ubiquitin-protein ligase ATL9-like [Cucumis sativus]	[more]
KGN44779.1	1.1e-44	81.25	hypothetical protein Csa_7G387140 [Cucumis sativus]	[more]
XP_011659772.1	1.1e-44	81.25	PREDICTED: RING-H2 finger protein ATL39-like [Cucumis sativus]	[more]
KGN65715.1	6.7e-39	86.96	hypothetical protein Csa_1G512470 [Cucumis sativus]	[more]

BLAST of CsaV3_1G034240 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G62690.1	5.2e-09	52.00	AtL5	[more]
AT2G35000.1	6.7e-09	38.82	RING/U-box superfamily protein	[more]
AT4G40070.1	1.2e-08	38.96	RING/U-box superfamily protein	[more]
AT2G35420.1	1.5e-08	44.23	RING/U-box superfamily protein	[more]
AT2G27940.1	2.0e-08	44.68	RING/U-box superfamily protein	[more]

BLAST of CsaV3_1G034240 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LZJ6\|ATL5_ARATH	9.3e-08	52.00	RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1	[more]
sp\|O64763\|ATL9_ARATH	1.2e-07	38.82	E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana OX=3702 GN=ATL9 PE=1 SV...	[more]
sp\|Q8W571\|ATL32_ARATH	2.1e-07	38.96	RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3	[more]
sp\|Q9P7E1\|YOF7_SCHPO	2.1e-07	36.36	Uncharacterized RING finger protein P4H10.07 OS=Schizosaccharomyces pombe (strai...	[more]
sp\|Q6NKR1\|ATL28_ARATH	2.7e-07	44.23	RING-H2 finger protein ATL28 OS=Arabidopsis thaliana OX=3702 GN=ATL28 PE=2 SV=1	[more]

BLAST of CsaV3_1G034240 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K790\|A0A0A0K790_CUCSA	7.1e-45	81.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G387140 PE=4 SV=1	[more]
tr\|A0A0A0LUU6\|A0A0A0LUU6_CUCSA	4.4e-39	86.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G512470 PE=4 SV=1	[more]
tr\|A0A0A0LY10\|A0A0A0LY10_CUCSA	5.4e-37	71.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G514470 PE=4 SV=1	[more]
tr\|A0A1S3C741\|A0A1S3C741_CUCME	1.1e-32	72.97	RING-H2 finger protein ATL63-like OS=Cucumis melo OX=3656 GN=LOC103497233 PE=4 S...	[more]
tr\|A0A1S3C6H2\|A0A1S3C6H2_CUCME	5.8e-31	72.32	RING-H2 finger protein ATL64-like OS=Cucumis melo OX=3656 GN=LOC103497232 PE=4 S...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G034240.1	CsaV3_1G034240.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 76..111 e-value: 3.7E-10 score: 39.8
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 78..113 score: 8.786
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 48..113 e-value: 2.6E-14 score: 54.1
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 51..111
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 71..112

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G034240	CsGy1G022600	Cucumber (Gy14) v2	cgybcucB001
CsaV3_1G034240	Carg01043	Silver-seed gourd	carcucB0177

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G034240	Cucumber (Gy14) v2	cgybcucB105
CsaV3_1G034240	Cucumber (Gy14) v2	cgybcucB163
CsaV3_1G034240	Cucumber (Gy14) v2	cgybcucB253
CsaV3_1G034240	Cucumber (Gy14) v1	cgycucB055
CsaV3_1G034240	Cucumber (Gy14) v1	cgycucB157
CsaV3_1G034240	Cucumber (Gy14) v1	cgycucB280
CsaV3_1G034240	Cucurbita maxima (Rimu)	cmacucB0250
CsaV3_1G034240	Cucurbita maxima (Rimu)	cmacucB0512
CsaV3_1G034240	Cucurbita maxima (Rimu)	cmacucB0648
CsaV3_1G034240	Cucurbita maxima (Rimu)	cmacucB0692
CsaV3_1G034240	Cucurbita moschata (Rifu)	cmocucB0236
CsaV3_1G034240	Cucurbita moschata (Rifu)	cmocucB0262
CsaV3_1G034240	Cucurbita moschata (Rifu)	cmocucB0500
CsaV3_1G034240	Cucurbita moschata (Rifu)	cmocucB0633
CsaV3_1G034240	Cucurbita moschata (Rifu)	cmocucB0677
CsaV3_1G034240	Cucurbita pepo (Zucchini)	cpecucB0331
CsaV3_1G034240	Cucurbita pepo (Zucchini)	cpecucB0625
CsaV3_1G034240	Cucurbita pepo (Zucchini)	cpecucB0664
CsaV3_1G034240	Cucurbita pepo (Zucchini)	cpecucB0875
CsaV3_1G034240	Wild cucumber (PI 183967)	cpicucB000
CsaV3_1G034240	Wild cucumber (PI 183967)	cpicucB130
CsaV3_1G034240	Wild cucumber (PI 183967)	cpicucB201
CsaV3_1G034240	Wild cucumber (PI 183967)	cpicucB314
CsaV3_1G034240	Bottle gourd (USVL1VR-Ls)	cuclsiB018
CsaV3_1G034240	Bottle gourd (USVL1VR-Ls)	cuclsiB001
CsaV3_1G034240	Bottle gourd (USVL1VR-Ls)	cuclsiB031
CsaV3_1G034240	Melon (DHL92) v3.5.1	cucmeB007
CsaV3_1G034240	Melon (DHL92) v3.5.1	cucmeB025
CsaV3_1G034240	Melon (DHL92) v3.5.1	cucmeB067
CsaV3_1G034240	Melon (DHL92) v3.5.1	cucmeB090
CsaV3_1G034240	Melon (DHL92) v3.6.1	cucmedB007
CsaV3_1G034240	Melon (DHL92) v3.6.1	cucmedB023
CsaV3_1G034240	Melon (DHL92) v3.6.1	cucmedB063
CsaV3_1G034240	Watermelon (Charleston Gray)	cucwcgB005
CsaV3_1G034240	Watermelon (Charleston Gray)	cucwcgB034
CsaV3_1G034240	Watermelon (Charleston Gray)	cucwcgB051
CsaV3_1G034240	Watermelon (Charleston Gray)	cucwcgB065
CsaV3_1G034240	Watermelon (97103) v1	cucwmB006
CsaV3_1G034240	Watermelon (97103) v1	cucwmB026
CsaV3_1G034240	Watermelon (97103) v1	cucwmB072
CsaV3_1G034240	Watermelon (97103) v1	cucwmB079
CsaV3_1G034240	Watermelon (97103) v2	cucwmbB014
CsaV3_1G034240	Watermelon (97103) v2	cucwmbB026
CsaV3_1G034240	Watermelon (97103) v2	cucwmbB042
CsaV3_1G034240	Wax gourd	cucwgoB021
CsaV3_1G034240	Wax gourd	cucwgoB050
CsaV3_1G034240	Cucumber (Chinese Long) v3	cuccucB024
CsaV3_1G034240	Cucumber (Chinese Long) v3	cuccucB029
CsaV3_1G034240	Cucumber (Chinese Long) v3	cuccucB049
CsaV3_1G034240	Silver-seed gourd	carcucB0336
CsaV3_1G034240	Silver-seed gourd	carcucB0364
CsaV3_1G034240	Silver-seed gourd	carcucB0414
CsaV3_1G034240	Silver-seed gourd	carcucB0472
CsaV3_1G034240	Silver-seed gourd	carcucB1040