CsGy1G022600 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G022600
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	RING-H2 finger protein ATL63-like
Location	Chr1 : 21578926 .. 21579405 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATCTCCAATTTTTTTACCACCCCTGATGCCGTTGTCACCGTCGCCTTTGCCGCCGTTGCACTCTCCAATCCTACTTCCTGGCTTCTTTATGGTTTTGATGACGGTCTCCATGCTTCTTCTCATTGTGCTATTTTTATTCATTGCCATCTTATGTACAAAACGATCAGCCAAATCTGACGGGGAAGAGTCGTCGGAGAATCTGGACATTGAAGCACCGATTTTTCATTACAGCGGAGTTGAAGGCGACGAACAAGAATGTGTGATTTGCCTTTGTGAAATTGAGGAAGGAGAGAAGTGTAGAAAGATGAAGACGTGTGGTCATGTGTTTCACAAAGACTGCATTGACCGGTGGTTTAAGGTGAATGGCCATTGTCCAATTTGCCGGACCTCCGTTTGTATGGTAGTTATTGATCGCGGTGGAAATGCCATGGCTTCTTCTTCATCTTTACTGACCCCCTTCATCAACCAAATTTAA

mRNA sequence

ATGTCATCTCCAATTTTTTTACCACCCCTGATGCCGTTGTCACCGTCGCCTTTGCCGCCGTTGCACTCTCCAATCCTACTTCCTGGCTTCTTTATGGTTTTGATGACGGTCTCCATGCTTCTTCTCATTGTGCTATTTTTATTCATTGCCATCTTATGTACAAAACGATCAGCCAAATCTGACGGGGAAGAGTCGTCGGAGAATCTGGACATTGAAGCACCGATTTTTCATTACAGCGGAGTTGAAGGCGACGAACAAGAATGTGTGATTTGCCTTTGTGAAATTGAGGAAGGAGAGAAGTGTAGAAAGATGAAGACGTGTGGTCATGTGTTTCACAAAGACTGCATTGACCGGTGGTTTAAGGTGAATGGCCATTGTCCAATTTGCCGGACCTCCGTTTGTATGGTAGTTATTGATCGCGGTGGAAATGCCATGGCTTCTTCTTCATCTTTACTGACCCCCTTCATCAACCAAATTTAA

Coding sequence (CDS)

ATGTCATCTCCAATTTTTTTACCACCCCTGATGCCGTTGTCACCGTCGCCTTTGCCGCCGTTGCACTCTCCAATCCTACTTCCTGGCTTCTTTATGGTTTTGATGACGGTCTCCATGCTTCTTCTCATTGTGCTATTTTTATTCATTGCCATCTTATGTACAAAACGATCAGCCAAATCTGACGGGGAAGAGTCGTCGGAGAATCTGGACATTGAAGCACCGATTTTTCATTACAGCGGAGTTGAAGGCGACGAACAAGAATGTGTGATTTGCCTTTGTGAAATTGAGGAAGGAGAGAAGTGTAGAAAGATGAAGACGTGTGGTCATGTGTTTCACAAAGACTGCATTGACCGGTGGTTTAAGGTGAATGGCCATTGTCCAATTTGCCGGACCTCCGTTTGTATGGTAGTTATTGATCGCGGTGGAAATGCCATGGCTTCTTCTTCATCTTTACTGACCCCCTTCATCAACCAAATTTAA

Protein sequence

MSSPIFLPPLMPLSPSPLPPLHSPILLPGFFMVLMTVSMLLLIVLFLFIAILCTKRSAKSDGEESSENLDIEAPIFHYSGVEGDEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDRGGNAMASSSSLLTPFINQI

Homology

[Close]

BLAST of CsGy1G022600 vs. NCBI nr
Match: XP_011648512.1 (PREDICTED: RING-H2 finger protein ATL67-like [Cucumis sativus])

HSP 1 Score: 275.0 bits (702), Expect = 1.6e-70
Identity = 137/149 (91.95%), Postives = 139/149 (93.29%), Query Frame = 0


Query: 11  MPLSPSPLPPLHSPILLPGFFMVLMTVSXXXXXXXXXXIAILCTKRSAKSDGEESSENLD 70
           MPLSPSPLPPLHSPILLPGFFMVLMTVS   XXX    IAILCTKRSAK DGEESS+NLD
Sbjct: 1   MPLSPSPLPPLHSPILLPGFFMVLMTVSMLLXXXLFLFIAILCTKRSAKYDGEESSDNLD 60

Query: 71  IEAPIFHYSGVEGDEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICR 130
           IEAPIFHYSGVEG EQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICR
Sbjct: 61  IEAPIFHYSGVEGGEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICR 120

Query: 131 TSVCMVVIDRGGNAMASSSSLLTPFINQI 160
           TSVCMVVIDRGGNAMASSSSL TPFIN+I
Sbjct: 121 TSVCMVVIDRGGNAMASSSSLPTPFINRI 149

[Close]

BLAST of CsGy1G022600 vs. NCBI nr
Match: XP_011659858.1 (PREDICTED: E3 ubiquitin-protein ligase ATL9-like [Cucumis sativus])

HSP 1 Score: 264.2 bits (674), Expect = 2.8e-67
Identity = 137/149 (91.95%), Postives = 142/149 (95.30%), Query Frame = 0


Query: 11  MPLSPSPLPPLHSPILLPGFFMVLMTVSXXXXXXXXXXIAILCTKRSAKSDGEESSENLD 70
           MPLSPSPLPPLHSPILLPGFFMVL+T+S XXXXXXXXXIAILCTKRSAKSD EE SENLD
Sbjct: 1   MPLSPSPLPPLHSPILLPGFFMVLLTISMXXXXXXXXXIAILCTKRSAKSDREELSENLD 60

Query: 71  IEAPIFHYSGVEGDEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICR 130
           IEAPIFHY+ VEG EQEC ICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICR
Sbjct: 61  IEAPIFHYNEVEGGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICR 120

Query: 131 TSVCMVVIDRGGNAMASSSSLLTPFINQI 160
           TSVC+VVIDRGGNAMASSSSL TPFIN+I
Sbjct: 121 TSVCVVVIDRGGNAMASSSSLPTPFINRI 149

[Close]

BLAST of CsGy1G022600 vs. NCBI nr
Match: KGN44779.1 (hypothetical protein Csa_7G387140 [Cucumis sativus])

HSP 1 Score: 258.8 bits (660), Expect = 1.2e-65
Identity = 128/159 (80.50%), Postives = 134/159 (84.28%), Query Frame = 0


Query: 1   MSSPIFLPPLMPLSPSPLPPLHSPILLPGFFMVLMTVSXXXXXXXXXXIAILCTKRSAKS 60
           MSSP  LP LMPLSPSP+P LHS ILLPGF M L+TV           I ILC KRSAKS
Sbjct: 1   MSSPNILPSLMPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKS 60

Query: 61  DGEESSENLDIEAPIFHYSGVEGDEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWF 120
           DGEE  ENLDIEAPIFHY+GVEGDEQEC ICLCEIEEGEKCRKMKTCGHVFHKDCIDRWF
Sbjct: 61  DGEELPENLDIEAPIFHYNGVEGDEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWF 120

Query: 121 KVNGHCPICRTSVCMVVIDRGGNAMASSSSLLTPFINQI 160
           KV+GHCPICRTSVC+VV+D GGNAMASSSSL TPFINQI
Sbjct: 121 KVDGHCPICRTSVCVVVVDHGGNAMASSSSLPTPFINQI 159

[Close]

BLAST of CsGy1G022600 vs. NCBI nr
Match: XP_011659772.1 (PREDICTED: RING-H2 finger protein ATL39-like [Cucumis sativus])

HSP 1 Score: 250.0 bits (637), Expect = 5.5e-63
Identity = 121/149 (81.21%), Postives = 127/149 (85.23%), Query Frame = 0


Query: 11  MPLSPSPLPPLHSPILLPGFFMVLMTVSXXXXXXXXXXIAILCTKRSAKSDGEESSENLD 70
           MPLSPSP+P LHS ILLPGF M L+TV           I ILC KRSAKSDGEE  ENLD
Sbjct: 1   MPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLD 60

Query: 71  IEAPIFHYSGVEGDEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICR 130
           IEAPIFHY+GVEGDEQEC ICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKV+GHCPICR
Sbjct: 61  IEAPIFHYNGVEGDEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVDGHCPICR 120

Query: 131 TSVCMVVIDRGGNAMASSSSLLTPFINQI 160
           TSVC+VV+D GGNAMASSSSL TPFINQI
Sbjct: 121 TSVCVVVVDHGGNAMASSSSLPTPFINQI 149

[Close]

BLAST of CsGy1G022600 vs. NCBI nr
Match: KGN65715.1 (hypothetical protein Csa_1G512470 [Cucumis sativus])

HSP 1 Score: 235.0 bits (598), Expect = 1.8e-58
Identity = 113/128 (88.28%), Postives = 115/128 (89.84%), Query Frame = 0


Query: 32  MVLMTVSXXXXXXXXXXIAILCTKRSAKSDGEESSENLDIEAPIFHYSGVEGDEQECVIC 91
           MVLMTVS          IAILCTKRSAK DGEESS+NLDIEAPIFHYSGVEG EQECVIC
Sbjct: 1   MVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLDIEAPIFHYSGVEGGEQECVIC 60

Query: 92  LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDRGGNAMASSSSL 151
           LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDRGGNAMASSSSL
Sbjct: 61  LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDRGGNAMASSSSL 120

Query: 152 LTPFINQI 160
            TPFIN+I
Sbjct: 121 PTPFINRI 128

[Close]

BLAST of CsGy1G022600 vs. TAIR10
Match: AT3G62690.1 (AtL5)

HSP 1 Score: 69.7 bits (169), Expect = 1.8e-12
Identity = 31/62 (50.00%), Postives = 38/62 (61.29%), Query Frame = 0


Query: 74  PIFHYS--GVEGDEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRT 133
           PIF YS    E   +EC +CL E EE ++ R +  CGHVFH DCID WF+    CP+CR 
Sbjct: 97  PIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRA 156

[Close]

BLAST of CsGy1G022600 vs. TAIR10
Match: AT2G17450.1 (RING-H2 finger A3A)

HSP 1 Score: 68.9 bits (167), Expect = 3.1e-12
Identity = 29/63 (46.03%), Postives = 37/63 (58.73%), Query Frame = 0


Query: 82  EGDEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDRG 141
           EGD  EC ICL +  +GE+ R +  CGH FH +CID+W      CP CR  +  V  DR 
Sbjct: 96  EGDSTECAICLTDFADGEEIRVLPLCGHSFHVECIDKWLVSRSSCPSCRRILTPVRCDRC 155

Query: 142 GNA 145
           G+A
Sbjct: 156 GHA 158

[Close]

BLAST of CsGy1G022600 vs. TAIR10
Match: AT1G04360.1 (RING/U-box superfamily protein)

HSP 1 Score: 68.2 bits (165), Expect = 5.3e-12
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 84  DEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSV 134
           + QEC +CL E +E EK R +  C HVFH DCID W + N +CP+CRTSV
Sbjct: 130 NSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSV 179

[Close]

BLAST of CsGy1G022600 vs. TAIR10
Match: AT3G14320.1 (Zinc finger, C3HC4 type (RING finger) family protein)

HSP 1 Score: 68.2 bits (165), Expect = 5.3e-12
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 87  ECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCM 136
           ECV+CL E+ +G+K R + +C H FH +CID W + N  CPICR  VC+
Sbjct: 87  ECVVCLSELADGDKARVLPSCDHWFHVECIDSWLQSNSTCPICRKRVCL 135

[Close]

BLAST of CsGy1G022600 vs. TAIR10
Match: AT3G61550.1 (RING/U-box superfamily protein)

HSP 1 Score: 67.8 bits (164), Expect = 7.0e-12
Identity = 28/51 (54.90%), Postives = 31/51 (60.78%), Query Frame = 0


Query: 82  EGDEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTS 133
           EG E  C ICLCE  E E  R M  C H FH  C+D W K+NG CP+CR S
Sbjct: 130 EGRETTCSICLCEYMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNS 180

[Close]

BLAST of CsGy1G022600 vs. Swiss-Prot
Match: sp|Q9LZJ6|ATL5_ARATH (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.3e-11
Identity = 31/62 (50.00%), Postives = 38/62 (61.29%), Query Frame = 0


Query: 74  PIFHYS--GVEGDEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRT 133
           PIF YS    E   +EC +CL E EE ++ R +  CGHVFH DCID WF+    CP+CR 
Sbjct: 97  PIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRA 156

[Close]

BLAST of CsGy1G022600 vs. Swiss-Prot
Match: sp|O22755|ATL44_ARATH (Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=ATL44 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.6e-11
Identity = 29/63 (46.03%), Postives = 37/63 (58.73%), Query Frame = 0


Query: 82  EGDEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDRG 141
           EGD  EC ICL +  +GE+ R +  CGH FH +CID+W      CP CR  +  V  DR 
Sbjct: 96  EGDSTECAICLTDFADGEEIRVLPLCGHSFHVECIDKWLVSRSSCPSCRRILTPVRCDRC 155

Query: 142 GNA 145
           G+A
Sbjct: 156 GHA 158

[Close]

BLAST of CsGy1G022600 vs. Swiss-Prot
Match: sp|P93823|ATL1_ARATH (RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 9.6e-11
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 84  DEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSV 134
           + QEC +CL E +E EK R +  C HVFH DCID W + N +CP+CRTSV
Sbjct: 130 NSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSV 179

[Close]

BLAST of CsGy1G022600 vs. Swiss-Prot
Match: sp|Q9LUL6|ATL61_ARATH (Putative RING-H2 finger protein ATL61 OS=Arabidopsis thaliana OX=3702 GN=ATL61 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 9.6e-11
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 87  ECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCM 136
           ECV+CL E+ +G+K R + +C H FH +CID W + N  CPICR  VC+
Sbjct: 87  ECVVCLSELADGDKARVLPSCDHWFHVECIDSWLQSNSTCPICRKRVCL 135

[Close]

BLAST of CsGy1G022600 vs. Swiss-Prot
Match: sp|Q9M313|ATL68_ARATH (RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-10
Identity = 28/51 (54.90%), Postives = 31/51 (60.78%), Query Frame = 0


Query: 82  EGDEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTS 133
           EG E  C ICLCE  E E  R M  C H FH  C+D W K+NG CP+CR S
Sbjct: 130 EGRETTCSICLCEYMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNS 180

[Close]

BLAST of CsGy1G022600 vs. TrEMBL
Match: tr|A0A0A0K790|A0A0A0K790_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G387140 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 7.8e-66
Identity = 128/159 (80.50%), Postives = 134/159 (84.28%), Query Frame = 0


Query: 1   MSSPIFLPPLMPLSPSPLPPLHSPILLPGFFMVLMTVSXXXXXXXXXXIAILCTKRSAKS 60
           MSSP  LP LMPLSPSP+P LHS ILLPGF M L+TV           I ILC KRSAKS
Sbjct: 1   MSSPNILPSLMPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKS 60

Query: 61  DGEESSENLDIEAPIFHYSGVEGDEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWF 120
           DGEE  ENLDIEAPIFHY+GVEGDEQEC ICLCEIEEGEKCRKMKTCGHVFHKDCIDRWF
Sbjct: 61  DGEELPENLDIEAPIFHYNGVEGDEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWF 120

Query: 121 KVNGHCPICRTSVCMVVIDRGGNAMASSSSLLTPFINQI 160
           KV+GHCPICRTSVC+VV+D GGNAMASSSSL TPFINQI
Sbjct: 121 KVDGHCPICRTSVCVVVVDHGGNAMASSSSLPTPFINQI 159

[Close]

BLAST of CsGy1G022600 vs. TrEMBL
Match: tr|A0A0A0LUU6|A0A0A0LUU6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G512470 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.2e-58
Identity = 113/128 (88.28%), Postives = 115/128 (89.84%), Query Frame = 0


Query: 32  MVLMTVSXXXXXXXXXXIAILCTKRSAKSDGEESSENLDIEAPIFHYSGVEGDEQECVIC 91
           MVLMTVS          IAILCTKRSAK DGEESS+NLDIEAPIFHYSGVEG EQECVIC
Sbjct: 1   MVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLDIEAPIFHYSGVEGGEQECVIC 60

Query: 92  LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDRGGNAMASSSSL 151
           LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDRGGNAMASSSSL
Sbjct: 61  LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDRGGNAMASSSSL 120

Query: 152 LTPFINQI 160
            TPFIN+I
Sbjct: 121 PTPFINRI 128

[Close]

BLAST of CsGy1G022600 vs. TrEMBL
Match: tr|A0A0A0LY10|A0A0A0LY10_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G514470 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 2.6e-53
Identity = 105/147 (71.43%), Postives = 117/147 (79.59%), Query Frame = 0


Query: 11  MPLSPSPLPPLHSPILLPGFFMVLMTVSXXXXXXXXXXIAILCTKRSAKSDGEESSENLD 70
           M LSPSPLP LHS ILLP +   L+  S          I+ILC KRSAKSD EE  EN+D
Sbjct: 1   MSLSPSPLPSLHSLILLPRYIEDLLMASMFLSIVLLLFISILCRKRSAKSDVEEFPENVD 60

Query: 71  IEAPIFHYSGVEGDEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICR 130
           IEAPIFHY G EG EQ+C ICLCEIEEGEKCRKMKTCGHVFHKDCI RWFKV+GHCPICR
Sbjct: 61  IEAPIFHYGGDEGGEQDCAICLCEIEEGEKCRKMKTCGHVFHKDCIGRWFKVDGHCPICR 120

Query: 131 TSVCMVVIDRGGNAMASSSSLLTPFIN 158
           TSVC+VV+DRGGNA+ SS+SLL P++N
Sbjct: 121 TSVCVVVVDRGGNAITSSTSLLIPYMN 147

[Close]

BLAST of CsGy1G022600 vs. TrEMBL
Match: tr|A0A1S3C741|A0A1S3C741_CUCME (RING-H2 finger protein ATL63-like OS=Cucumis melo OX=3656 GN=LOC103497233 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.4e-46
Identity = 113/154 (73.38%), Postives = 125/154 (81.17%), Query Frame = 0


Query: 1   MSSPIFLPPLMPLSPSPLPPLHSPILLPGFFMVLMTVSXXXXXXXXXXIAILCTKRSAKS 60
           MSSPI LP L+PL PSPLPPLHSPI+LP     L+ +SXXXXXXXXXX   LC KRSAKS
Sbjct: 1   MSSPILLPFLLPLPPSPLPPLHSPIVLPRSIEDLLMLSXXXXXXXXXXXXXLCGKRSAKS 60

Query: 61  DGEESSENLDIEAPIFHYSGVEG-DEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRW 120
           D +E S+NL+I+APIFHY G++G DEQEC ICLCEIEEGEKCRKMKTCGH FHKDCIDRW
Sbjct: 61  DEKELSKNLNIQAPIFHY-GIDGDDEQECAICLCEIEEGEKCRKMKTCGHAFHKDCIDRW 120

Query: 121 FKVNGHCPICRTSVCMVVIDRGGNAMASSSSLLT 154
           F V  HCP+CRTS C VV+DR  N MASSSS  T
Sbjct: 121 FTVELHCPLCRTSGC-VVVDRSENVMASSSSFPT 152

[Close]

BLAST of CsGy1G022600 vs. TrEMBL
Match: tr|A0A1S3C6H2|A0A1S3C6H2_CUCME (RING-H2 finger protein ATL64-like OS=Cucumis melo OX=3656 GN=LOC103497232 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 3.4e-45
Identity = 114/155 (73.55%), Postives = 125/155 (80.65%), Query Frame = 0


Query: 1   MSSPIFLPPLMPLSPSPLPPLHSPILLPGFFMVLMTVSXXXXXXXXXXIAILCTKRSAKS 60
           MSSPI LP L+PL PSP+PPLHSPI+LP     L+   XXXXXXXXXX    C KRSAKS
Sbjct: 1   MSSPILLPFLLPLPPSPVPPLHSPIVLPRSIEDLLMXXXXXXXXXXXXXXXXCGKRSAKS 60

Query: 61  DGEES-SENLDIEAPIFHYSGVEGD-EQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDR 120
           D EES S+N+DI+APIFHYS V+GD EQEC ICLCEIEEGEKCRK+KTCGHVFHKDCIDR
Sbjct: 61  DEEESLSKNIDIQAPIFHYS-VDGDIEQECAICLCEIEEGEKCRKIKTCGHVFHKDCIDR 120

Query: 121 WFKVNGHCPICRTSVCMVVIDRGGNAMASSSSLLT 154
           WF V  HCP+CRTSVC VV+D   NAMASSSS  T
Sbjct: 121 WFTVELHCPLCRTSVC-VVVDCSENAMASSSSFPT 153

The following BLAST results are available for this feature:

BLAST of CsGy1G022600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011648512.1	1.6e-70	91.95	PREDICTED: RING-H2 finger protein ATL67-like [Cucumis sativus]	[more]
XP_011659858.1	2.8e-67	91.95	PREDICTED: E3 ubiquitin-protein ligase ATL9-like [Cucumis sativus]	[more]
KGN44779.1	1.2e-65	80.50	hypothetical protein Csa_7G387140 [Cucumis sativus]	[more]
XP_011659772.1	5.5e-63	81.21	PREDICTED: RING-H2 finger protein ATL39-like [Cucumis sativus]	[more]
KGN65715.1	1.8e-58	88.28	hypothetical protein Csa_1G512470 [Cucumis sativus]	[more]

BLAST of CsGy1G022600 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G62690.1	1.8e-12	50.00	AtL5	[more]
AT2G17450.1	3.1e-12	46.03	RING-H2 finger A3A	[more]
AT1G04360.1	5.3e-12	56.00	RING/U-box superfamily protein	[more]
AT3G14320.1	5.3e-12	51.02	Zinc finger, C3HC4 type (RING finger) family protein	[more]
AT3G61550.1	7.0e-12	54.90	RING/U-box superfamily protein	[more]

BLAST of CsGy1G022600 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LZJ6\|ATL5_ARATH	3.3e-11	50.00	RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1	[more]
sp\|O22755\|ATL44_ARATH	5.6e-11	46.03	Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=AT...	[more]
sp\|P93823\|ATL1_ARATH	9.6e-11	56.00	RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1	[more]
sp\|Q9LUL6\|ATL61_ARATH	9.6e-11	51.02	Putative RING-H2 finger protein ATL61 OS=Arabidopsis thaliana OX=3702 GN=ATL61 P...	[more]
sp\|Q9M313\|ATL68_ARATH	1.3e-10	54.90	RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1	[more]

BLAST of CsGy1G022600 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K790\|A0A0A0K790_CUCSA	7.8e-66	80.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G387140 PE=4 SV=1	[more]
tr\|A0A0A0LUU6\|A0A0A0LUU6_CUCSA	1.2e-58	88.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G512470 PE=4 SV=1	[more]
tr\|A0A0A0LY10\|A0A0A0LY10_CUCSA	2.6e-53	71.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G514470 PE=4 SV=1	[more]
tr\|A0A1S3C741\|A0A1S3C741_CUCME	1.4e-46	73.38	RING-H2 finger protein ATL63-like OS=Cucumis melo OX=3656 GN=LOC103497233 PE=4 S...	[more]
tr\|A0A1S3C6H2\|A0A1S3C6H2_CUCME	3.4e-45	73.55	RING-H2 finger protein ATL64-like OS=Cucumis melo OX=3656 GN=LOC103497232 PE=4 S...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G022600.1	CsGy1G022600.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 88..129 e-value: 3.9E-5 score: 33.1
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 86..130 e-value: 5.0E-14 score: 52.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 88..130 score: 12.607
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 65..137 e-value: 1.8E-19 score: 70.7
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 80..131
None	No IPR available	PANTHER	PTHR14155:SF430	GH10160P	coord: 80..131
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 81..136

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G022600	CsaV3_1G034240	Cucumber (Chinese Long) v3	cgybcucB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G022600	Cucumber (Gy14) v2	cgybcgybB018
CsGy1G022600	Cucumber (Gy14) v2	cgybcgybB039
CsGy1G022600	Cucurbita maxima (Rimu)	cgybcmaB075
CsGy1G022600	Cucurbita maxima (Rimu)	cgybcmaB083
CsGy1G022600	Cucurbita maxima (Rimu)	cgybcmaB104
CsGy1G022600	Cucurbita maxima (Rimu)	cgybcmaB118
CsGy1G022600	Cucurbita maxima (Rimu)	cgybcmaB122
CsGy1G022600	Cucurbita moschata (Rifu)	cgybcmoB069
CsGy1G022600	Cucurbita moschata (Rifu)	cgybcmoB077
CsGy1G022600	Cucurbita moschata (Rifu)	cgybcmoB098
CsGy1G022600	Cucurbita moschata (Rifu)	cgybcmoB109
CsGy1G022600	Cucurbita moschata (Rifu)	cgybcmoB112
CsGy1G022600	Cucurbita pepo (Zucchini)	cgybcpeB035
CsGy1G022600	Cucurbita pepo (Zucchini)	cgybcpeB071
CsGy1G022600	Cucurbita pepo (Zucchini)	cgybcpeB099
CsGy1G022600	Cucurbita pepo (Zucchini)	cgybcpeB107
CsGy1G022600	Cucurbita pepo (Zucchini)	cgybcpeB136
CsGy1G022600	Cucumber (Chinese Long) v2	cgybcuB002
CsGy1G022600	Cucumber (Chinese Long) v2	cgybcuB023
CsGy1G022600	Cucumber (Chinese Long) v2	cgybcuB044
CsGy1G022600	Bottle gourd (USVL1VR-Ls)	cgyblsiB002
CsGy1G022600	Bottle gourd (USVL1VR-Ls)	cgyblsiB027
CsGy1G022600	Melon (DHL92) v3.5.1	cgybmeB023
CsGy1G022600	Melon (DHL92) v3.5.1	cgybmeB059
CsGy1G022600	Melon (DHL92) v3.6.1	cgybmedB007
CsGy1G022600	Melon (DHL92) v3.6.1	cgybmedB021
CsGy1G022600	Melon (DHL92) v3.6.1	cgybmedB053
CsGy1G022600	Watermelon (Charleston Gray)	cgybwcgB004
CsGy1G022600	Watermelon (Charleston Gray)	cgybwcgB031
CsGy1G022600	Watermelon (Charleston Gray)	cgybwcgB044
CsGy1G022600	Watermelon (97103) v1	cgybwmB005
CsGy1G022600	Watermelon (97103) v1	cgybwmB023
CsGy1G022600	Watermelon (97103) v1	cgybwmB071
CsGy1G022600	Wild cucumber (PI 183967)	cgybcpiB002
CsGy1G022600	Wild cucumber (PI 183967)	cgybcpiB022
CsGy1G022600	Wild cucumber (PI 183967)	cgybcpiB041
CsGy1G022600	Silver-seed gourd	carcgybB0166
CsGy1G022600	Silver-seed gourd	carcgybB0316
CsGy1G022600	Silver-seed gourd	carcgybB0341
CsGy1G022600	Silver-seed gourd	carcgybB0390
CsGy1G022600	Silver-seed gourd	carcgybB0448
CsGy1G022600	Silver-seed gourd	carcgybB0983
CsGy1G022600	Cucumber (Chinese Long) v3	cgybcucB027
CsGy1G022600	Cucumber (Chinese Long) v3	cgybcucB048
CsGy1G022600	Watermelon (97103) v2	cgybwmbB015
CsGy1G022600	Watermelon (97103) v2	cgybwmbB028
CsGy1G022600	Watermelon (97103) v2	cgybwmbB042
CsGy1G022600	Wax gourd	cgybwgoB016
CsGy1G022600	Wax gourd	cgybwgoB045